mRNA_H-paniculata_contig17.3922.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17.3922.1
Unique NamemRNA_H-paniculata_contig17.3922.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17.3922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17contigH-paniculata_contig17:22509..23968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size461
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17.3922.1prot_H-paniculata_contig17.3922.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17 22511..23968 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929344.4979963-UTR-H-paniculata_contig17:22508..225101622929344.4979963-UTR-H-paniculata_contig17:22508..22510Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17 22509..22510 +
1691480823.4356523-UTR-H-paniculata_contig17:22508..225101691480823.4356523-UTR-H-paniculata_contig17:22508..22510Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17 22509..22510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929344.510234-CDS-H-paniculata_contig17:22510..225571622929344.510234-CDS-H-paniculata_contig17:22510..22557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 22511..22557 +
1691480823.444239-CDS-H-paniculata_contig17:22510..225571691480823.444239-CDS-H-paniculata_contig17:22510..22557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 22511..22557 +
1622929344.5222943-CDS-H-paniculata_contig17:23224..235611622929344.5222943-CDS-H-paniculata_contig17:23224..23561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 23225..23561 +
1691480823.4517627-CDS-H-paniculata_contig17:23224..235611691480823.4517627-CDS-H-paniculata_contig17:23224..23561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 23225..23561 +
1622929344.5343764-CDS-H-paniculata_contig17:23893..239681622929344.5343764-CDS-H-paniculata_contig17:23893..23968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 23894..23968 +
1691480823.4593506-CDS-H-paniculata_contig17:23893..239681691480823.4593506-CDS-H-paniculata_contig17:23893..23968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 23894..23968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17.3922.1

>prot_H-paniculata_contig17.3922.1 ID=prot_H-paniculata_contig17.3922.1|Name=mRNA_H-paniculata_contig17.3922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
MIVDGELLPRGRKPSWVKKVSQQDVDIDYRESCLHPAERCVLCHLQNDVH
SHATDVKSHRKHQDKKSSNMKTSACATAICKSTSGRPPTPMSGQPDDAET
CVLASALRPKCSAAKQFPFYHAAVWQTKADQQSRSRAVRAVGLVEKAAKM
AR*
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mRNA from alignment at H-paniculata_contig17:22509..23968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17.3922.1 ID=mRNA_H-paniculata_contig17.3922.1|Name=mRNA_H-paniculata_contig17.3922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1460bp|location=Sequence derived from alignment at H-paniculata_contig17:22509..23968+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATGATTGTCGATGGGGAATTGCTGCCTCGGGGTCGGAAGCCGTCGTGG
