mRNA_H-paniculata_contig17.3920.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17.3920.1
Unique NamemRNA_H-paniculata_contig17.3920.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17.3920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17contigH-paniculata_contig17:19799..20384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size214
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929344.0279536-CDS-H-paniculata_contig17:19798..199801622929344.0279536-CDS-H-paniculata_contig17:19798..19980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 19799..19980 +
1691480823.245879-CDS-H-paniculata_contig17:19798..199801691480823.245879-CDS-H-paniculata_contig17:19798..19980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 19799..19980 +
1622929344.0467522-CDS-H-paniculata_contig17:20354..203821622929344.0467522-CDS-H-paniculata_contig17:20354..20382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 20355..20382 +
1691480823.2613661-CDS-H-paniculata_contig17:20354..203821691480823.2613661-CDS-H-paniculata_contig17:20354..20382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 20355..20382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17.3920.1prot_H-paniculata_contig17.3920.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17 19799..20382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17.3920.1

>prot_H-paniculata_contig17.3920.1 ID=prot_H-paniculata_contig17.3920.1|Name=mRNA_H-paniculata_contig17.3920.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
STSLISAILYPQVVEFTVYVLGWTLAFIVGLYEFSVNQLMKRLRGEGILT
KAVRFLRGTIDIAGLYTVLL
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mRNA from alignment at H-paniculata_contig17:19799..20384+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17.3920.1 ID=mRNA_H-paniculata_contig17.3920.1|Name=mRNA_H-paniculata_contig17.3920.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=586bp|location=Sequence derived from alignment at H-paniculata_contig17:19799..20384+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCACTTCCCTAATTTCTGCAATCCTCTACCCTCAGGTGGTAGAATTTAC
CGTGTATGTGCTGGGTTGGACCCTGGCGTTCATAGTCGGTTTGTACGAGT
TCTCGGTGAACCAGCTCATGAAAAGATTACGTGGAGAAGGCATCCTGACG
AAGGCGGTTCGCTTCTTACGCGGAACTATTGAGTGAGTTAATGTCTTGGT
GTGCTGGCTGTGTCCTGTGTGCTTGCTACATTCGGCTGCGCTTGAACCAG
TCTTTCCGTGTCTGACTGGCCTTGATTGTTTTACGGAGTGCTGCGTTGGA
TCCGTCAGCAAGCGAAGATGCTTTCACCAACATTTGTACCAGTGAGGACG
AATTGAACATCAACCCGCGGGAAAGGTAGAGCTTCCTTTGTTGATGGTTA
CCTAACAATAACACGCTACCACTTGCCACAAGCGGTGTTAGTGGTCTGCT
CTACGTTGCGTGTTTCCAAATGTTTCTGAAGATGTCCATTTACCCTTAAT
ACTGCGTGATCGATTTTGCCCACGCCTCGTTCTCCTCACTCGCTGCCCAA
AAAAAGCATTGCCGGCCTTTACACTGTGCTACTGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig17:19799..20384+

>mRNA_H-paniculata_contig17.3920.1 ID=mRNA_H-paniculata_contig17.3920.1|Name=mRNA_H-paniculata_contig17.3920.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig17:19799..20384+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCACTTCCCTAATTTCTGCAATCCTCTACCCTCAGGTGGTAGAATTTAC
CGTGTATGTGCTGGGTTGGACCCTGGCGTTCATAGTCGGTTTGTACGAGT
TCTCGGTGAACCAGCTCATGAAAAGATTACGTGGAGAAGGCATCCTGACG
AAGGCGGTTCGCTTCTTACGCGGAACTATTGATCCACTTCCCTAATTTCT
GCAATCCTCTACCCTCAGGTGGTAGAATTTACCGTGTATGTGCTGGGTTG
GACCCTGGCGTTCATAGTCGGTTTGTACGAGTTCTCGGTGAACCAGCTCA
TGAAAAGATTACGTGGAGAAGGCATCCTGACGAAGGCGGTTCGCTTCTTA
CGCGGAACTATTGACATTGCCGGCCTTTACACTGTGCTACTGCATTGCCG
GCCTTTACACTGTGCTACTG
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