mRNA_H-paniculata_contig1721.4018.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1721.4018.1
Unique NamemRNA_H-paniculata_contig1721.4018.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1721.4018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1721contigH-paniculata_contig1721:4246..6220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size750
Cds size435
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1721.4018.1prot_H-paniculata_contig1721.4018.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1721 4246..4680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929357.6672623-CDS-H-paniculata_contig1721:4245..46801622929357.6672623-CDS-H-paniculata_contig1721:4245..4680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1721 4246..4680 -
1691480828.9031355-CDS-H-paniculata_contig1721:4245..46801691480828.9031355-CDS-H-paniculata_contig1721:4245..4680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1721 4246..4680 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929357.68507-UTR-H-paniculata_contig1721:4680..47611622929357.68507-UTR-H-paniculata_contig1721:4680..4761Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1721 4681..4761 -
1691480828.9124074-UTR-H-paniculata_contig1721:4680..47611691480828.9124074-UTR-H-paniculata_contig1721:4680..4761Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1721 4681..4761 -
1622929357.7011871-UTR-H-paniculata_contig1721:5126..53291622929357.7011871-UTR-H-paniculata_contig1721:5126..5329Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1721 5127..5329 -
1691480828.9253695-UTR-H-paniculata_contig1721:5126..53291691480828.9253695-UTR-H-paniculata_contig1721:5126..5329Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1721 5127..5329 -
1622929357.7165816-UTR-H-paniculata_contig1721:6190..62201622929357.7165816-UTR-H-paniculata_contig1721:6190..6220Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1721 6191..6220 -
1691480828.9348094-UTR-H-paniculata_contig1721:6190..62201691480828.9348094-UTR-H-paniculata_contig1721:6190..6220Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1721 6191..6220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1721.4018.1

>prot_H-paniculata_contig1721.4018.1 ID=prot_H-paniculata_contig1721.4018.1|Name=mRNA_H-paniculata_contig1721.4018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
MAQGVRHLSLGQGLCSSWTYIFGGSDRWVRGGDSHKCFSYAAATMEDLRR
RWTTLQPRTGLACQVVLRAPSDGMLAEYAGSISRLLTLTLNWLEWDPPIY
SLLQHTTAATAESCLACDKSMSSCPVVAGGGASEVSLHLLFKDLA
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mRNA from alignment at H-paniculata_contig1721:4246..6220-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1721.4018.1 ID=mRNA_H-paniculata_contig1721.4018.1|Name=mRNA_H-paniculata_contig1721.4018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1975bp|location=Sequence derived from alignment at H-paniculata_contig1721:4246..6220- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATTATGCCAGCCACGAATGTCAGAACACGTAAGCTCCTGCTTCCGGAG
ATCGCTGCTGCGCAGCAATGCGAAACTGTTGGCTTGTGATTTTCATGGGA
AGTCTTGCTGAGCGGCATTGCTTAGTTCCGGACTTCACAAAATGGATGCC
