mRNA_H-paniculata_contig17122.3977.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17122.3977.1 vs. uniprot
Match: D8LEB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB5_ECTSI) HSP 1 Score: 306 bits (783), Expect = 1.940e-97 Identity = 147/217 (67.74%), Postives = 180/217 (82.95%), Query Frame = 1
Query: 1 CVELSQQAAGWITDVRLARRIMHFTIVYAYTVKQYLRREQLIMEDLEGLVDSAEVRRMNKLPPAVMPYYCTDVIRQCIKKGLTDHPQVHGVQAVARGIDIPVSNLSCQFSDMARVKNTPQPDVFRVMLHMFTVIYLLLLPVISYNAMGYWIVPEVFFTSYLMLGLQLAAKYLEDPFGYDLSDLALDEYVSNIASQCRAAFYLGEKSDVDLTLSDGGA 651
CVEL+QQAA WI D +LARRIM+ ++ +AY VKQ LRREQL +++EG++D+AEV +N LPP VMPYYCT+V+RQCIKKGL D PQ G QAVARGID+PVS LS QF+DM RV+NTPQPD FRVMLHMFT++YLL+LPVISY+ +GY++V E+ T+YLMLGLQ+AA +LEDPFG D SDL LD +V+ IA+QCRAAFYLG K+ DLTL GGA
Sbjct: 103 CVELTQQAAVWIDDTQLARRIMNISVTFAYVVKQILRREQLFADEMEGVIDAAEVELINNLPPLVMPYYCTEVMRQCIKKGLADSPQAFGTQAVARGIDVPVSQLSVQFADMERVRNTPQPDCFRVMLHMFTLLYLLVLPVISYDTLGYFVVLEMLVTAYLMLGLQIAADHLEDPFGRDESDLQLDRFVAEIAAQCRAAFYLGSKNGADLTLDGGGA 319
BLAST of mRNA_H-paniculata_contig17122.3977.1 vs. uniprot
Match: UPI00190CB8D6 (bestrophin n=1 Tax=Noviherbaspirillum pedocola TaxID=2801341 RepID=UPI00190CB8D6) HSP 1 Score: 72.0 bits (175), Expect = 2.740e-11 Identity = 55/208 (26.44%), Postives = 97/208 (46.63%), Query Frame = 1
Query: 1 CVEL-SQQAAGWITDVRLARRIMHFTIVYAYTVKQYLRREQLIMEDLEGLVDSAEVRRMNKLP--PAVMPYYCTDVIRQCIKKGLTDHPQVHGVQAVARGIDIPVSNLSCQFSDMARVKNTPQPDVFRVMLHMFTVIYLLLLPVISYNAMGYWIVPEVFFTSYLMLGLQLAAKYLEDPFGYDLSDLALDEYVSNIASQCRAAFYLGEK 615
C+ L + AG + + R++++ I Y + ++ +LR E ++ L+ +AE RRM K P + + +R C+++G D + ID +S++ + R+KNTP P + ++LH +Y LLP +++GY V +Y GL +E+PFG +DL L+ I R + LG+K
Sbjct: 100 CLSLIGPEPAGGVRQADIRRQMIYRAIAYVHALRHHLRDSDGAAE-VKPLLPAAEWRRMTKATNKPHYLMERMGEDLRLCLQQGRID-------SVLMASIDATLSSMVAASAACERIKNTPIPFSYTLLLHRTAYLYCFLLPFGLVDSIGYMTPLVVSIVAYTFFGLDALGDEIEEPFGVSANDLPLEAICRGIEINLRES--LGDK 297
BLAST of mRNA_H-paniculata_contig17122.3977.1 vs. uniprot
Match: UPI001D0D2815 (hypothetical protein n=1 Tax=Synechococcus sp. PCC 7336 TaxID=195250 RepID=UPI001D0D2815) HSP 1 Score: 72.0 bits (175), Expect = 3.100e-11 Identity = 54/201 (26.87%), Postives = 99/201 (49.25%), Query Frame = 1
Query: 37 TDVRLARRIMHFTIVYAYTVKQYLRREQLIMEDLEGLVDSAEVRRMNKLP--PAVMPYYCTDVIRQCIKKGLTDHPQVHGVQAVARGIDIPVSNLSCQFSDMARVKNTPQPDVFRVMLHMFTVIYLLLLPVISYNAMGYWIVPEVFFTSYLMLGLQLAAKYLEDPFGYDLSDLALDEYVSNIASQCRAAFYLGEKSDVDLT 633
