mRNA_H-paniculata_contig16967.3902.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16967.3902.1
Unique NamemRNA_H-paniculata_contig16967.3902.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16967.3902.1 vs. uniprot
Match: D7G8J8_ECTSI ([Skp1-protein]-hydroxyproline N-acetylglucosaminyltransferase, family GT60 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J8_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.180e-25
Identity = 53/73 (72.60%), Postives = 60/73 (82.19%), Query Frame = 2 
Query:    5 PDAIWMLYKEAADKWLLPMDRDNQGYNLFDVRDDNSIFVSLASYRDENCPATLVEMFSKADRPDYLFVGLVQQ 223
            P  +W LYK A D+WLLPMDR  +G NLFDVRDD SIFVSLASYRDENCP TL EM+SKAD P+ L++GLVQQ
Sbjct:  129 PQNVWDLYKAATDRWLLPMDRAFEGQNLFDVRDDKSIFVSLASYRDENCPTTLKEMYSKADHPELLYIGLVQQ 201
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BLAST of mRNA_H-paniculata_contig16967.3902.1 vs. uniprot
Match: A0A835YIW4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIW4_9STRA)

HSP 1 Score: 109 bits (273), Expect = 8.180e-23
Identity = 46/73 (63.01%), Postives = 62/73 (84.93%), Query Frame = 2 
Query:    5 PDAIWMLYKEAADKWLLPMDRDNQGYNLFDVRDDNSIFVSLASYRDENCPATLVEMFSKADRPDYLFVGLVQQ 223
            P  +W +YK++AD+WLLP+DRD  G  LF VR+D+SIFVS+ASYRDENCP T+ +M++KAD+P+ +FVGLVQQ
Sbjct:   81 PTDVWEMYKDSADRWLLPLDRDYVGVGLFPVREDDSIFVSIASYRDENCPNTIKDMYAKADKPERVFVGLVQQ 153
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BLAST of mRNA_H-paniculata_contig16967.3902.1 vs. uniprot
Match: A0A7S2V1L9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1L9_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.130e-15
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 2 
Query:    5 PDAIWMLYKEAADKWLLPMDRDNQGYNLFDVRDDNSIFVSLASYRDENCPATLVEMFSKADRPDYLFVGLVQQ 223
            P  +W  + + A+K L+PMD   +G+ +F VR+D SIFVS+ASYRDE CP TL  M+ KA  P+ +++GLVQQ
Sbjct:  126 PIDVWSAFYDLAEKELVPMDLKYRGHTMFPVREDRSIFVSVASYRDEYCPGTLKSMYEKAQAPELVYIGLVQQ 198
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BLAST of mRNA_H-paniculata_contig16967.3902.1 vs. uniprot
Match: A0A7S4D8P9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8P9_HETAK)

HSP 1 Score: 83.2 bits (204), Expect = 1.200e-13
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 2 
Query:    5 PDAIWMLYKEAADKWLLPMDRDNQGYNLFDVRDDNSIFVSLASYRDENCPATLVEMFSKADRPDYLFVGLVQQ 223
            P  +W  Y + A K L+P+D  N+G   +++RDD+SIF+SLASYRD  CP TL E+FSKA+ P+ + VG+VQQ
Sbjct:  213 PVNVWNAYYDLAMKHLIPIDEKNKGKLPYELRDDDSIFISLASYRDVRCPNTLEEIFSKAEHPERIRVGVVQQ 285
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BLAST of mRNA_H-paniculata_contig16967.3902.1 vs. uniprot
Match: A0A6U4ERP7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4ERP7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.800e-12
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 2 
Query:    5 PDAIWMLYKEAADKWLLPMDRDNQGYNLFDVRDDNSIFVSLASYRDENCPATLVEMFSKADRPDYLFVGLVQQ 223
            PD +W  + ++  K ++P DR+  G     +R D SIFVS+ASYRDE+CP TLV M+ +A  P+ +FVGLVQQ
Sbjct:   97 PDLVWAAFHKSTTKDVVPWDREYAGNLWAPIRKDESIFVSIASYRDESCPDTLVSMYHEALHPERIFVGLVQQ 169
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BLAST of mRNA_H-paniculata_contig16967.3902.1 vs. uniprot
Match: B7G2Q2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2Q2_PHATC)

HSP 1 Score: 69.3 bits (168), Expect = 3.680e-9
