mRNA_H-paniculata_contig171.3968.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig171.3968.1
Unique NamemRNA_H-paniculata_contig171.3968.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig171.3968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig171contigH-paniculata_contig171:43995..44414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size422
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929350.2243285-CDS-H-paniculata_contig171:43994..443421622929350.2243285-CDS-H-paniculata_contig171:43994..44342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig171 43995..44342 +
1691480825.8773537-CDS-H-paniculata_contig171:43994..443421691480825.8773537-CDS-H-paniculata_contig171:43994..44342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig171 43995..44342 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929350.2483635-UTR-H-paniculata_contig171:44342..444141622929350.2483635-UTR-H-paniculata_contig171:44342..44414Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig171 44343..44414 +
1691480825.8876367-UTR-H-paniculata_contig171:44342..444141691480825.8876367-UTR-H-paniculata_contig171:44342..44414Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig171 44343..44414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig171.3968.1prot_H-paniculata_contig171.3968.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig171 43995..44342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig171.3968.1

>prot_H-paniculata_contig171.3968.1 ID=prot_H-paniculata_contig171.3968.1|Name=mRNA_H-paniculata_contig171.3968.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
ANRPLGCIAQAKHRRTIRNRHLLSATLCRRTERTNHKRRYRNRKRPPVRY
RNCAQPLGEEDVTHCPTDIGATCSWGKRAEGHAAISGRHTGQSLGPRGAS
RHIGSRGGRCKYRPR*
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mRNA from alignment at H-paniculata_contig171:43995..44414+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig171.3968.1 ID=mRNA_H-paniculata_contig171.3968.1|Name=mRNA_H-paniculata_contig171.3968.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=420bp|location=Sequence derived from alignment at H-paniculata_contig171:43995..44414+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAACCGTCCATTAGGTTGTATCGCCCAGGCGAAGCATCGGCGGACGAT
CCGCAATCGCCACTTGTTGAGTGCCACTCTCTGTCGACGCACAGAACGGA
CGAATCACAAGAGAAGGTATCGCAACCGGAAACGCCCTCCAGTGCGATAC
CGGAACTGCGCCCAGCCGCTGGGGGAGGAGGATGTCACCCATTGCCCAAC
CGACATCGGAGCTACATGCAGCTGGGGTAAACGAGCAGAGGGACACGCCG
CCATCAGTGGTAGGCATACAGGCCAGAGCCTCGGCCCACGGGGAGCATCC
AGACATATCGGTAGCAGGGGGGGGAGGTGTAAGTACAGGCCACGGTAAGG
ACTCGGCCCGACTATCCGACATTCTGGCGCAAGTAAAGGAGAAGATAAAT
GATCCATGGTTGAAGGCGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig171:43995..44414+

>mRNA_H-paniculata_contig171.3968.1 ID=mRNA_H-paniculata_contig171.3968.1|Name=mRNA_H-paniculata_contig171.3968.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig171:43995..44414+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAACCGTCCATTAGGTTGTATCGCCCAGGCGAAGCATCGGCGGACGAT
CCGCAATCGCCACTTGTTGAGTGCCACTCTCTGTCGACGCACAGAACGGA
CGAATCACAAGAGAAGGTATCGCAACCGGAAACGCCCTCCAGTGCGATAC
CGGAACTGCGCCCAGCCGCTGGGGGAGGAGGATGTCACCCATTGCCCAAC
CGACATCGGAGCTACATGCAGCTGGGGTAAACGAGCAGAGGGACACGCCG
CCATCAGTGGTAGGCATACAGGCCAGAGCCTCGGCCCACGGGGAGCATCC
AGACATATCGGTAGCAGGGGGGGGAGGTGTAAGTACAGGCCACGGTAAGC
AAACCGTCCATTAGGTTGTATCGCCCAGGCGAAGCATCGGCGGACGATCC
GCAATCGCCACTTGTTGAGTGCCACTCTCTGTCGACGCACAGAACGGACG
AATCACAAGAGAAGGTATCGCAACCGGAAACGCCCTCCAGTGCGATACCG
GAACTGCGCCCAGCCGCTGGGGGAGGAGGATGTCACCCATTGCCCAACCG
ACATCGGAGCTACATGCAGCTGGGGTAAACGAGCAGAGGGACACGCCGCC
ATCAGTGGTAGGCATACAGGCCAGAGCCTCGGCCCACGGGGAGCATCCAG
ACATATCGGTAGCAGGGGGGGGAGGTGTAAGTACAGGCCACGGTAA
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