TD + +M +A K +LR E + ++L+ L+ A ++ P + ++ +++ + KG +V ID ++ L+ S R+ TP P +RV L +IY + LP + + +W +P V S+L+LG++ A+ LE+PFGY+++DL LD++ IAS L ++ ++LT
Sbjct: 117 TDFLEKQSVMRLLSAFAIATKLHLRGEA-VNDELKALLTPARAEQLEASSNRPFDIIFWIRCYLQKVLSKGEITESKVGA-------IDNMLNQLTGGVSGCERIITTPIPITYRVYLKRLILIYCIGLPFKTIPELTWWSLPIVAVVSFLLLGVEEVARELENPFGYNVNDLPLDDFCRTIASNVEHVLSL--ETQIELT 307
BLAST of mRNA_H-paniculata_contig17122.3977.1 vs. uniprot
Match: B1XPB6_SYNP2 (Uncharacterized protein family (UPF0187) superfamily n=8 Tax=unclassified Synechococcus TaxID=2626047 RepID=B1XPB6_SYNP2) HSP 1 Score: 71.2 bits (173), Expect = 5.070e-11 Identity = 48/176 (27.27%), Postives = 92/176 (52.27%), Query Frame = 1
Query: 40 DVRLARRIMHFTIVYAYTVKQYLRREQLIMEDLEGLVDSAEVRRM--NKLPPAVMPYYCTDVIRQCIKKGLTDHPQVHGVQAVARGIDIPVSNLSCQFSDMARVKNTPQPDVFRVMLHMFTVIYLLLLPVISYNAMGYWIVPEVFFTSYLMLGLQLAAKYLEDPFGYDLSDLALDE 561
+++ ++ ++ + +A K +LR +Q + + LE LV+ +V ++ +K P + ++ + Q +K Q++ + ++NL+ S R+ TP P +RV L +IY LP M +W +P V S+L+LG++ A+ LE+PFG+D++DL LD+
Sbjct: 116 EIQGKKQALNLLLAFAIATKLHLRGDQ-VNDRLEALVEPEQVTQLKDSKNRPLDIQFWLRTYLHQQLKLKNFGDAQLNMTTGM-------LNNLTDSVSGCERILTTPIPITYRVYLKRLILIYCFGLPFRLVPEMTWWAIPIVAVVSFLLLGVEEVARELENPFGFDVNDLPLDD 283
BLAST of mRNA_H-paniculata_contig17122.3977.1 vs. uniprot
Match: A0A139AZR5_GONPJ (UPF0187-domain-containing protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AZR5_GONPJ) HSP 1 Score: 70.5 bits (171), Expect = 1.250e-10 Identity = 37/112 (33.04%), Postives = 61/112 (54.46%), Query Frame = 1
Query: 229 CIKKGL-TDHPQVHGVQAVARGIDIPVSNLSCQFSDMARVKNTPQPDVFRVMLHMFTVIYLLLLPVISYNAMGYWIVPEVFFTSYLMLGLQLAAKYLEDPFGYDLSDLALDE 561
C++ GL T P + G + V + +L R+ TP P + ++L +IY LP Y +GYW++P +F SY ++G+++ A+ +E PFG+D SD+ LDE
Sbjct: 235 CVQDGLATLLPHIQGCENVLAQVVETTGSLE-------RIACTPVPKPYNILLRQMLLIYCFCLPFQLYKDLGYWMIPVIFLVSYCLIGVEMIARQIEMPFGFDASDINLDE 339
BLAST of mRNA_H-paniculata_contig17122.3977.1 vs. uniprot
Match: A0A4R3HXM7_PAULE (Putative membrane protein n=1 Tax=Paucimonas lemoignei TaxID=29443 RepID=A0A4R3HXM7_PAULE) HSP 1 Score: 70.1 bits (170), Expect = 1.340e-10 Identity = 59/193 (30.57%), Postives = 94/193 (48.70%), Query Frame = 1
Query: 34 ITDVRLARRIMHFTIVYAYTVKQYLRREQLIMEDLEGLVDSAEVRRMNKLPPA-----VMPYYCTDVIRQCIKKGLTDHPQVHGVQAVARGIDIPVSNLSCQFSDMARVKNTPQPDVFRVMLHMFTVIYLLLLPVISYNAMGYWIVPEVFFTSYLMLGLQLAAKYLEDPFGYDLSDLALDEYVSNIASQCRAA 597
