mRNA_H-paniculata_contig169.3864.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig169.3864.1
Unique NamemRNA_H-paniculata_contig169.3864.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: H3GJA9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJA9_PHYRM)

HSP 1 Score: 80.1 bits (196), Expect = 2.040e-14
Identity = 51/173 (29.48%), Postives = 82/173 (47.40%), Query Frame = 1
Query:    1 SHAEPYAYCRIVNGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITRNREMRELKWGG-------------------------GALTWLTTMTRHDIANSVRTVEKFSEKLGVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHA 444
            S A+P  Y R  + +  I++ YVDDL+I S+ K  +      LK  + +++LGE+   +G  I RNR+ + +                             GAL +L T TR DIA +V  V KF E     H  A ++IL+Y+    + G+ + G  +   E++ +AD+N A
Sbjct:  960 SAADPCVYVRRSDSKFSIIIVYVDDLMIFSRTKAEIGEIKKPLKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRANSKLVKPSEDEDFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCEWYNKSHWVAAKRILKYLKTTQDLGLVFNGGTK--GELIGYADANWA 1130          
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: A0A6A3BRJ6_HIBSY (Nudix hydrolase 14 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BRJ6_HIBSY)

HSP 1 Score: 68.9 bits (167), Expect = 1.540e-10
Identity = 47/169 (27.81%), Postives = 91/169 (53.85%), Query Frame = 1
Query:   22 YCRIVNGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITRNRE-------------MRELKWGGGALTWLTTMTRHDI---ANSVRTVEKFSEKL-GVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHATCPGAMWSVSG 477
            + R V  +L I++ YVDDLLI      ++      L S+++++DLGE+  ++G  + R+++             ++++K  GGA   LT + +++I    +  +++++  E + G  H +A  +I++YV + P +GI           +VA+ DS+ ATCP +  SV+G
Sbjct:  566 FTRRVASKLVIVLVYVDDLLITGSDNVMIKELKCTLNSKFKMKDLGELKYFLGLEVLRSKKRIVLNQRKYALELIKDIK-AGGARPALTPLEQNNIFLAGSDTKSLKQNEEDMPGKMHMQASLRIVRYVKKNPGQGILLDSSSACG--LVAYCDSDWATCPMSRKSVTG 731          
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: A0A438E8J0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E8J0_VITVI)

HSP 1 Score: 66.6 bits (161), Expect = 8.450e-10
Identity = 43/159 (27.04%), Postives = 80/159 (50.31%), Query Frame = 1
Query:   22 YCRIVNGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITRNRE----------------MRELKWGG--GALTWLTTMTRHDIANSVRTVEKFSEKLGVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHA 444
            Y +I   ++ I+V YVDD+L+AS    ++      L   + ++DLGE S  +G  I R+R+                M ++ +    G++ +    TR DIA  V  + ++    G+ H KAV+K+L+Y+    +  +TY  +     E++ ++DS++A
Sbjct:  241 YLKISGSKICIIVLYVDDMLLASNNMGMILETKQFLSKNFDMKDLGEASYVIGIEIHRDRDIFCELQCPKNDLEKKQMDKIPYASAVGSIMYAQVCTRPDIAYVVGMLGRYQSNPGIDHWKAVKKVLRYLQGTKDYMLTY--RRTDNLEIIGYSDSDYA 397          
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: A0A6L2JRP5_TANCI (Putative polyprotein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2JRP5_TANCI)