TGAGCAATTAGAATTTTTCGCGACCGACGGATCGATTGTCACCGTTGTTG
GAAGTGAACAATATAGATGGGCAGCAGACCTTTATTCGAAAGGGGAATAC
TCTACGGTAGTTCTGAAGGACTTACGAATACAGCAGAAAATATGCTTCTA
CCGTTATGACGTATGCAGTCCATGACATTTGAGATGAGGAAATAGGTACA
GTACTTGCCACAGATATACTGATATACTGTGGTGAACGCAATGAGGGTAG
GGAGTAGCGGCGCACGATATAATTGTCATGGCGGCACCAGCCGTTTCGCT
TCGGCCCTTATGGTTCTTGGACTTTAGATTTTTTGTTCGTGAAGCAATGG
ACATGCATGTAGGGTGTAGTGATACTAGGAAAATATGCTTCTTGCTTTTA
ATAATTAATTCAATTCAATTCGATCAATTAAATCTGAGTAGAGTTTCTCT
GATGACGCGAGTGAAGCATACCTATGCGAAGAAGCACAGATAACCGTGGG
CTATAATTGTTGCGTGTAGTCGCCAACGAAGTACAAATCCCATCGTGTCC
ATGTGATGATGAGATGATCCCTACTGGCTTACTCACTTATTCACATGGTC
GATAGCAACCAGATATGCGCATGTAACACATGTCGCGGCACTCCTCCGTT
TACGCTTTCCACACAGGGTTAAAAAAGTTTCACAACAAGACGTGGATATA
GATTATCGTGAATCCTGTCTCCATCCTGCGGAGCGGTGCGTTTTGTGTCA
CTTGCAAAACGACGTACATTCACACGCCACGGATGTCAAGTCACATCGAA
AGCACCAAGACAAGAAGAGTTCCAACATGAAGACGTCAGCATGCGCGACA
GCAATATGCAAGAGTACTTCAGGCAGACCGCCGACCCCCATGTCTGGTCA
GCCAGACGACGCTGAAACGTGCGTTCTGGCCTCGGCTCTTCGCCCAAAGT
GTTCAGCCGCGAAGCAATTCCCGTTTTACCACGCTGCTGTCTGGCAAACC
AAGGTGAGGTTTTTCAATCGCTGTGATTTGGCACTCATGTTTTCAGCTAA
TAGTGCTGCACGTTCGCCAATAGTGTCCTATCCACTTACATTGTTTGGGG
TGGGATCAAATAAGAGACTGATGTATTGTGGTGAAATGCGATGTGCCATG
ACCCCCCCCGGCGCTCTCCTGTGTCGCAAGTAAATTGCTGCGTCAATGCG
CTCGGTCGCCCCCATGAAAGCAGCGGCATCAGGCTTTGAGGTATGGTACA
TGACGCCATCGCTTCGTCTTGAGAGATGAGCCTGAACCTGATACGTTGCA
CACCTCGCCATTATGTCCGTGCTTAACTACGCCAGGCTGACCAGCAGTCA
CGCTCGCGCGCGGTGCGTGCTGTCGGTCTCGTCGAAAAGGCTGCGAAGAT
GGCCAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17:22509..23968+

>mRNA_H-paniculata_contig17.3922.1 ID=mRNA_H-paniculata_contig17.3922.1|Name=mRNA_H-paniculata_contig17.3922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig17:22509..23968+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTGTCGATGGGGAATTGCTGCCTCGGGGTCGGAAGCCGTCGTGATG
ATTGTCGATGGGGAATTGCTGCCTCGGGGTCGGAAGCCGTCGTGGGTTAA
AAAAGTTTCACAACAAGACGTGGATATAGATTATCGTGAATCCTGTCTCC
ATCCTGCGGAGCGGTGCGTTTTGTGTCACTTGCAAAACGACGTACATTCA
CACGCCACGGATGTCAAGTCACATCGAAAGCACCAAGACAAGAAGAGTTC
CAACATGAAGACGTCAGCATGCGCGACAGCAATATGCAAGAGTACTTCAG
GCAGACCGCCGACCCCCATGTCTGGTCAGCCAGACGACGCTGAAACGTGC
GTTCTGGCCTCGGCTCTTCGCCCAAAGTGTTCAGCCGCGAAGCAATTCCC
GTTTTACCACGCTGCTGTCTGGCAAACCAAGGGTTAAAAAAGTTTCACAA
CAAGACGTGGATATAGATTATCGTGAATCCTGTCTCCATCCTGCGGAGCG
GTGCGTTTTGTGTCACTTGCAAAACGACGTACATTCACACGCCACGGATG
TCAAGTCACATCGAAAGCACCAAGACAAGAAGAGTTCCAACATGAAGACG
TCAGCATGCGCGACAGCAATATGCAAGAGTACTTCAGGCAGACCGCCGAC
CCCCATGTCTGGTCAGCCAGACGACGCTGAAACGTGCGTTCTGGCCTCGG
CTCTTCGCCCAAAGTGTTCAGCCGCGAAGCAATTCCCGTTTTACCACGCT
GCTGTCTGGCAAACCAAGGCTGACCAGCAGTCACGCTCGCGCGCGGTGCG
TGCTGTCGGTCTCGTCGAAAAGGCTGCGAAGATGGCCAGGTGAGCTGACC
AGCAGTCACGCTCGCGCGCGGTGCGTGCTGTCGGTCTCGTCGAAAAGGCT
GCGAAGATGGCCAGGTGA
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