mRNA_H-paniculata_contig16821.3828.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16821.3828.1
Unique NamemRNA_H-paniculata_contig16821.3828.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16821.3828.1 vs. uniprot
Match: A0A6H5KDU8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU8_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 7.160e-18
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:    7 TFAVGYAPTETAAT------QDKDQFWAALHATAAQVPTTEPLVIMMNANARSDWREVNCGLEMAKVLGAYRRDVLNDNGERLLHLSGSLNLALACTFFSASK 297
            TF VGYAPTETA          KD FW AL A   +V + + LV++M+ANAR+  R   C    AK++GAY RDV+N+NGERLL L+    L+L  T+F   K
Sbjct:   33 TFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCS--DAKIMGAYGRDVMNNNGERLLGLAADNRLSLINTYFRTPK 133
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BLAST of mRNA_H-paniculata_contig16821.3828.1 vs. uniprot
Match: A0A6H5JQN0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN0_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.780e-17
Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 1 
Query:    7 TFAVGYAPTETAAT------QDKDQFWAALHATAAQVPTTEPLVIMMNANARSDWREVNCGLEMAKVLGAYRRDVLNDNGERLLHLSGSLNLALACTFFSASKKGSILHVPEP 327
            TF VGYAPTETA          KD FW AL A   +V + + LV++M+ANAR+  R   C    AK++GAY RD++N+NGERLL L+    L+L  T+F   K+   +    P
Sbjct:   33 TFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKEECSIRSRAP 143
[Close]
BLAST of mRNA_H-paniculata_contig16821.3828.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.840e-17
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1 
Query:    7 TFAVGYAPTETAAT------QDKDQFWAALHATAAQVPTTEPLVIMMNANARSDWREVNCGLEMAKVLGAYRRDVLNDNGERLLHLSGSLNLALACTFFSASKKGSILH 315
            TF VGYAPTET  T        KD FW AL A   +V + + LV++M+ANAR+  R V C     K++GAY RD++ +NGERLL L+    L+L  T+F  + KG + H
Sbjct:   93 TFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRVGCC--DGKMMGAYGRDIMTNNGERLLGLASDSQLSLTNTYFR-TPKGGVQH 198
[Close]
BLAST of mRNA_H-paniculata_contig16821.3828.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 5.160e-17
Identity = 50/109 (45.87%), Postives = 68/109 (62.39%), Query Frame = 1 
Query:    7 TFAVGYAPTETAATQD------KDQFWAALHATAAQVPTTEPLVIMMNANARSDWREVNCGLEMAKVLGAYRRDVLNDNGERLLHLSGSLNLALACTFFSASKKGSILH 315
            TF VGYAPTET  T +      KD FW AL A   +V + + LV++M+ANAR+  R   C    AK++GAY RD++N+NGERLL L+    L+L  T+F  + KG + H
Sbjct:  290 TFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFR-TPKGGVQH 395
[Close]
BLAST of mRNA_H-paniculata_contig16821.3828.1 vs. uniprot
Match: A0A6H5KWS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS9_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 7.950e-17
Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 1 
Query:    7 TFAVGYAPTETAAT------QDKDQFWAALHATAAQVPTTEPLVIMMNANARSDWREVNCGLEMAKVLGAYRRDVLNDNGERLLHLSGSLNLALACTFFSASKKGSILH 315
            TF VGYAPTET  T        KD FW AL A   +V + + LV++M+ANAR+  R   C    AK++GAY RD++N+NGERLL L+    L+L  T+F  + KG + H
Sbjct:   14 TFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFR-TPKGGVQH 119
[Close]
BLAST of mRNA_H-paniculata_contig16821.3828.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 9.260e-17
Identity = 51/109 (46.79%), Postives = 66/109 (60.55%), Query Frame = 1 
Query:    7 TFAVGYAPTETAAT------QDKDQFWAALHATAAQVPTTEPLVIMMNANARSDWREVNCGLEMAKVLGAYRRDVLNDNGERLLHLSGSLNLALACTFFSASKKGSILH 315
            TF VGYAPTET  T        KD FW AL A   +V + + LV++M+ANAR+  R   C    AKVLGAY RD++N+NGERL  L+     +LA T+F  + KG + H
Sbjct:   93 TFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRGGCC--DAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFR-TPKGGVQH 198
[Close]
BLAST of mRNA_H-paniculata_contig16821.3828.1 vs. uniprot
Match: A0A6H5JII6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII6_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.110e-16
Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 1 
Query:    7 TFAVGYAPTETAAT------QDKDQFWAALHATAAQVPTTEPLVIMMNANARSDWREVNCGLEMAKVLGAYRRDVLNDNGERLLHLSGSLNLALACTFFSASKKGSILH 315
            TF VGYAPTET  T        KD FW AL A   +V + + LV++M+ANAR+  R   C    AK++GAY RD++N+NGERLL L+    L+L  T+F  + KG + H
Sbjct:   93 TFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFR-TPKGGVQH 198
[Close]
BLAST of mRNA_H-paniculata_contig16821.3828.1 vs. uniprot
Match: A0A6H5JUT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT2_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.220e-16
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:    7 TFAVGYAPTETAAT------QDKDQFWAALHATAAQVPTTEPLVIMMNANARSDWREVNCGLEMAKVLGAYRRDVLNDNGERLLHLSGSLNLALACTFFSASKKG 303
            TF VGYAPTET  T        KD FW AL A   +V + + LV++M+ANAR+  R   C    AK++GAY RD++N+NGERLL L+    L+L  T+F   K G
Sbjct:   93 TFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVYSRDHLVVLMDANARTGRRREGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGG 195
