mRNA_H-paniculata_contig17046.3945.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17046.3945.1
Unique NamemRNA_H-paniculata_contig17046.3945.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17046.3945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17046contigH-paniculata_contig17046:2237..2666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size430
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17046.3945.1prot_H-paniculata_contig17046.3945.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17046 2318..2653 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929347.3397834-UTR-H-paniculata_contig17046:2236..23171622929347.3397834-UTR-H-paniculata_contig17046:2236..2317Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17046 2237..2317 +
1691480824.6259515-UTR-H-paniculata_contig17046:2236..23171691480824.6259515-UTR-H-paniculata_contig17046:2236..2317Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17046 2237..2317 +
1622929347.3743634-UTR-H-paniculata_contig17046:2653..26661622929347.3743634-UTR-H-paniculata_contig17046:2653..2666Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17046 2654..2666 +
1691480824.646579-UTR-H-paniculata_contig17046:2653..26661691480824.646579-UTR-H-paniculata_contig17046:2653..2666Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17046 2654..2666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929347.3561795-CDS-H-paniculata_contig17046:2317..26531622929347.3561795-CDS-H-paniculata_contig17046:2317..2653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17046 2318..2653 +
1691480824.6369-CDS-H-paniculata_contig17046:2317..26531691480824.6369-CDS-H-paniculata_contig17046:2317..2653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17046 2318..2653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17046.3945.1

>prot_H-paniculata_contig17046.3945.1 ID=prot_H-paniculata_contig17046.3945.1|Name=mRNA_H-paniculata_contig17046.3945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MQNSNTNKKWTKSRSQKANQPTAHILSVYCSVKLDYIYIIHLMKKAKYMY
IFHVFPKGDMMLRTIKQSNNLNHSCEKGTCKFFVANNPFFIGCNWLQVFP
GSCTTPWPTQT*
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mRNA from alignment at H-paniculata_contig17046:2237..2666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17046.3945.1 ID=mRNA_H-paniculata_contig17046.3945.1|Name=mRNA_H-paniculata_contig17046.3945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=430bp|location=Sequence derived from alignment at H-paniculata_contig17046:2237..2666+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCTCCAACACATAAACACAACCGCACCCTCGGCTGATCTCACGTTCAAC
TCGTTACAAAATTTCCAGCAGCAACACCGGCATGCAAAATTCCAACACCA
ATAAGAAATGGACGAAGTCTAGGTCGCAAAAGGCAAATCAACCCACAGCA
CACATCCTGAGCGTGTACTGTAGCGTGAAGCTTGACTACATCTACATCAT
ACACCTGATGAAAAAAGCGAAATATATGTATATTTTTCACGTTTTCCCTA
AAGGAGACATGATGCTACGAACGATCAAACAATCGAACAATCTTAACCAC
TCTTGCGAAAAAGGAACATGTAAATTCTTCGTTGCTAATAATCCATTTTT
CATTGGATGCAATTGGCTTCAAGTTTTTCCGGGCTCGTGCACCACACCTT
GGCCAACACAAACGTAATAACAGAAACAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17046:2237..2666+

>mRNA_H-paniculata_contig17046.3945.1 ID=mRNA_H-paniculata_contig17046.3945.1|Name=mRNA_H-paniculata_contig17046.3945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig17046:2237..2666+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAAATTCCAACACCAATAAGAAATGGACGAAGTCTAGGTCGCAAAA
GGCAAATCAACCCACAGCACACATCCTGAGCGTGTACTGTAGCGTGAAGC
TTGACTACATCTACATCATACACCTGATGAAAAAAGCGAAATATATGTAT
ATTTTTCACGTTTTCCCTAAAGGAGACATGATGCTACGAACGATCAAACA
ATCGAACAATCTTAACCACTCTTGCGAAAAAGGAACATGTAAATTCTTCG
TTGCTAATAATCCATTTTTCATTGGATGCAATTGGCTTCAAGTTTTTCCG
GGCTCGTGCACCACACCTTGGCCAACACAAACGTAAATGCAAAATTCCAA
CACCAATAAGAAATGGACGAAGTCTAGGTCGCAAAAGGCAAATCAACCCA
CAGCACACATCCTGAGCGTGTACTGTAGCGTGAAGCTTGACTACATCTAC
ATCATACACCTGATGAAAAAAGCGAAATATATGTATATTTTTCACGTTTT
CCCTAAAGGAGACATGATGCTACGAACGATCAAACAATCGAACAATCTTA
ACCACTCTTGCGAAAAAGGAACATGTAAATTCTTCGTTGCTAATAATCCA
TTTTTCATTGGATGCAATTGGCTTCAAGTTTTTCCGGGCTCGTGCACCAC
ACCTTGGCCAACACAAACGTAA
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