TTTCGGAATTGAATGCGCCCGAACCTTTCGGAGAAAATGGTTTTGCGTAT
GTCAATGCACCATATATTTTGTGGTTCTCATGATTTTGGCAAGACCTGTT
TTGAGGTATTAACCTTCAGCGAAGTCGATCCATATCACAGAGTAACCAAT
GTTTGAGGAAGGGTGATGTAAAACCGGATTGGCGTCATGTGAAACCTAGA
CGTTTGCCCAAGCAAAAATCGACACGGTGATGTACCTGGGATTGTTGGAG
AGAGCAATCCTGTATTTTTATTGAGAATATACACTTGTACTTGCCAAGTT
AGAAGCTGGAATTCCACACTGCCGAAAAAATACCATGTATCAGCTTCACC
CTCACGTATGTTTATGCGCACATGGAGTTAATTGATCAAAGGGGCTTCGC
AATTCCGGTATAATACGGTTGTCTAGGAGGTCGTTGGTTTATTGTGTCTC
ACGTTGTTGTTCGACACTCAACCATGAGACTCGCCTGTTGTTTTGCGCCA
GCACCCTAGTTTTGGGATGGCTCCTTCAACAGTTAGGAATATCTTGGGGT
TTCGTGTAGGGTATTACCAACAAATTCGTTCCATTTATCTATCAGTTTAA
CTACTTTCTGGCGTTGTACCGCACAAACCATAAGGTCGAGGTCCCCCCCC
CCGACTCGAGTATACAGAATGTATCAGTTCCGCCGTTAATAACCAATCGC
CATCTCTTCGCATTCGCTTCGTCCCTCTCAATGCGCCACAGGGTCATGGT
TAGCGTAACGGACACAACACAACACGCAAAACTACTGAGATACCATGGTC
GGGTGGCGGGAGCCATAGTAGATGCTCTTAATGCTGCTGGAGTCGGACTA
GTGATTTGCACGCATGCTCTAAAGGTCGGTCGCAAAGTTTGATCGAGGAG
GTGGCAGTGATGTAGACGCTTATGAGGTACATCAAGAGAACTCTGCACGT
ACTGCGACATCGATAGTATATACGTATACACTATTCTTGTCACAACGATT
TCTGGATTCTTTCACCTGCGGCGAGCGCAGCATCACCTGCTCGACACAAT
GGGCACCAACGCCATCTCTCGCCACCATGTTCAAGATTTCCGAGACATAA
AGGTATTGGTTGGACTGCAATATTTTGCTCGAACTACGTATTACTTCTCA
TACTTGCCACCATCCCGACAGCGACCAGCCTCTTCCATTCATACCCTCCG
TCTCTACACGCACCAAAACAATTAGGACCCCTTTTCAGATCTCCTGCGGG
AGGCGGGCATGGCCGGCCTTCAGCTCGTAGAGCCAAAAGACGCTGACTAC
CTAGCACAGCGTTTCGGTGCCCGACCCTATGACCGAATTAGTCTAGGAGG
AAGAGAAACATTTATCTCCGAAGGCGACGGTGCTATAGGCATGGCTCAAG
GTGTACGCCATCTATCCTTGGGCCAAGGGCTATGCTCGTCTTGGACTTAC
ATCTTCGGAGGCAGCGATCGATGGGTCCGGGGTGGAGACAGTCACAAGTG
TTTTTCTTACGCAGCAGCTACAATGGAGGACTTGCGGAGAAGATGGACAA
CGCTTCAGCCGAGAACGGGTCTTGCTTGTCAGGTAGTACTCAGGGCTCCA
AGCGACGGAATGCTGGCGGAATACGCCGGCAGCATCTCTCGCTTGCTTAC
CCTAACACTAAATTGGCTAGAGTGGGACCCGCCTATATACTCTTTGCTTC
AACATACCACCGCAGCCACAGCTGAATCATGTTTAGCATGTGATAAGTCG
ATGTCTTCATGCCCCGTGGTAGCAGGGGGCGGTGCGTCCGAAGTGTCGCT
GCATCTTCTGTTTAAAGATCTGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1721:4246..6220-

>mRNA_H-paniculata_contig1721.4018.1 ID=mRNA_H-paniculata_contig1721.4018.1|Name=mRNA_H-paniculata_contig1721.4018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig1721:4246..6220- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCAAGGTGTACGCCATCTATCCTTGGGCCAAGGGCTATGCTCGTC
TTGGACTTACATCTTCGGAGGCAGCGATCGATGGGTCCGGGGTGGAGACA
GTCACAAGTGTTTTTCTTACGCAGCAGCTACAATGGAGGACTTGCGGAGA
AGATGGACAACGCTTCAGCCGAGAACGGGTCTTGCTTGTCAGGTAGTACT
CAGGGCTCCAAGCGACGGAATGCTGGCGGAATACGCCGGCAGCATCTCTC
GCTTGCTTACCCTAACACTAAATTGGCTAGAGTGGGACCCGCCTATATAC
TCTTTGCTTCAACATACCACCGCAGCCACAGCTGAATCATGTTTAGCATG
TGATAAGTCGATGTCTTCATGCCCCGTGGTAGCAGGGGGCGGTGCGTCCG
AAGTGTCGCTGCATCTTCTGTTTAAAGATCTGGCGATGGCTCAAGGTGTA
CGCCATCTATCCTTGGGCCAAGGGCTATGCTCGTCTTGGACTTACATCTT
CGGAGGCAGCGATCGATGGGTCCGGGGTGGAGACAGTCACAAGTGTTTTT
CTTACGCAGCAGCTACAATGGAGGACTTGCGGAGAAGATGGACAACGCTT
CAGCCGAGAACGGGTCTTGCTTGTCAGGTAGTACTCAGGGCTCCAAGCGA
CGGAATGCTGGCGGAATACGCCGGCAGCATCTCTCGCTTGCTTACCCTAA
CACTAAATTGGCTAGAGTGGGACCCGCCTATATACTCTTTGCTTCAACAT
ACCACCGCAGCCACAGCTGAATCATGTTTAGCATGTGATAAGTCGATGTC
TTCATGCCCCGTGGTAGCAGGGGGCGGTGCGTCCGAAGTGTCGCTGCATC
TTCTGTTTAAAGATCTGGCG
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