mRNA_H-paniculata_contig17121.3976.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17121.3976.1 vs. uniprot
Match: D7G5R3_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R3_ECTSI) HSP 1 Score: 178 bits (452), Expect = 1.960e-49 Identity = 104/173 (60.12%), Postives = 119/173 (68.79%), Query Frame = 1
Query: 1 RSSLSRRSSSIEELTMRDRQINDGSFKHGLSTLGFKLSEAAMTEMYRKLDVNKDGVIDLMEFTRFCLEIPSMAWKAERARRGIVSG-----ADRELDKAARDMANEALNNTASGLDSIAGGDGGLSAAAAAESKEPKVSLGRTVFRGEKFFWRTKYLIEVVVQLNAKEGFMAV 504
RSS+SRRSS EE MRDR I SF+HGL+TLGF +S +M+ +LD N DG IDL EFTRFCLEIPSM WKAERARRGI+ DREL+KAARDMANE T S D+ GG GG A EP V LG+ +RGEKFFWRTK LIEVVVQLN +GF+A+
Sbjct: 277 RSSMSRRSSLAEEAMMRDRLITSASFQHGLATLGFNISTEETAKMFDQLDANGDGSIDLAEFTRFCLEIPSMTWKAERARRGILGNNAGEDGDRELEKAARDMANE----TVSANDAAEGGLGGELA-----KLEPLVHLGKIFYRGEKFFWRTKDLIEVVVQLNEAKGFLAI 440
BLAST of mRNA_H-paniculata_contig17121.3976.1 vs. uniprot
Match: D8LSJ9_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSJ9_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 7.980e-13 Identity = 48/146 (32.88%), Postives = 69/146 (47.26%), Query Frame = 1
Query: 76 FKHGLSTLG---FKLSEAAMTEMYRKLDVNKDGVIDLMEFTRFCLEIPSMAWKAERARRGIVSGADRELDKAARDMANEALNNTASGLDSIAGGDGGLSAAAAAESKEPKVSLGRTVFRGEKFFWRTKYLIEVVVQLNAKEGFMAV 504
F+ L LG F L E + + D + +G ++L EF FCL IPS+ W+AE+ARR + + EL+ AAR +A S V +G V +G +FFWR+K I+V + LNA EG M +
Sbjct: 148 FESALRKLGQRAFDLDEMELEHLVTVFDTDGNGTVELDEFMTFCLSIPSLPWRAEKARRLNNAESKDELNVAARKIARR-------------------------RSSLRAVPIGELVHQGSRFFWRSKETIDVALHLNADEGLMTI 268
BLAST of mRNA_H-paniculata_contig17121.3976.1 vs. uniprot
Match: A0A835YNE5_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNE5_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 2.960e-11 Identity = 46/135 (34.07%), Postives = 65/135 (48.15%), Query Frame = 1
Query: 88 LSTLGFKLSEAAMTEMYRKLDVNKDGVIDLMEFTRFCLEIPSMAWKAERARRGIVSGADRELDKAARDMANEALNNTASGLDSIAGGDGGLSAAAAAESKEPKVSLGRTVFRGEKFFWRTKYLIEVVVQLNAKEG 492
LS F LS A + E+ D N++G I+L EF FC+ IPS+AWKAERARR L +AAR+ +E +T +D LG + + FFWR++ ++VV+ N EG
Sbjct: 75 LSPQHFPLSAAELDELMAHFDANRNGRIELSEFMEFCMAIPSLAWKAERARRMSAVDGPEALTEAARN--SERRRSTCKAVD-----------------------LGEKIHDRKMFFWRSQQNLDVVLHENIGEG 184
BLAST of mRNA_H-paniculata_contig17121.3976.1 vs. uniprot
Match: D8LCP2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP2_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 9.660e-8 Identity = 43/129 (33.33%), Postives = 62/129 (48.06%), Query Frame = 1
Query: 148 DVNKDGVIDLMEFTRFCLEIPSMAWKAERARR---GIVSGA-----DREL--DKAARDMANEALNNTASGLDSIAGGDGGLSAAAAAESKEPKVSLGRTVFRGEKFFWRTKYLIEVVVQLNAKEGFMAV 504
D + G I+L EF R+CL+I +MAWKAER RR G SG D E+ D+AA MA E A A ++P+ LG ++ G K FWRT + + + N ++ +A+
Sbjct: 138 DTDGSGTIELSEFIRWCLDIDTMAWKAERVRRTTGGQTSGGHGKRGDGEIGIDEAAARMAGEV-------------------AQAQLPPEQPRFPLGTLIYEGSKLFWRTGESLRIAMHENKEKHCIAI 247
BLAST of mRNA_H-paniculata_contig17121.3976.1 vs. uniprot
Match: A0A7S1BFL3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BFL3_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 4.660e-7 Identity = 42/142 (29.58%), Postives = 65/142 (45.77%), Query Frame = 1
Query: 52 DRQINDGSFKHGLSTLGFKLSEAA----MTEMYRKLDVNKDGVIDLMEFTRFCLEIPSMAWKAERARRGIVSGADRELDKAARDMANEALNNTASGLDSIAGGDGGLSAAAAAESKEPKVSLGRTVFRGEKFFWRTKYLIEV 465
D ++ SFK + L K +T++ + D+N DG + +EF +CL IPS+AWKA + R V G + EL K + M A + T + S A S+ + G VFR K +W+T ++V
Sbjct: 16 DYYVSMESFKRSMVKLAMKFGGQIDFNELTKIAQHFDINNDGRVSKVEFKLYCLNIPSIAWKAAKKRMESVGGVN-ELRKLSEKMRPAARSRTEEATSRLKI-KRRRSLMIEAPSESDYIPCGPEVFRSTKLYWKTNTSVDV 155 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17121.3976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17121.3976.1 >prot_H-paniculata_contig17121.3976.1 ID=prot_H-paniculata_contig17121.3976.1|Name=mRNA_H-paniculata_contig17121.3976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=168bp RSSLSRRSSSIEELTMRDRQINDGSFKHGLSTLGFKLSEAAMTEMYRKLDback to top mRNA from alignment at H-paniculata_contig17121:767..5145+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17121.3976.1 ID=mRNA_H-paniculata_contig17121.3976.1|Name=mRNA_H-paniculata_contig17121.3976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4379bp|location=Sequence derived from alignment at H-paniculata_contig17121:767..5145+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17121:767..5145+ >mRNA_H-paniculata_contig17121.3976.1 ID=mRNA_H-paniculata_contig17121.3976.1|Name=mRNA_H-paniculata_contig17121.3976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at H-paniculata_contig17121:767..5145+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |