mRNA_H-paniculata_contig1689.3856.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1689.3856.1
Unique NamemRNA_H-paniculata_contig1689.3856.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1689.3856.1 vs. uniprot
Match: A0A5B7BAX9_DAVIN (Putative lectin receptor kinase (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BAX9_DAVIN)

HSP 1 Score: 148 bits (373), Expect = 3.910e-40
Identity = 63/145 (43.45%), Postives = 94/145 (64.83%), Query Frame = 1
Query:    1 LRSDQGEEFTGKAFRQFCAENGVKQEFSAAYTPPKNGVAERSWRSVFEMTRSKMITANMGRRCWAQAVRAAVYCIKRAPTRPHDRGTPYEKWQGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWMGVFLGYDEESPSYRIYNP 435
            LRSD+G E+T  AF+++C E G++ +F+ AYTP +NG+AER  R++  MTR+ +    + ++ WA+AV  + Y   R PT+     TP E W G  P + HLR+FGC AY      +R+KLDD+    +F+GY EES +Y++YNP
Sbjct:    6 LRSDRGGEYTSNAFQEYCREQGIRHQFTTAYTPQQNGIAERKNRTILNMTRTMLKEKGLSKQFWAEAVACSTYLPNRYPTKSVKHMTPQEAWSGYKPNVAHLRIFGCVAYAQVPEAKRKKLDDRGEKCIFIGYSEESKAYKLYNP 150          
BLAST of mRNA_H-paniculata_contig1689.3856.1 vs. uniprot
Match: A0A6A3C4D2_HIBSY (FAD-binding Berberine family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C4D2_HIBSY)

HSP 1 Score: 151 bits (382), Expect = 1.000e-39
Identity = 69/145 (47.59%), Postives = 94/145 (64.83%), Query Frame = 1
Query:    1 LRSDQGEEFTGKAFRQFCAENGVKQEFSAAYTPPKNGVAERSWRSVFEMTRSKMITANMGRRCWAQAVRAAVYCIKRAPTRPHDRGTPYEKWQGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWMGVFLGYDEESPSYRIYNP 435
            LRSD+G E+T K F +FC E+G+  + +A YTP +NGVAER  R++ +M RS +    + R  WA+AVR AVY + R PT+     TP E W G  P + HL++FGC AY     Q R+KLDD+    +F+GYDE S +YR+YNP
Sbjct:  409 LRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNP 553          
BLAST of mRNA_H-paniculata_contig1689.3856.1 vs. uniprot
Match: A0A6A3ACL1_HIBSY (Putative cyclic nucleotide-gated ion channel 8 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ACL1_HIBSY)

HSP 1 Score: 151 bits (382), Expect = 1.010e-39
Identity = 69/145 (47.59%), Postives = 94/145 (64.83%), Query Frame = 1
Query:    1 LRSDQGEEFTGKAFRQFCAENGVKQEFSAAYTPPKNGVAERSWRSVFEMTRSKMITANMGRRCWAQAVRAAVYCIKRAPTRPHDRGTPYEKWQGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWMGVFLGYDEESPSYRIYNP 435
            LRSD+G E+T K F +FC E+G+  + +A YTP +NGVAER  R++ +M RS +    + R  WA+AVR AVY + R PT+     TP E W G  P + HL++FGC AY     Q R+KLDD+    +F+GYDE S +YR+YNP
Sbjct:  351 LRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNP 495          
BLAST of mRNA_H-paniculata_contig1689.3856.1 vs. uniprot
Match: A0A2K3KQ52_TRIPR (Cysteine-rich receptor-like protein kinase 25-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KQ52_TRIPR)

HSP 1 Score: 142 bits (357), Expect = 1.150e-39
Identity = 63/145 (43.45%), Postives = 93/145 (64.14%), Query Frame = 1
Query:    1 LRSDQGEEFTGKAFRQFCAENGVKQEFSAAYTPPKNGVAERSWRSVFEMTRSKMITANMGRRCWAQAVRAAVYCIKRAPTRPHDRGTPYEKWQGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWMGVFLGYDEESPSYRIYNP 435
            LR+D+G EF    F++FC ENG+K++ +AAYTP +NG+AER  R++ +M RS + + ++ +  W +AV  A+Y + R+P       TP E W    P + H +VFGC AY      QR+KLDDK+   +FLG  EES +YR+Y+P
Sbjct:   13 LRTDRGGEFNSNEFKEFCEENGIKRQLTAAYTPQQNGIAERKNRTIMDMVRSMLASKSIPKEFWPEAVNWAIYVLNRSPAAAIPDKTPEEAWSFNKPTVKHFKVFGCIAYTHVPDAQRKKLDDKSIKCIFLGISEESKAYRLYHP 157          
BLAST of mRNA_H-paniculata_contig1689.3856.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY)

HSP 1 Score: 150 bits (378), Expect = 3.510e-39
Identity = 68/145 (46.90%), Postives = 93/145 (64.14%), Query Frame = 1
Query:    1 LRSDQGEEFTGKAFRQFCAENGVKQEFSAAYTPPKNGVAERSWRSVFEMTRSKMITANMGRRCWAQAVRAAVYCIKRAPTRPHDRGTPYEKWQGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWMGVFLGYDEESPSYRIYNP 435
            LRSD+G E+T K F +FC E+G+  + +  YTP +NGVAER  R++ +M RS +    + R  WA+AVR AVY + R PT+     TP E W G  P + HL++FGC AY     Q R+KLDD+    +F+GYDE S +YR+YNP
Sbjct: 1377 LRSDRGGEYTSKLFEEFCKEHGIIHQLTGRYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNP 1521          
BLAST of mRNA_H-paniculata_contig1689.3856.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 148 bits (373), Expect = 1.610e-38
Identity = 67/145 (46.21%), Postives = 92/145 (63.45%), Query Frame = 1
Query:    1 LRSDQGEEFTGKAFRQFCAENGVKQEFSAAYTPPKNGVAERSWRSVFEMTRSKMITANMGRRCWAQAVRAAVYCIKRAPTRPHDRGTPYEKWQGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWMGVFLGYDEESPSYRIYNP 435
            LRSD+G E+T K F +FC E+G+  + +A YTP +NGVAER  R++ +M RS +    + R  WA+AVR AVY + R PT+     TP E W G  P + H ++FGC AY       R+KLDD+    +F+GYDE S +YR+YNP
Sbjct:  456 LRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNP 600          
BLAST of mRNA_H-paniculata_contig1689.3856.1 vs. uniprot
Match: A0A4Y2LAF7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LAF7_ARAVE)

HSP 1 Score: 141 bits (356), Expect = 5.080e-38
Identity = 68/143 (47.55%), Postives = 87/143 (60.84%), Query Frame = 1
Query:    1 LRSDQGEEFTGKAFRQFCAENGVKQEFSAAYTPPKNGVAERSWRSVFEMTRSKMITANMGRRCWAQAVRAAVYCIKRAPTRPHDRGTPYEKWQGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWMGVFLGYDEESPSYRIY 429
            LR+D G ++ GK    F  E G+  + +  Y+P +NGV+ER  R++ EM R  +  AN+ +R WA+A   A Y   R PT+P  R TPY  W    P L H+RVFGC AY   Q Q+RRKLDDKA  G+FLGYD  S  YRIY
Sbjct:   73 LRNDNGGKYIGKEIEDFLKEQGIVHQLTVPYSPQQNGVSERKNRTLIEMARCLLSDANLSQRFWAEAAMTATYLQNRLPTKPK-RKTPYVLWANRKPDLSHIRVFGCKAYACIQKQKRRKLDDKAVEGIFLGYDYRSKGYRIY 214          
BLAST of mRNA_H-paniculata_contig1689.3856.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS)

HSP 1 Score: 144 bits (364), Expect = 2.640e-37
Identity = 65/145 (44.83%), Postives = 98/145 (67.59%), Query Frame = 1
Query:    1 LRSDQGEEFTGKAFRQFCAENGVKQEFSAAYTPPKNGVAERSWRSVFEMTRSKMITANMGRRCWAQAVRAAVYCIKRAPTRPHDRGTPYEKWQGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWMGVFLGYDEESPSYRIYNP 435
            LRSD+G E+   AF+ +C ENG+K++ +AAYTP +NG+AER  RS+  M R  M+  ++ RR W +AV+ AV+ + R+P+      TP E+W    P ++H+RVFGC AY +   ++R KLD+K+   VF+G  +ES +YR+YNP
Sbjct:  565 LRSDRGGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAYALVPYERRVKLDEKSIQCVFVGVSKESKAYRLYNP 709          
BLAST of mRNA_H-paniculata_contig1689.3856.1 vs. uniprot
Match: A0A6D2I006_9BRAS (Integrase catalytic domain-containing protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2I006_9BRAS)

HSP 1 Score: 144 bits (362), Expect = 4.320e-37
Identity = 66/145 (45.52%), Postives = 99/145 (68.28%), Query Frame = 1
Query:    1 LRSDQGEEFTGKAFRQFCAENGVKQEFSAAYTPPKNGVAERSWRSVFEMTRSKMITANMGRRCWAQAVRAAVYCIKRAPTRPHDRGTPYEKWQGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWMGVFLGYDEESPSYRIYNP 435
            LR+D+G E+  KAF +FC ENG+K++ +AAYTP +NGVAER  RSV  MTR  ++  ++ RR WA+AV+ AV+ + R+P+      TP EKW    P +++L++FGC A+ +   ++R KLD+K+   V  G  +ES +YR+YNP
Sbjct:   92 LRTDRGGEYCSKAFEEFCRENGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLLEMSVPRRFWAEAVQYAVHILNRSPSAALGDITPEEKWSQHKPSVEYLKIFGCVAFALVPYERRIKLDEKSVKCVLFGLSKESKAYRLYNP 236          
BLAST of mRNA_H-paniculata_contig1689.3856.1 vs. uniprot
Match: A0A151R9Z3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R9Z3_CAJCA)

HSP 1 Score: 138 bits (347), Expect = 2.220e-36
Identity = 64/145 (44.14%), Postives = 94/145 (64.83%), Query Frame = 1
Query:    1 LRSDQGEEFTGKAFRQFCAENGVKQEFSAAYTPPKNGVAERSWRSVFEMTRSKMITANMGRRCWAQAVRAAVYCIKRAPTRPHDRGTPYEKWQGTTPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWMGVFLGYDEESPSYRIYNP 435
            +RSD+G EFT   F ++C E+G+K+  +A Y+P +NGVAER  R++ +M RS +   NM ++ WA+AV+ AVY   R P       TP E W G  P + HLRVFG  AY     QQR KL+D++   +F+GYDE+S +Y++++P
Sbjct:  155 VRSDRGGEFTSVEFNKYCEEHGIKRFLTAPYSPQQNGVAERKNRTILDMVRSMLKGKNMPKKFWAEAVQCAVYVQNRCPHAKLGEKTPQEIWSGMKPSVSHLRVFGSLAYGQVPRQQRTKLEDRSKKYIFIGYDEKSKAYKLFDP 299          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1689.3856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5B7BAX9_DAVIN3.910e-4043.45Putative lectin receptor kinase (Fragment) n=1 Tax... [more]
A0A6A3C4D2_HIBSY1.000e-3947.59FAD-binding Berberine family protein n=1 Tax=Hibis... [more]
A0A6A3ACL1_HIBSY1.010e-3947.59Putative cyclic nucleotide-gated ion channel 8 n=1... [more]
A0A2K3KQ52_TRIPR1.150e-3943.45Cysteine-rich receptor-like protein kinase 25-like... [more]
A0A6A2WXP0_HIBSY3.510e-3946.90Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=10... [more]
A0A6A2WSU7_HIBSY1.610e-3846.21Integrase catalytic domain-containing protein n=2 ... [more]
A0A4Y2LAF7_ARAVE5.080e-3847.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2IM54_9BRAS2.640e-3744.83Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A6D2I006_9BRAS4.320e-3745.52Integrase catalytic domain-containing protein n=2 ... [more]
A0A151R9Z3_CAJCA2.220e-3644.14Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1689contigH-paniculata_contig1689:20553..20987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score141.7
Seed ortholog evalue2.6e-31
Seed eggNOG ortholog15368.BRADI1G43550.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929336.8247871-CDS-H-paniculata_contig1689:20552..209871622929336.8247871-CDS-H-paniculata_contig1689:20552..20987Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1689 20553..20987 -
1691480820.3852632-CDS-H-paniculata_contig1689:20552..209871691480820.3852632-CDS-H-paniculata_contig1689:20552..20987Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1689 20553..20987 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1689.3856.1prot_H-paniculata_contig1689.3856.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1689 20553..20987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1689.3856.1