+ DVR+ RI++ I +A+T++Q LR + E E L++ + R++ K PA +M DV R C+++G D P +A ID +S+++ + R+KNTP P + ++LH +Y LLP + G+ V +Y GL +E+PFG +DL LD I S R A
Sbjct: 116 LQDVRI--RIIYRAIAFAHTLRQTLRESGDLSELKEYLLEE-DWRQLGK--PAGNLNLLMLQMGRDV-RLCLEQGRIDGP-------IATAIDSTLSSMAAVAASCERIKNTPIPFSYSLLLHRTAYLYCFLLPFGLVDTTGFMTPVVVAIVAYTFFGLDALGDEIEEPFGTSDNDLPLDAICRTIESDLRKA 295
BLAST of mRNA_H-paniculata_contig17122.3977.1 vs. uniprot
Match: A0A0D7KEU9_9BURK (Bestrophin n=7 Tax=Acidovorax TaxID=12916 RepID=A0A0D7KEU9_9BURK) HSP 1 Score: 68.6 bits (166), Expect = 4.670e-10 Identity = 53/193 (27.46%), Postives = 91/193 (47.15%), Query Frame = 1
Query: 40 DVRLARRIMHFTIVYAYTVKQYLRREQ--LIMEDLEGLVDSAEVRRMNKLPPAVMPYYCTDVIRQCIKKGLTDHPQVHGVQAVARGIDIPVSNLSCQFSDMARVKNTPQPDVFRVMLHMFTVIYLLLLPVISYNAMGYWIVPEVFFTSYLMLGLQLAAKYLEDPFGYDLSDLALDEYVSNIASQCRAAFYLGE 612
DVR+ R++H I + + ++ +LR + +++ D V + + P A+M D +RQC+++G D +A GID +S ++ + R++NTP P + ++LH +Y LLP + G+ V +Y GL +E+PFG + +DL LD I R + LGE
Sbjct: 118 DVRV--RMVHRAIAFVHALRLHLRSQSDDALLQRWLPAQDWPRVAQSSVRPEAIMQGLGQD-LRQCLREGRID-------PCLAAGIDTTLSAMTASAASCERIRNTPVPFSYTLLLHRTAYLYCFLLPFGLVDTTGFMTPFVVAIVAYTFFGLDALGDEIEEPFGLESNDLPLDTLCRAIEINLRES--LGE 298
BLAST of mRNA_H-paniculata_contig17122.3977.1 vs. uniprot
Match: A0A401JFA1_9PROT (Probable membrane protein STY1534 n=1 Tax=Sulfuriferula multivorans TaxID=1559896 RepID=A0A401JFA1_9PROT) HSP 1 Score: 68.6 bits (166), Expect = 4.670e-10 Identity = 55/204 (26.96%), Postives = 95/204 (46.57%), Query Frame = 1
Query: 1 CVELSQQAAG-----WITDVRLARRIMHFTIVYAYTVKQYLRREQLIMEDLEGLVDSAEVRRMNKLP--PAVMPYYCTDVIRQCIKKGLTDHPQVHGVQAVARGIDIPVSNLSCQFSDMARVKNTPQPDVFRVMLHMFTVIYLLLLPVISYNAMGYWIVPEVFFTSYLMLGLQLAAKYLEDPFGYDLSDLALDEYVSNIASQCR 591
C L QQ A +TD+R+ R+++ I YA++++ LR + DL GL+ E R++ + P + + + QC+++G + +A ID +S++ + R+KNTP P + ++LH +Y LLP +++G+ V +Y GL +E+PFG +DL LD I R
Sbjct: 100 CQNLIQQPAPVSASLGLTDIRV--RMIYRAIAYAHSLRDRLRNAREA-SDLSGLLQEEERRQLGQSANGPNFLMFRMGADLGQCVREGRIE-------ACLAASIDATLSSMVVVNAGCERIKNTPIPFSYTLLLHRTAYLYCFLLPFGLVDSIGFMTPFVVAIVAYTFFGLDALGDEIEEPFGLSENDLPLDALCRTIEVNLR 293
BLAST of mRNA_H-paniculata_contig17122.3977.1 vs. uniprot
Match: A0A3C0YBM8_9BURK (Bestrophin n=1 Tax=Polaromonas sp. TaxID=1869339 RepID=A0A3C0YBM8_9BURK) HSP 1 Score: 68.6 bits (166), Expect = 4.670e-10 Identity = 53/201 (26.37%), Postives = 99/201 (49.25%), Query Frame = 1
Query: 19 QAAGWITDVRLARRIMHFTIVYAYTVKQYLRREQLIMEDLEGLVDSAEVRRMNKLP--PAVMPYYCTDVIRQCIKKGLTDHPQVHGVQAVARGIDIPVSNLSCQFSDMARVKNTPQPDVFRVMLHMFTVIYLLLLPVISYNAMGYWIVPEVFFTSYLMLGLQLAAKYLEDPFGYDLSDLALDEYVSNIASQCRAAFYLGEK 615
