mRNA_H-paniculata_contig1713.3980.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1713.3980.1
Unique NamemRNA_H-paniculata_contig1713.3980.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1713.3980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1713contigH-paniculata_contig1713:4345..6025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size814
Cds size558
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1713.3980.1prot_H-paniculata_contig1713.3980.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1713 4345..4902 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929352.5271273-CDS-H-paniculata_contig1713:4344..49021622929352.5271273-CDS-H-paniculata_contig1713:4344..4902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1713 4345..4902 -
1691480826.7561803-CDS-H-paniculata_contig1713:4344..49021691480826.7561803-CDS-H-paniculata_contig1713:4344..4902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1713 4345..4902 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929352.5371904-UTR-H-paniculata_contig1713:4902..50921622929352.5371904-UTR-H-paniculata_contig1713:4902..5092Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1713 4903..5092 -
1691480826.765638-UTR-H-paniculata_contig1713:4902..50921691480826.765638-UTR-H-paniculata_contig1713:4902..5092Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1713 4903..5092 -
1622929352.549284-UTR-H-paniculata_contig1713:5961..60251622929352.549284-UTR-H-paniculata_contig1713:5961..6025Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1713 5962..6025 -
1691480826.7799797-UTR-H-paniculata_contig1713:5961..60251691480826.7799797-UTR-H-paniculata_contig1713:5961..6025Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1713 5962..6025 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1713.3980.1

>prot_H-paniculata_contig1713.3980.1 ID=prot_H-paniculata_contig1713.3980.1|Name=mRNA_H-paniculata_contig1713.3980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
MILKKQHHQVISFPLASRNRRLQQASTAALLALTPMGSTTGFVPPAPTAA
IHVSSRCATAPGSMRPLWDTRSVRASNHQSLRVGGNSVRLGRQPIATSLA
NSGLAHVLALEGDDVGPLVGGIGSAASSANGRRGRMSVAALRAVSNSGGG
GGNSNRSGSGQHKKISNTNNNSRPRRSKNGYGYAPA
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mRNA from alignment at H-paniculata_contig1713:4345..6025-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1713.3980.1 ID=mRNA_H-paniculata_contig1713.3980.1|Name=mRNA_H-paniculata_contig1713.3980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1681bp|location=Sequence derived from alignment at H-paniculata_contig1713:4345..6025- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGTATTGTCAGGTGTTCTTGTTCGGTGTGGCTCCTGCACCTCGCGAGG
GTCCGTCTAAAGAGGTAGGTTATGTCTGGGTATAGGTGAAGTCAAGGTGT
ACTATGTGAGGATGCCTCGGTCATTTGTCCTGTTCAAATCAGGATAGGGA
AGGACCCGCTGTGTGATGAAGTGGCCGACCCTGTACTGTCGCTTTGGAAG
TCATCGTGATTGAAAAATACCTCAAGACAGTTTGGTGTGTCCATATGCGA
GCGGTGGGGAGCAATTCCGTTCAAATAGCGAGAGAGAGGAGAGGGGGCGG