HSP 1 Score: 66.2 bits (160), Expect = 1.290e-9
Identity = 42/158 (26.58%), Postives = 80/158 (50.63%), Query Frame = 1
Query:   37 NGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITRNRE--------------------MRELKWGG--GALTWLTTMTRHDIANSVRTVEKFSEKLGVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHA 444
            +G L  L+ YVDD+L+A+KG E +++    L + + ++DLG     +G  I ++R+                    M  + +    G+L +    TR DIA+++  V ++    G +H  AV++I +Y+    + G+ YGG+   E  +V ++ S++A
Sbjct:  638 SGSLIYLLLYVDDMLVAAKGMEEVNKLKILLNTEFDMKDLGAARKILGMEIIQDRKHANFRLSTTCAPQTEAKIEYMSRIPYASTVGSLMYAMVYTRPDIAHAMSVVSRYMAHPGKEHWNAVKRIFRYLKGTSDGGLIYGGE--REYLVVGYSYSDYA 793          
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: A0A2P4X8N7_9STRA (Mitochondrial protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X8N7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.310e-9
Identity = 48/159 (30.19%), Postives = 82/159 (51.57%), Query Frame = 1
Query:    7 AEPYAYCRIVNGELEILVA-YVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITRNREMRELKWGGGALTW-LTTMTRHDIANSVRTVEKFSEKLGVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHATCPGAMWSVSG 477
            A+P  Y R   G+ E +V  YVDD+LIAS+ K+++      +  ++R++DLG     +G  I  + E + L     A T  +   TR  IA +V  + ++ E    +H  A  K+++Y+ +  +  ITY G+     E+ A++D++ A       SVSG
Sbjct:   63 ADPCVYTR-GEGDSECIVCLYVDDMLIASREKDIIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERKALTISQRAYTESIINRTRPGIAFAVAKLSRYLENPDHRHWDAGIKVVRYLTKTKDAAITYNGRMG--TELTAYSDADWAGNRDNRRSVSG 218          
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: A0A250XAJ6_9CHLO (Integrase catalytic domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XAJ6_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 2.400e-9
Identity = 51/196 (26.02%), Postives = 89/196 (45.41%), Query Frame = 1
Query:    1 SHAEPYAYCRIVNGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITR---------NREMREL-----------------------KWGG---------------GALTWLTTMTRHDIANSVRTVEKFSEKLGVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHAT 447
            S A+P  Y + VNG+LEI++ +VDDLLIA+     +     +LK    ++D+G  S Y+G  I+R         ++  REL                       +  G               GAL +L T TR D+A +V  + +F +     H   +  +++Y+      GI +GG+ +H   +V F+D+++++
Sbjct:  632 SEADPAVYFQFVNGQLEIILTHVDDLLIAASDLNRVHWVKEQLKGLVDIKDMGPASYYLGMEISRKDGKILLTQHKYTRELLEKFSPMGLRGRDSPLEDKTQISRTAGVKLNEEKASQYRETVGALMYLQTSTRPDLAYAVGLLARFFQSPTELHMDLLTSVMRYLQTTQHFGIEFGGE-KHTG-LVGFSDNSYSS 825          
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: A0A1Y1ISS2_KLENI (Integrase catalytic domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ISS2_KLENI)

HSP 1 Score: 65.1 bits (157), Expect = 3.270e-9
Identity = 42/153 (27.45%), Postives = 80/153 (52.29%), Query Frame = 1
Query:    1 SHAEPYAYCRIVNGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITRNREMRELKWGGGALTWLTTMTRHDIA-----NSVRTVEKFSEKLGVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHA 444
            S A+   +  +V+GE   L+ +VDD+LIA++GK+ + +    L   + ++DLGE + ++G  + R+RE R LK      T    + RH +A     ++V  + +++      H  A   +++Y+    E G+T+GG  +    +  F D++ A
Sbjct:  703 SVADAALFLGVVDGEEVFLLVWVDDILIATRGKDRVAKVKAHLARTFDVRDLGEATYFLGMELARDREARTLKLTQKKQTG-KLLGRHWLAGARARSAVGALARYTSAPTEAHWAAALGVVRYLAGTAEAGVTFGGSGEL---LEVFCDADFA 851          
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: A0A250XPJ1_9CHLO (Integrase catalytic domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XPJ1_9CHLO)

HSP 1 Score: 64.7 bits (156), Expect = 4.330e-9
Identity = 49/196 (25.00%), Postives = 88/196 (44.90%), Query Frame = 1
Query:    1 SHAEPYAYCRIVNGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITR---------NREMREL-----------------------KWGG---------------GALTWLTTMTRHDIANSVRTVEKFSEKLGVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHAT 447
            S A+P  Y + +NG+LEI++ +VDDLLIA+     +     ++K    ++D+G  S Y+G  I+R         ++  REL                       +  G               GAL +L T TR D+A +V  + +F +     H   +  +++Y+      G+ +GG+ Q    +V F+DS++++
Sbjct:  464 SEADPAVYFQFMNGQLEIILTHVDDLLIAAADLNRVQWIKEQVKGLVDIKDMGPASYYLGMEISRKDGKILLTQHKYTRELLEKFSPMGLRGRDSPLEDKTQISRTAGVKLTEEKASKYRETVGALMYLQTGTRPDLAYAVGLLARFFQSPTELHMDLLTSVMRYLQTTQHFGLEFGGEKQ--KGLVGFSDSSYSS 657          
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: I2FUT6_USTH4 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ustilago hordei (strain Uh4875-4) TaxID=1128400 RepID=I2FUT6_USTH4)