>prot_H-paniculata_contig1689.3856.1 ID=prot_H-paniculata_contig1689.3856.1|Name=mRNA_H-paniculata_contig1689.3856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
LRSDQGEEFTGKAFRQFCAENGVKQEFSAAYTPPKNGVAERSWRSVFEMT
RSKMITANMGRRCWAQAVRAAVYCIKRAPTRPHDRGTPYEKWQGTTPKLD
HLRVFGCTAYVMFQSQQRRKLDDKAWMGVFLGYDEESPSYRIYNP
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mRNA from alignment at H-paniculata_contig1689:20553..20987-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1689.3856.1 ID=mRNA_H-paniculata_contig1689.3856.1|Name=mRNA_H-paniculata_contig1689.3856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=435bp|location=Sequence derived from alignment at H-paniculata_contig1689:20553..20987- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCGGTCAGATCAAGGAGAAGAGTTTACAGGAAAGGCATTCCGACAATT TTGTGCGGAAAATGGCGTAAAGCAAGAATTTTCTGCCGCTTACACACCGC CGAAAAATGGTGTGGCGGAACGCAGCTGGCGTAGCGTTTTCGAGATGACC CGAAGTAAGATGATCACCGCCAACATGGGCCGCAGGTGTTGGGCGCAGGC GGTGCGCGCGGCTGTGTATTGCATAAAACGCGCCCCGACGCGACCGCACG ACAGAGGGACGCCGTATGAGAAATGGCAAGGCACGACACCAAAGCTTGAC CACCTTCGTGTCTTCGGCTGCACGGCGTATGTGATGTTCCAGTCCCAGCA GAGACGAAAGCTCGATGACAAAGCATGGATGGGGGTGTTTCTGGGGTACG ACGAAGAAAGCCCGAGTTATCGCATATATAACCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1689:20553..20987-

>mRNA_H-paniculata_contig1689.3856.1 ID=mRNA_H-paniculata_contig1689.3856.1|Name=mRNA_H-paniculata_contig1689.3856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig1689:20553..20987- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCGGTCAGATCAAGGAGAAGAGTTTACAGGAAAGGCATTCCGACAATT
TTGTGCGGAAAATGGCGTAAAGCAAGAATTTTCTGCCGCTTACACACCGC
CGAAAAATGGTGTGGCGGAACGCAGCTGGCGTAGCGTTTTCGAGATGACC
CGAAGTAAGATGATCACCGCCAACATGGGCCGCAGGTGTTGGGCGCAGGC
GGTGCGCGCGGCTGTGTATTGCATAAAACGCGCCCCGACGCGACCGCACG
ACAGAGGGACGCCGTATGAGAAATGGCAAGGCACGACACCAAAGCTTGAC
CACCTTCGTGTCTTCGGCTGCACGGCGTATGTGATGTTCCAGTCCCAGCA
GAGACGAAAGCTCGATGACAAAGCATGGATGGGGGTGTTTCTGGGGTACG
ACGAAGAAAGCCCGAGTTATCGCATATATAACCCGCTTCGGTCAGATCAA
GGAGAAGAGTTTACAGGAAAGGCATTCCGACAATTTTGTGCGGAAAATGG
CGTAAAGCAAGAATTTTCTGCCGCTTACACACCGCCGAAAAATGGTGTGG
CGGAACGCAGCTGGCGTAGCGTTTTCGAGATGACCCGAAGTAAGATGATC
ACCGCCAACATGGGCCGCAGGTGTTGGGCGCAGGCGGTGCGCGCGGCTGT
GTATTGCATAAAACGCGCCCCGACGCGACCGCACGACAGAGGGACGCCGT
ATGAGAAATGGCAAGGCACGACACCAAAGCTTGACCACCTTCGTGTCTTC
GGCTGCACGGCGTATGTGATGTTCCAGTCCCAGCAGAGACGAAAGCTCGA
TGACAAAGCATGGATGGGGGTGTTTCTGGGGTACGACGAAGAAAGCCCGA
GTTATCGCATATATAACCCG
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