mRNA_H-paniculata_contig1700.3929.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1700.3929.1
Unique NamemRNA_H-paniculata_contig1700.3929.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1700.3929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1700contigH-paniculata_contig1700:15176..15879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size704
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1700.3929.1prot_H-paniculata_contig1700.3929.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1700 15179..15598 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929345.975973-UTR-H-paniculata_contig1700:15175..151781622929345.975973-UTR-H-paniculata_contig1700:15175..15178Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1700 15176..15178 +
1691480824.069901-UTR-H-paniculata_contig1700:15175..151781691480824.069901-UTR-H-paniculata_contig1700:15175..15178Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1700 15176..15178 +
1622929346.0115256-UTR-H-paniculata_contig1700:15598..158791622929346.0115256-UTR-H-paniculata_contig1700:15598..15879Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1700 15599..15879 +
1691480824.0903525-UTR-H-paniculata_contig1700:15598..158791691480824.0903525-UTR-H-paniculata_contig1700:15598..15879Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1700 15599..15879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929345.9928257-CDS-H-paniculata_contig1700:15178..155981622929345.9928257-CDS-H-paniculata_contig1700:15178..15598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1700 15179..15598 +
1691480824.0809314-CDS-H-paniculata_contig1700:15178..155981691480824.0809314-CDS-H-paniculata_contig1700:15178..15598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1700 15179..15598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1700.3929.1

>prot_H-paniculata_contig1700.3929.1 ID=prot_H-paniculata_contig1700.3929.1|Name=mRNA_H-paniculata_contig1700.3929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MCQSVSMRGRGGVEGAVNRDAKTLSIVLQSFIDGSIKLRKKLLCCVCSVF
KKGHTELGPSSSSSPCKSTRISVRRSCERETKRKRKREQQSIQAPNTLSS
CVSNGSDSLRHSDTTVLKLAVLGSRCQPCSYLQTTESPQ*
back to top

mRNA from alignment at H-paniculata_contig1700:15176..15879+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1700.3929.1 ID=mRNA_H-paniculata_contig1700.3929.1|Name=mRNA_H-paniculata_contig1700.3929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=704bp|location=Sequence derived from alignment at H-paniculata_contig1700:15176..15879+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGATGTGCCAATCTGTTTCTATGCGAGGGCGTGGTGGAGTGGAAGGTGC
TGTCAACAGAGACGCAAAGACGCTATCTATTGTGCTTCAATCCTTCATCG
ACGGTTCAATCAAACTCAGAAAGAAATTGCTCTGTTGTGTTTGCTCCGTG
TTCAAAAAAGGTCACACGGAGCTTGGACCGAGCAGTAGTTCTTCACCTTG
CAAATCGACGAGGATTTCAGTACGGCGGTCCTGCGAAAGAGAGACAAAGA
GGAAGAGGAAGCGAGAGCAACAGAGTATACAAGCACCCAACACACTCTCC
TCGTGTGTATCGAACGGCTCCGATTCACTGCGTCACAGCGATACGACGGT
GCTGAAGCTTGCCGTTCTTGGAAGTCGGTGCCAACCTTGTTCATATCTCC
AGACTACTGAGAGTCCACAGTAGTAGCAGACATGCAGCCTCAGTCACATT
ACCAGGCCTATACATACGGGGGCTACGCTCCGCCGCCAGGCTCGACTCCA
GCCCCAGCACCCCCAGCAGTTGCAGCATCGCATGGATACAACCAAGCAGG
CGTCCCAGGCGTGGCTGCAGTACCTGCAGTGTACGCCAACGCCACTTCCT
ACCCTCAACCTTGGCAACAACAGCCTCAGCACCAGCACCAGCACCAGCAC
CACGCGGTACAATTGCCCCTGCAGCACGCGACTAGTACCTCTGTCGTCTC
CCAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1700:15176..15879+

>mRNA_H-paniculata_contig1700.3929.1 ID=mRNA_H-paniculata_contig1700.3929.1|Name=mRNA_H-paniculata_contig1700.3929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig1700:15176..15879+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCCAATCTGTTTCTATGCGAGGGCGTGGTGGAGTGGAAGGTGCTGT
CAACAGAGACGCAAAGACGCTATCTATTGTGCTTCAATCCTTCATCGACG
GTTCAATCAAACTCAGAAAGAAATTGCTCTGTTGTGTTTGCTCCGTGTTC
AAAAAAGGTCACACGGAGCTTGGACCGAGCAGTAGTTCTTCACCTTGCAA
ATCGACGAGGATTTCAGTACGGCGGTCCTGCGAAAGAGAGACAAAGAGGA
AGAGGAAGCGAGAGCAACAGAGTATACAAGCACCCAACACACTCTCCTCG
TGTGTATCGAACGGCTCCGATTCACTGCGTCACAGCGATACGACGGTGCT
GAAGCTTGCCGTTCTTGGAAGTCGGTGCCAACCTTGTTCATATCTCCAGA
CTACTGAGAGTCCACAGTAGATGTGCCAATCTGTTTCTATGCGAGGGCGT
GGTGGAGTGGAAGGTGCTGTCAACAGAGACGCAAAGACGCTATCTATTGT
GCTTCAATCCTTCATCGACGGTTCAATCAAACTCAGAAAGAAATTGCTCT
GTTGTGTTTGCTCCGTGTTCAAAAAAGGTCACACGGAGCTTGGACCGAGC
AGTAGTTCTTCACCTTGCAAATCGACGAGGATTTCAGTACGGCGGTCCTG
CGAAAGAGAGACAAAGAGGAAGAGGAAGCGAGAGCAACAGAGTATACAAG
CACCCAACACACTCTCCTCGTGTGTATCGAACGGCTCCGATTCACTGCGT
CACAGCGATACGACGGTGCTGAAGCTTGCCGTTCTTGGAAGTCGGTGCCA
ACCTTGTTCATATCTCCAGACTACTGAGAGTCCACAGTAG
back to top