HSP 1 Score: 63.9 bits (154), Expect = 5.780e-9
Identity = 42/162 (25.93%), Postives = 79/162 (48.77%), Query Frame = 1
Query:   13 PYAYCRIVNGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITRNREMREL-----------------KWGGGALTWLTTMTRHDIANSVRTVEKFSEKLGVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHAT 447
            P  Y R  + +  I++ YV+D LI +   E       E+  R+++++ G+VS ++G  I+RNRE R +                 K     L WL+  T  DI+ +VR +  +  +   +H    +K+LQY+    +  + YG   Q ++ ++A +++N A+
Sbjct:   39 PCIYTRGKDDDFAIVIIYVNDTLIITPKLETAKCIKEEIGRRWKMEEGGDVSHFLGIKISRNREARTMSLEQTSYVKQLLNEHLDKCWRNKLLWLSNGTCPDISQAVRVLAWYMTQPLKEHYNTAQKVLQYLDHTQDIHLQYGSDKQ-QDFLMAHSNTNWAS 199          
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Match: A0A699VFY7_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699VFY7_TANCI)

HSP 1 Score: 60.1 bits (144), Expect = 1.860e-8
Identity = 39/139 (28.06%), Postives = 68/139 (48.92%), Query Frame = 1
Query:   28 RIVNGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQDLGEVSCYMGYHITRNREMRELKWGGGALTWLTTMTRHDIANSVRTVEKFSEKLGVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHA 444
            R  + +  IL+ YVDD+LI  K    +     +L   + ++DLG     +G     +R +       G+L ++   TR D+A++V  V +F    G +H KAV+ I +Y     + GI +G +   +  +V + DS+ A
Sbjct:    6 RFSDDDFNILLLYVDDMLIVGKNIGRIAHLKRDLSKSFAIKDLGPAKQILGIQNFYDRAV-------GSLMYVMVCTRPDLAHAVGVVSRFLSNPGKKHWKAVKWIFRYQRGTSKLGIAFGNR---KPTLVGYTDSDLA 134          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig169.3864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3GJA9_PHYRM2.040e-1429.48Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A3BRJ6_HIBSY1.540e-1027.81Nudix hydrolase 14 n=1 Tax=Hibiscus syriacus TaxID... [more]
A0A438E8J0_VITVI8.450e-1027.04Retrovirus-related Pol polyprotein from transposon... [more]
A0A6L2JRP5_TANCI1.290e-926.58Putative polyprotein n=1 Tax=Tanacetum cinerariifo... [more]
A0A2P4X8N7_9STRA1.310e-930.19Mitochondrial protein (Fragment) n=1 Tax=Phytophth... [more]
A0A250XAJ6_9CHLO2.400e-926.02Integrase catalytic domain-containing protein n=1 ... [more]
A0A1Y1ISS2_KLENI3.270e-927.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A250XPJ1_9CHLO4.330e-925.00Integrase catalytic domain-containing protein n=1 ... [more]
I2FUT6_USTH45.780e-925.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A699VFY7_TANCI1.860e-828.06Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig169contigH-paniculata_contig169:30431..31067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog164328.Phyra71619
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHW0@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size495
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929337.9929008-CDS-H-paniculata_contig169:30430..306491622929337.9929008-CDS-H-paniculata_contig169:30430..30649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig169 30431..30649 +
1691480820.941945-CDS-H-paniculata_contig169:30430..306491691480820.941945-CDS-H-paniculata_contig169:30430..30649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig169 30431..30649 +
1622929338.0179162-CDS-H-paniculata_contig169:30791..310671622929338.0179162-CDS-H-paniculata_contig169:30791..31067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig169 30792..31067 +
1691480820.9511435-CDS-H-paniculata_contig169:30791..310671691480820.9511435-CDS-H-paniculata_contig169:30791..31067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig169 30792..31067 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig169.3864.1prot_H-paniculata_contig169.3864.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig169 30431..31067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig169.3864.1