[Close]
BLAST of mRNA_H-paniculata_contig16821.3828.1 vs. uniprot
Match: A0A6H5K358_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K358_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.320e-16
Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 1 
Query:    7 TFAVGYAPTETAAT------QDKDQFWAALHATAAQVPTTEPLVIMMNANARSDWREVNCGLEMAKVLGAYRRDVLNDNGERLLHLSGSLNLALACTFFSASKKGSILH 315
            TF VGYAPTET  T        KD FW AL A   +V + + LV++M+ANAR+  R   C    AK++GAY RD++N+NGERLL L+    L+L  T+F  + KG + H
Sbjct:  188 TFVVGYAPTETVRTTACGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFR-TPKGGVQH 293
[Close]
BLAST of mRNA_H-paniculata_contig16821.3828.1 vs. uniprot
Match: A0A6H5KF07_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF07_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.320e-16
Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 1 
Query:    7 TFAVGYAPTETAAT------QDKDQFWAALHATAAQVPTTEPLVIMMNANARSDWREVNCGLEMAKVLGAYRRDVLNDNGERLLHLSGSLNLALACTFFSASKKGSILH 315
            TF VGYAPTET  T        KD FW AL A   +V + + LV++M+ANAR+  R   C    AK++GAY RD++N+NGERLL L+    L+L  T+F  + KG + H
Sbjct:  210 TFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFR-TPKGGVQH 315
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16821.3828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDU8_9PHAE7.160e-1847.57Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQN0_9PHAE3.780e-1743.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JMM5_9PHAE4.840e-1744.95Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K3Q1_9PHAE5.160e-1745.87Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KWS9_9PHAE7.950e-1745.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBZ6_9PHAE9.260e-1746.79Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JII6_9PHAE1.110e-1645.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUT2_9PHAE1.220e-1646.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K358_9PHAE1.320e-1645.87Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KF07_9PHAE1.320e-1645.87Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16821contigH-paniculata_contig16821:72..401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929333.2678146-CDS-H-paniculata_contig16821:71..4011622929333.2678146-CDS-H-paniculata_contig16821:71..401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16821 72..401 +
1691480818.824049-CDS-H-paniculata_contig16821:71..4011691480818.824049-CDS-H-paniculata_contig16821:71..401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16821 72..401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16821.3828.1prot_H-paniculata_contig16821.3828.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16821 72..401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16821.3828.1

>prot_H-paniculata_contig16821.3828.1 ID=prot_H-paniculata_contig16821.3828.1|Name=mRNA_H-paniculata_contig16821.3828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MTTFAVGYAPTETAATQDKDQFWAALHATAAQVPTTEPLVIMMNANARSD
WREVNCGLEMAKVLGAYRRDVLNDNGERLLHLSGSLNLALACTFFSASKK
GSILHVPEP*
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mRNA from alignment at H-paniculata_contig16821:72..401+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16821.3828.1 ID=mRNA_H-paniculata_contig16821.3828.1|Name=mRNA_H-paniculata_contig16821.3828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig16821:72..401+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCACCTTTGCCGTCGGATATGCTCCTACCGAGACGGCTGCCACGCA
GGATAAGGACCAATTTTGGGCAGCGCTACATGCAACCGCTGCGCAGGTAC
CTACCACGGAGCCCCTCGTCATCATGATGAATGCGAACGCCAGGTCTGAC
TGGAGGGAAGTCAACTGTGGATTGGAAATGGCCAAAGTGCTTGGTGCCTA
CCGGCGCGATGTGCTGAATGATAACGGGGAACGCCTACTACATTTGTCCG
GTTCACTCAACCTCGCGCTCGCTTGTACTTTCTTCAGCGCCTCGAAGAAA
GGAAGTATCCTACACGTACCAGAGCCCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig16821:72..401+

>mRNA_H-paniculata_contig16821.3828.1 ID=mRNA_H-paniculata_contig16821.3828.1|Name=mRNA_H-paniculata_contig16821.3828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig16821:72..401+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCACCTTTGCCGTCGGATATGCTCCTACCGAGACGGCTGCCACGCA
GGATAAGGACCAATTTTGGGCAGCGCTACATGCAACCGCTGCGCAGGTAC
CTACCACGGAGCCCCTCGTCATCATGATGAATGCGAACGCCAGGTCTGAC
TGGAGGGAAGTCAACTGTGGATTGGAAATGGCCAAAGTGCTTGGTGCCTA
CCGGCGCGATGTGCTGAATGATAACGGGGAACGCCTACTACATTTGTCCG
GTTCACTCAACCTCGCGCTCGCTTGTACTTTCTTCAGCGCCTCGAAGAAA
GGAAGTATCCTACACGTACCAGAGCCCTAAATGACCACCTTTGCCGTCGG
ATATGCTCCTACCGAGACGGCTGCCACGCAGGATAAGGACCAATTTTGGG
CAGCGCTACATGCAACCGCTGCGCAGGTACCTACCACGGAGCCCCTCGTC
ATCATGATGAATGCGAACGCCAGGTCTGACTGGAGGGAAGTCAACTGTGG
ATTGGAAATGGCCAAAGTGCTTGGTGCCTACCGGCGCGATGTGCTGAATG
ATAACGGGGAACGCCTACTACATTTGTCCGGTTCACTCAACCTCGCGCTC
GCTTGTACTTTCTTCAGCGCCTCGAAGAAAGGAAGTATCCTACACGTACC
AGAGCCCTAA
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