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 2 
Query:    8 DAIWMLYKEAADKWLLPMDRDNQGYNLFDVRDDNSIFVSLASYRDENCPATLVEMFSKADRPDYLFVGLVQQVRVRPSVRPSV---RSFVFDTDDDDC 292
            + +W  Y + A   L P DR+     +   RDD SIF+S+A+YRDENC  T+   ++KA  PD LF+GLVQQ       +  V   RS V    D+DC
Sbjct:  187 EGVWQAYHDLAVSTLYPWDREYL-QRMPPRRDDGSIFLSVATYRDENCYNTVYNAYAKAKNPDQLFIGLVQQ-NCHADCKSGVLANRSMVAVPPDEDC 282
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BLAST of mRNA_H-paniculata_contig16967.3902.1 vs. uniprot
Match: A0A7S2VAY7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAY7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.620e-9
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 2 
Query:    8 DAIWMLYKEAADKWLLPMDRDNQGYNLFDVRDDNSIFVSLASYRDENCPATLVEMFSKADRPDYLFVGLVQQ 223
            + IW  Y +   K L P D++     + + R D SIF+SLASYRDENC  T+   F KA  PD L+VGLVQQ
Sbjct:   88 EGIWRAYHDLTVKTLYPWDQEYL-QRMPERRTDGSIFLSLASYRDENCKTTIYNAFKKAQDPDKLYVGLVQQ 158
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BLAST of mRNA_H-paniculata_contig16967.3902.1 vs. uniprot
Match: A0A7R9VL74_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VL74_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.700e-9
Identity = 44/102 (43.14%), Postives = 54/102 (52.94%), Query Frame = 2 
Query:    8 DAIWMLYKEAADKWLLPMDRDNQGYNLFDVRDDNSIFVSLASYRDENCPATLVEMFSKADRPDYLFVGLVQQVRVRPSVRPSVRSFVFD-------TDDDDC 292
            D IW  Y +   K L P DR+     +   R+D SIF+SLASYRDENC  T+   + KA  PD LF+GLVQQ     +   + RS V D         DDDC
Sbjct:  159 DQIWEAYHDLTVKTLYPWDREYL-QRMPARRNDGSIFLSLASYRDENCLNTIKWAYEKAKNPDKLFIGLVQQ-----NCEANCRSGVLDGGKIVDVDPDDDC 254
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BLAST of mRNA_H-paniculata_contig16967.3902.1 vs. uniprot
Match: A0A7S3UTW3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTW3_HETAK)

HSP 1 Score: 68.6 bits (166), Expect = 6.130e-9
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 2 
Query:   14 IWMLYKEAADKWLLPMDRDNQGYNLFDVRDDNSIFVSLASYRDENCPATLVEMFSKADRPDYLFVGLVQQ 223
            +W +Y   A ++ +  D   +G   + +++D+SIF+S+ASYRD+ CPATL E+FSKA  P  + VGLVQQ
Sbjct:  119 VWSVYHSLAVRYFVSEDSRLKGQLPYHLKNDSSIFISMASYRDKLCPATLEEIFSKAAVPQKIQVGLVQQ 188
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BLAST of mRNA_H-paniculata_contig16967.3902.1 vs. uniprot
Match: A0A7S2MRK2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MRK2_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.800e-9
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 2 
Query:    8 DAIWMLYKEAADKWLLPMDRDNQGYNLFDVRDDNSIFVSLASYRDENCPATLVEMFSKADRPDYLFVGLVQQ 223
            D ++  Y   A K LLP D   +G  +FD+R+D+S+F+SLA+YR+     TL E FS A  PD LFVG V Q
Sbjct:   35 DEVFGTYHSLASKHLLPFDEVYRGKPIFDIRNDDSVFMSLAAYREHLLAPTLREAFSHATNPDKLFVGAVVQ 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16967.3902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8J8_ECTSI1.180e-2572.60[Skp1-protein]-hydroxyproline N-acetylglucosaminyl... [more]
A0A835YIW4_9STRA8.180e-2363.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V1L9_9STRA3.130e-1550.68Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S4D8P9_HETAK1.200e-1352.05Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U4ERP7_9STRA1.800e-1249.32Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
B7G2Q2_PHATC3.680e-940.82Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2VAY7_9STRA4.620e-948.61Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7R9VL74_9STRA4.700e-943.14Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S3UTW3_HETAK6.130e-945.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2MRK2_9STRA6.800e-947.22Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16967contigH-paniculata_contig16967:1805..4077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue2.5e-22
Seed eggNOG ortholog2880.D7G8J8
KEGG koko:K12244
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyltransferase (GlcNAc)
EggNOG OGs2ADDX@1,2RYTE@2759
Ec32 ortholog description[Skp1-protein]-hydroxyproline N-acetylglucosaminyltransferase, family GT60
Ec32 orthologEc-14_003270.1
EC2.4.1.229
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01003
Exons2
Model size1122
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16967.3902.1prot_H-paniculata_contig16967.3902.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16967 2617..4058 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929342.5127857-UTR-H-paniculata_contig16967:1804..26161622929342.5127857-UTR-H-paniculata_contig16967:1804..2616Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16967 1805..2616 -
1691480822.6396382-UTR-H-paniculata_contig16967:1804..26161691480822.6396382-UTR-H-paniculata_contig16967:1804..2616Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16967 1805..2616 -
1622929342.5647135-UTR-H-paniculata_contig16967:4058..40771622929342.5647135-UTR-H-paniculata_contig16967:4058..4077Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16967 4059..4077 -
1691480822.6695979-UTR-H-paniculata_contig16967:4058..40771691480822.6695979-UTR-H-paniculata_contig16967:4058..4077Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16967 4059..4077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929342.5330935-CDS-H-paniculata_contig16967:2616..28601622929342.5330935-CDS-H-paniculata_contig16967:2616..2860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16967 2617..2860 -
1691480822.6523821-CDS-H-paniculata_contig16967:2616..28601691480822.6523821-CDS-H-paniculata_contig16967:2616..2860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16967 2617..2860 -
1622929342.5493772-CDS-H-paniculata_contig16967:4011..40581622929342.5493772-CDS-H-paniculata_contig16967:4011..4058Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16967 4012..4058 -
1691480822.6609304-CDS-H-paniculata_contig16967:4011..40581691480822.6609304-CDS-H-paniculata_contig16967:4011..4058Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16967 4012..4058 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16967.3902.1

>prot_H-paniculata_contig16967.3902.1 ID=prot_H-paniculata_contig16967.3902.1|Name=mRNA_H-paniculata_contig16967.3902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
MLYKEAADKWLLPMDRDNQGYNLFDVRDDNSIFVSLASYRDENCPATLVE
MFSKADRPDYLFVGLVQQVRVRPSVRPSVRSFVFDTDDDDCDDNGR*
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mRNA from alignment at H-paniculata_contig16967:1805..4077-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16967.3902.1 ID=mRNA_H-paniculata_contig16967.3902.1|Name=mRNA_H-paniculata_contig16967.3902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2273bp|location=Sequence derived from alignment at H-paniculata_contig16967:1805..4077- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTCCTGATGCCATATGGATGCTCTACAAGGAGGCGGCGGATAAGTGGC
TTTTGCCAATGGATAGGTGAACATAACATAGCATTGGGCGAAGAGTGGTC
GTTATATTCGAAAGCAAAATTGACTATGGCAGGGTTGAGCTATGACTTGT
GTCTTTTTGGGGTTATTTTTCGAGGGTGTCCGTTAGTCTGTTGTTTATTC
GAAGACTATTTCATGTTTTCCTCCATAGCACACATGGGAGTGATGATACA
GTGATGCTCTCTTGTGAGGGTTGCCGTAATCCGTGTTGTGCGTTTGTTGA
AGAGGTGCGTGAATTCCTGGTGCTTGGTCATGACAAGCTTGGAACTCGAT
GTAGTGTGGACAGTATACTGTCCATCTATCAAGCAGCATACCACCCAAAT
ATCCGTCTAGTCCAGTCGAAATTCATTTCACCTGGTGGGCATGCGCGGTT
TGTTGTGGATGAGCTGTAGCAGGGGTGATGGAGGAGGAAGCACTGGTTCA
TGTACAGCTATCTGAACATCGTATACTCCAAGGTCGCACGTTGGGGTTAG
CCAGGCTAGCCCCAGGCTATGGCAATGGCTAATGGCTAATGGCTAGCACT
CCAAAGCATAAGTACTCTACTAGAATCTATGTATGGGGGCTGTACAATGA
AGCTTTAGGTTTCTCCTGTTTACTGTTAGATGTGTCATCACGTGCTCGGA
TGGTTGTCCCGCAATTTAACGCTTTTAGGCTGCACCTGTTGGGTCACAAG
AAACACACCCCTCCATGCATGAAGGTTGATACGACTATTAAAAATAATGT
TTTTGACATATTCCTCGTTATAGCTTGTTCAAATTCTAAGATAATAACCA
AGTAACCCAGAAGCTTGAAGACGTTGAACATACCATACCTCCGTTTTTAT
TTTCGTGGCTGTTTTCACGTTTTATATTTACAGTGCAATAGTTAATTTAT
ATGTACCTGCTTGTAGTTTTGATTCGCTGTTAACTCGACGTACTCCCCCT
CCCCAATTTTTTTTGAATGTATTTTTACTGGTGGGTGTATATACACGTTA
AAATTCAAGTCAAATAGTTTCGTGACCTCAACATGAGAGCTATAATGCAA
CCAACTAGGGCAGGGTTAACTCACGAATGAGAATTTCGGTTGATGAAATC
CCCGAACTCCCTCTCCTCGCCTCCCGCCTCCCGCGCTTCCGCGTCGCGTC
AACGGCTGAAACTGTAGGGATAATCAAGGGTATAATTTGTTCGATGTGCG
AGACGATAACAGCATATTCGTGAGCTTGGCTTCTTACAGGGACGAAAACT
GCCCCGCGACGCTTGTGGAGATGTTCTCCAAGGCAGATCGCCCGGACTAT
CTGTTCGTTGGATTGGTTCAACAGGTGCGGGTTCGTCCGTCCGTCCGTCC
GTCCGTCCGTTCGTTCGTTTTTGACACAGACGACGATGACTGTGACGACA
ACGGCAGGTAAAATGATCTGTTTTTAACGCGAGCATAGGCGGGAAACCTA
CCTACCCCACCCACCCACCCACCTACAGATAGAGATGTGACGTACATCAG
TTGGTTTAATTAGAACGTTCACATGCTTCTGGTCGTAGGTCATTTAAATA
CTTGGTAGTATGCATGTTATAATGGGCTACGGCAGATAGCATATTACATT
TTTTTGAACCGGATGGAGTGTCGAAAACGAAGAGAGAAATCTGGCAGTAA
ATGAGTATCAAACGCTGCTGTCGTGGTGAGTAAAGCCATGCCAATAACGA
TTTTGTGTGTATGTACTTTCTTGTCTATAAAGCGGTTGCTCCCTATGCCC
GTTATGATGTTCTACGCTATTGAGATCCCATGTCTCTCTTTGGGCTGAGG
ACTAGACGGGGGTATTAGACGAGGTCCACGGATAGAAGGGGATCGTTCGA
GTGAAGACTTGGTATTCCTCTTTACTATTATAGGGTTAAAAAAAAAAAAA
AATGGCGATTCAGATTATTTGGATGTGAACACAACTTGAACTACTCGAGC
ATACATGTACCGCAGAATTTGAATAAAACGGCCGTGTGAAGTGAGTCTAG
ATGCGAGTGCAGGCGAGCTACGGGGAGCGCAGTGAGTCCATGTGGGTGGG
TTCGAGGCACGGCACCATCGTCGACGGAGTCGCTGCCATTGGCGTAGCCG
TGGCCCTTCTCTTACAGTGATTGAATGAATGTGATATACGGACATGCTTG
AGGGGTACGCCAAAACGTATTGAGAAATTAGAACCACACACACAGCCTCT
GATAAAGACTTTTCGATTTCTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig16967:1805..4077-

>mRNA_H-paniculata_contig16967.3902.1 ID=mRNA_H-paniculata_contig16967.3902.1|Name=mRNA_H-paniculata_contig16967.3902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig16967:1805..4077- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTACAAGGAGGCGGCGGATAAGTGGCTTTTGCCAATGGATAGATG
CTCTACAAGGAGGCGGCGGATAAGTGGCTTTTGCCAATGGATAGGGATAA
TCAAGGGTATAATTTGTTCGATGTGCGAGACGATAACAGCATATTCGTGA
GCTTGGCTTCTTACAGGGACGAAAACTGCCCCGCGACGCTTGTGGAGATG
TTCTCCAAGGCAGATCGCCCGGACTATCTGTTCGTTGGATTGGTTCAACA
GGTGCGGGTTCGTCCGTCCGTCCGTCCGTCCGTCCGTTCGTTCGTTTTTG
ACACAGACGACGATGACTGTGACGACAACGGCAGGTAAGGATAATCAAGG
GTATAATTTGTTCGATGTGCGAGACGATAACAGCATATTCGTGAGCTTGG
CTTCTTACAGGGACGAAAACTGCCCCGCGACGCTTGTGGAGATGTTCTCC
AAGGCAGATCGCCCGGACTATCTGTTCGTTGGATTGGTTCAACAGGTGCG
GGTTCGTCCGTCCGTCCGTCCGTCCGTCCGTTCGTTCGTTTTTGACACAG
ACGACGATGACTGTGACGACAACGGCAGGTAA
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