QA+ +TD R+ R+++ I +A+ ++Q+LR + L+ L+ +E +++ K P + + + C+K+G D +A GID +S+++ R+K+TP P + ++LH +Y LLP +++G+ V +Y GL +E+PFG + +DL LD I R + LG++
Sbjct: 111 QASRGLTDARV--RMIYRAIAFAHALRQHLR-DDAATTGLKNLLLESEWQQIGKSSNKPDFLMMRMGEDLGLCLKEGRID-------SCLAAGIDATLSSMTAAAVGCERIKSTPIPFSYTLLLHRTAYLYCFLLPFGLVDSIGFMTPFVVAIVAYTFFGLDALGDEIEEPFGLESNDLPLDTICRTIEINLRES--LGDE 299
BLAST of mRNA_H-paniculata_contig17122.3977.1 vs. uniprot
Match: A0A418XGI5_9BURK (Bestrophin n=1 Tax=Massilia cavernae TaxID=2320864 RepID=A0A418XGI5_9BURK) HSP 1 Score: 68.6 bits (166), Expect = 4.670e-10 Identity = 55/193 (28.50%), Postives = 93/193 (48.19%), Query Frame = 1
Query: 34 ITDVRLARRIMHFTIVYAYTVKQYLRREQLIMEDLEGLVDSAEVRRMNKL---PPAVMPYYCTDVIRQCIKKGLTDHPQVHGVQAVARGIDIPVSNLSCQFSDMARVKNTPQPDVFRVMLHMFTVIYLLLLPVISYNAMGYWIVPEVFFTSYLMLGLQLAAKYLEDPFGYDLSDLALDEYVSNIASQCRAAFY 603
+ DVR+ R+++ I +A++++ LR + L LV + E +M K P +M D +R C+K+G D +A ID +S+++ + R+KNTP P + ++LH IY LLP +++G+ V +Y GL +E+PFG + +DL LD I R+A +
Sbjct: 116 LEDVRV--RMVYRAIAFAHSLRDLLRNRPS-PDGLRQLVLAPEFAKMEKAANKPDYLMQQMGKD-LRLCLKEGRID-------PCLAAAIDSTLSSMTAAAASCERIKNTPIPFSYTLLLHRTAYIYCFLLPFGLVDSIGFMTPFVVAVVAYTFFGLDALGDEIEEPFGVEPNDLPLDAICRAIEIDLRSALH 297 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17122.3977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17122.3977.1 >prot_H-paniculata_contig17122.3977.1 ID=prot_H-paniculata_contig17122.3977.1|Name=mRNA_H-paniculata_contig17122.3977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=225bp CVELSQQAAGWITDVRLARRIMHFTIVYAYTVKQYLRREQLIMEDLEGLVback to top mRNA from alignment at H-paniculata_contig17122:1775..5048- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17122.3977.1 ID=mRNA_H-paniculata_contig17122.3977.1|Name=mRNA_H-paniculata_contig17122.3977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3274bp|location=Sequence derived from alignment at H-paniculata_contig17122:1775..5048- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17122:1775..5048- >mRNA_H-paniculata_contig17122.3977.1 ID=mRNA_H-paniculata_contig17122.3977.1|Name=mRNA_H-paniculata_contig17122.3977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1350bp|location=Sequence derived from alignment at H-paniculata_contig17122:1775..5048- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |