mRNA_H-paniculata_contig17053.3951.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17053.3951.1
Unique NamemRNA_H-paniculata_contig17053.3951.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17053.3951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17053contigH-paniculata_contig17053:3771..4517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size648
Cds size648
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929348.2058046-CDS-H-paniculata_contig17053:3770..42901622929348.2058046-CDS-H-paniculata_contig17053:3770..4290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17053 3771..4290 +
1691480825.0404382-CDS-H-paniculata_contig17053:3770..42901691480825.0404382-CDS-H-paniculata_contig17053:3770..4290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17053 3771..4290 +
1622929348.2227004-CDS-H-paniculata_contig17053:4389..45171622929348.2227004-CDS-H-paniculata_contig17053:4389..4517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17053 4390..4517 +
1691480825.0549395-CDS-H-paniculata_contig17053:4389..45171691480825.0549395-CDS-H-paniculata_contig17053:4389..4517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17053 4390..4517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17053.3951.1prot_H-paniculata_contig17053.3951.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17053 3771..4517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17053.3951.1

>prot_H-paniculata_contig17053.3951.1 ID=prot_H-paniculata_contig17053.3951.1|Name=mRNA_H-paniculata_contig17053.3951.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=216bp
GFSADVTCINCSFLSNEASETGGAIAVTGSNLSFQGETYCGQNRASGNGG
FLVATASSLAFAGNSTFEDNVSLREGGVIYCDEGEVDFTGNGNFYNNAAT
RSGGGIWVHNTFLRFSGEESSVNFVNNSATALFGGAVTLTGQEPLQLDAG
SVLFMNNSAPTGGAAYAFGRAQNKDQLKLINCIFEDNYAVGDGGAVVVSS
GRVQINDTVFRNNVAG
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mRNA from alignment at H-paniculata_contig17053:3771..4517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17053.3951.1 ID=mRNA_H-paniculata_contig17053.3951.1|Name=mRNA_H-paniculata_contig17053.3951.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=747bp|location=Sequence derived from alignment at H-paniculata_contig17053:3771..4517+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATTCTCCGCGGACGTGACATGCATCAACTGTAGCTTTCTCAGTAATGA
AGCGAGCGAAACTGGCGGCGCAATAGCAGTGACGGGGTCAAACCTGTCCT
TCCAGGGGGAAACGTATTGCGGTCAGAATCGTGCTAGCGGCAACGGAGGC
TTCCTAGTCGCGACGGCGAGCTCCCTTGCCTTCGCAGGAAACTCGACATT
CGAGGATAATGTCTCACTCCGAGAAGGGGGGGTCATATATTGCGATGAAG
GTGAAGTGGATTTCACGGGAAACGGCAATTTTTACAACAACGCGGCAACT
CGCTCGGGCGGCGGGATTTGGGTCCACAACACCTTCTTGCGTTTTTCTGG
CGAGGAGAGCTCGGTTAACTTTGTCAACAACAGCGCCACCGCGTTATTCG
GTGGCGCCGTCACGCTGACCGGTCAAGAGCCGCTGCAGCTGGACGCGGGG
TCTGTGCTCTTCATGAATAACTCGGCGCCTACGGGCGGGGCGGCGTATGC
CTTCGGGCGGGCGCAGAACAGTATCGTCGATGGGGCACACTTCGTCTCTA
ACTGGGCGAGCCTGAACGGGGGGGCCTTCGTAATGGATCGTATTGGTGGC
CGGGAAGCTTCGGAAGGAGAGGATCAGCTCAAGCTGATCAATTGTATTTT
TGAGGACAACTATGCGGTGGGAGATGGAGGCGCGGTGGTCGTGTCTAGCG
GACGTGTGCAAATAAATGATACTGTCTTCAGGAACAACGTAGCAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig17053:3771..4517+

>mRNA_H-paniculata_contig17053.3951.1 ID=mRNA_H-paniculata_contig17053.3951.1|Name=mRNA_H-paniculata_contig17053.3951.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1296bp|location=Sequence derived from alignment at H-paniculata_contig17053:3771..4517+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATTCTCCGCGGACGTGACATGCATCAACTGTAGCTTTCTCAGTAATGA
AGCGAGCGAAACTGGCGGCGCAATAGCAGTGACGGGGTCAAACCTGTCCT
TCCAGGGGGAAACGTATTGCGGTCAGAATCGTGCTAGCGGCAACGGAGGC
TTCCTAGTCGCGACGGCGAGCTCCCTTGCCTTCGCAGGAAACTCGACATT
CGAGGATAATGTCTCACTCCGAGAAGGGGGGGTCATATATTGCGATGAAG
GTGAAGTGGATTTCACGGGAAACGGCAATTTTTACAACAACGCGGCAACT
CGCTCGGGCGGCGGGATTTGGGTCCACAACACCTTCTTGCGTTTTTCTGG
CGAGGAGAGCTCGGTTAACTTTGTCAACAACAGCGCCACCGCGTTATTCG
GTGGCGCCGTCACGCTGACCGGTCAAGAGCCGCTGCAGCTGGACGCGGGG
TCTGTGCTCTTCATGAATAACTCGGCGCCTACGGGCGGGGCGGCGTATGC
CTTCGGGCGGGCGCAGAACAGGATTCTCCGCGGACGTGACATGCATCAAC
TGTAGCTTTCTCAGTAATGAAGCGAGCGAAACTGGCGGCGCAATAGCAGT
GACGGGGTCAAACCTGTCCTTCCAGGGGGAAACGTATTGCGGTCAGAATC
GTGCTAGCGGCAACGGAGGCTTCCTAGTCGCGACGGCGAGCTCCCTTGCC
TTCGCAGGAAACTCGACATTCGAGGATAATGTCTCACTCCGAGAAGGGGG
GGTCATATATTGCGATGAAGGTGAAGTGGATTTCACGGGAAACGGCAATT
TTTACAACAACGCGGCAACTCGCTCGGGCGGCGGGATTTGGGTCCACAAC
ACCTTCTTGCGTTTTTCTGGCGAGGAGAGCTCGGTTAACTTTGTCAACAA
CAGCGCCACCGCGTTATTCGGTGGCGCCGTCACGCTGACCGGTCAAGAGC
CGCTGCAGCTGGACGCGGGGTCTGTGCTCTTCATGAATAACTCGGCGCCT
ACGGGCGGGGCGGCGTATGCCTTCGGGCGGGCGCAGAACAAGGATCAGCT
CAAGCTGATCAATTGTATTTTTGAGGACAACTATGCGGTGGGAGATGGAG
GCGCGGTGGTCGTGTCTAGCGGACGTGTGCAAATAAATGATACTGTCTTC
AGGAACAACGTAGCAGGTAGGATCAGCTCAAGCTGATCAATTGTATTTTT
GAGGACAACTATGCGGTGGGAGATGGAGGCGCGGTGGTCGTGTCTAGCGG
ACGTGTGCAAATAAATGATACTGTCTTCAGGAACAACGTAGCAGGT
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