>prot_H-paniculata_contig169.3864.1 ID=prot_H-paniculata_contig169.3864.1|Name=mRNA_H-paniculata_contig169.3864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=165bp
SHAEPYAYCRIVNGELEILVAYVDDLLIASKGKEVMDRCVTELKSRYRLQ
DLGEVSCYMGYHITRNREMRELKWGGGALTWLTTMTRHDIANSVRTVEKF
SEKLGVQHKKAVEKILQYVLRAPEKGITYGGQPQHENEMVAFADSNHATC
PGAMWSVSGAADTLG
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mRNA from alignment at H-paniculata_contig169:30431..31067+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig169.3864.1 ID=mRNA_H-paniculata_contig169.3864.1|Name=mRNA_H-paniculata_contig169.3864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=637bp|location=Sequence derived from alignment at H-paniculata_contig169:30431..31067+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACACGCTGAACCCTACGCGTACTGCCGGATCGTGAACGGAGAGTTAGA GATACTAGTGGCGTACGTGGATGACCTTCTGATTGCCAGCAAAGGAAAGG AGGTCATGGATCGGTGTGTGACAGAGCTGAAATCGAGGTACAGGCTTCAG GATCTGGGGGAGGTGTCCTGTTACATGGGTTACCACATCACACGCAACAG GGAGATGCGGGAGCTGAAGGTCGACCAGCTACTTCTAGGTGCAGTCGATA GTCGAGCGATTCGGGATCGTCAATCCAGCATGATACCGGTGTTGAAGGAG GATGAACCGAGATCCTCGAAGAAGGAGACGGAGATGCAGGGTTTCCGCTA CAGAGAGGCAGTGGGGGGGCGGAGCGCTCACGTGGCTCACGACGATGACG CGGCATGATATCGCGAACTCCGTCCGCACAGTGGAGAAGTTCTCTGAGAA GCTCGGCGTACAGCACAAAAAAGCGGTTGAGAAGATTCTGCAGTACGTGC TCCGAGCGCCGGAGAAGGGAATCACCTACGGCGGACAGCCGCAGCACGAG AACGAGATGGTGGCATTCGCTGACTCGAACCACGCTACCTGCCCGGGCGC CATGTGGTCGGTATCCGGGGCGGCAGATACGTTGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig169:30431..31067+

>mRNA_H-paniculata_contig169.3864.1 ID=mRNA_H-paniculata_contig169.3864.1|Name=mRNA_H-paniculata_contig169.3864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at H-paniculata_contig169:30431..31067+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACACGCTGAACCCTACGCGTACTGCCGGATCGTGAACGGAGAGTTAGA
GATACTAGTGGCGTACGTGGATGACCTTCTGATTGCCAGCAAAGGAAAGG
AGGTCATGGATCGGTGTGTGACAGAGCTGAAATCGAGGTACAGGCTTCAG
GATCTGGGGGAGGTGTCCTGTTACATGGGTTACCACATCACACGCAACAG
GGAGATGCGGGAGCTGAAGTCACACGCTGAACCCTACGCGTACTGCCGGA
TCGTGAACGGAGAGTTAGAGATACTAGTGGCGTACGTGGATGACCTTCTG
ATTGCCAGCAAAGGAAAGGAGGTCATGGATCGGTGTGTGACAGAGCTGAA
ATCGAGGTACAGGCTTCAGGATCTGGGGGAGGTGTCCTGTTACATGGGTT
ACCACATCACACGCAACAGGGAGATGCGGGAGCTGAAGTGGGGGGGCGGA
GCGCTCACGTGGCTCACGACGATGACGCGGCATGATATCGCGAACTCCGT
CCGCACAGTGGAGAAGTTCTCTGAGAAGCTCGGCGTACAGCACAAAAAAG
CGGTTGAGAAGATTCTGCAGTACGTGCTCCGAGCGCCGGAGAAGGGAATC
ACCTACGGCGGACAGCCGCAGCACGAGAACGAGATGGTGGCATTCGCTGA
CTCGAACCACGCTACCTGCCCGGGCGCCATGTGGTCGGTATCCGGGGCGG
CAGATACGTTGGGGTGGGGGGGCGGAGCGCTCACGTGGCTCACGACGATG
ACGCGGCATGATATCGCGAACTCCGTCCGCACAGTGGAGAAGTTCTCTGA
GAAGCTCGGCGTACAGCACAAAAAAGCGGTTGAGAAGATTCTGCAGTACG
TGCTCCGAGCGCCGGAGAAGGGAATCACCTACGGCGGACAGCCGCAGCAC
GAGAACGAGATGGTGGCATTCGCTGACTCGAACCACGCTACCTGCCCGGG
CGCCATGTGGTCGGTATCCGGGGCGGCAGATACGTTGGGG
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