GAGCTGACTTGCCCATACCTGTCGTGTTGTGTAGGTCCGTGCTGATTTTT
CTTCATTATGAGATCGCATGGTTATGTGCGTACTTCGCCCCCTACATCCA
CCGTCGCTTGTTTCGCGATCGATGGCGTATGATGGACCTGACATGTGCTC
TCTACTGGTAATACCCACTCGTTACTCAACACATGTAGCACCCCCGCCCC
CTTCTGCATACAGCCCTGGAATAACTAATGAATGCCCACCAAATGTCGTG
CTAGTTTTTTGTCGAACTTGGAGATATTTCAAATTGCAAGCTGTTGGTGT
ACTCTGAGTCCATACCGGCAGTAGAATATCGTACACTTGACAGACGTTCC
TTCTGACCGGTGCCTACCTCTTCGTGAACAAAGATTGTACACTCTCGTTA
TTGCTGTTACATGTCCATCATATGTCCCTCTTGCATTATTCCAAACCGAA
AATCCCCCTCGTCGTATAGGAGGAGTGCAATCGAAATCTTCCGCCTTTGC
CTTGCAAAGCCCACCACGAGCGAGTACTATAGCTATATATCCCCTGACCC
ATCTTCCCCCTTGACGGCAACGCCCAATGCAATAAATGGTACCTGGCGGG
GCACGGATCGTGTGACACGCGTAACACAACTAGGGCCCACTGGAAAGATA
CGAGGCCGCCGCTCTACATCAAGGCATCAATCACTACACCCAGCGCGTGA
GTGCTTACACATTAAGGTAATAATTCATCCACCGCTGTTGCTGCTGTGTG
TTAGTTGACAGTAGAACGAGTGGAGAAGGCGGGGCAGTGGAAAACCGCAG
ACCGGACCCTCAACGGGTCGAAAATGATCCTGAAGAAGCAGCACCACCAG
GTCATCTCCTTTCCTCTCGCCTCGCGCAACAGACGACTGCAGCAGGCATC
CACAGCCGCTCTGCTGGCGCTGACGCCGATGGGGTCGACGACAGGCTTCG
TACCTCCGGCCCCGACCGCCGCCATCCACGTGTCGTCACGCTGCGCAACA
GCGCCCGGGTCTATGCGGCCGCTATGGGACACCCGATCCGTCCGGGCCAG
CAACCATCAGAGCCTAAGAGTCGGCGGCAATAGCGTCCGGTTAGGTCGTC
AACCAATCGCTACGTCGTTGGCCAACTCCGGCCTCGCGCACGTTCTAGCG
CTAGAGGGCGATGACGTCGGCCCCCTAGTAGGCGGAATAGGGAGCGCAGC
CAGCAGTGCAAATGGCCGAAGAGGTCGGATGAGCGTCGCCGCTCTTCGCG
CGGTCTCAAACAGTGGCGGCGGCGGCGGCAATAGTAACCGCAGCGGTAGC
GGTCAGCACAAGAAGATCAGCAACACGAACAACAACAGCAGACCCCGAAG
ATCAAAAAATGGATACGGCTACGCGCCCGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig1713:4345..6025-

>mRNA_H-paniculata_contig1713.3980.1 ID=mRNA_H-paniculata_contig1713.3980.1|Name=mRNA_H-paniculata_contig1713.3980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig1713:4345..6025- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCTGAAGAAGCAGCACCACCAGGTCATCTCCTTTCCTCTCGCCTC
GCGCAACAGACGACTGCAGCAGGCATCCACAGCCGCTCTGCTGGCGCTGA
CGCCGATGGGGTCGACGACAGGCTTCGTACCTCCGGCCCCGACCGCCGCC
ATCCACGTGTCGTCACGCTGCGCAACAGCGCCCGGGTCTATGCGGCCGCT
ATGGGACACCCGATCCGTCCGGGCCAGCAACCATCAGAGCCTAAGAGTCG
GCGGCAATAGCGTCCGGTTAGGTCGTCAACCAATCGCTACGTCGTTGGCC
AACTCCGGCCTCGCGCACGTTCTAGCGCTAGAGGGCGATGACGTCGGCCC
CCTAGTAGGCGGAATAGGGAGCGCAGCCAGCAGTGCAAATGGCCGAAGAG
GTCGGATGAGCGTCGCCGCTCTTCGCGCGGTCTCAAACAGTGGCGGCGGC
GGCGGCAATAGTAACCGCAGCGGTAGCGGTCAGCACAAGAAGATCAGCAA
CACGAACAACAACAGCAGACCCCGAAGATCAAAAAATGGATACGGCTACG
CGCCCGCAATGATCCTGAAGAAGCAGCACCACCAGGTCATCTCCTTTCCT
CTCGCCTCGCGCAACAGACGACTGCAGCAGGCATCCACAGCCGCTCTGCT
GGCGCTGACGCCGATGGGGTCGACGACAGGCTTCGTACCTCCGGCCCCGA
CCGCCGCCATCCACGTGTCGTCACGCTGCGCAACAGCGCCCGGGTCTATG
CGGCCGCTATGGGACACCCGATCCGTCCGGGCCAGCAACCATCAGAGCCT
AAGAGTCGGCGGCAATAGCGTCCGGTTAGGTCGTCAACCAATCGCTACGT
CGTTGGCCAACTCCGGCCTCGCGCACGTTCTAGCGCTAGAGGGCGATGAC
GTCGGCCCCCTAGTAGGCGGAATAGGGAGCGCAGCCAGCAGTGCAAATGG
CCGAAGAGGTCGGATGAGCGTCGCCGCTCTTCGCGCGGTCTCAAACAGTG
GCGGCGGCGGCGGCAATAGTAACCGCAGCGGTAGCGGTCAGCACAAGAAG
ATCAGCAACACGAACAACAACAGCAGACCCCGAAGATCAAAAAATGGATA
CGGCTACGCGCCCGCA
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