mRNA_H-paniculata_contig16799.3823.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16799.3823.1
Unique NamemRNA_H-paniculata_contig16799.3823.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16799.3823.1 vs. uniprot
Match: A0A6H5KIV2_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIV2_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.530e-13
Identity = 26/44 (59.09%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 QCFCGNAGTDYIKHGKSTSCNYVCTGDSDETCGGYDAMSVYSFA 132
            QC CG + TD ++HG+ST+C+Y C GDSD+ CGG+ AMSVYS++
Sbjct:    6 QCCCGGSSTDLLQHGESTACDYDCPGDSDQVCGGFYAMSVYSYS 49
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BLAST of mRNA_H-paniculata_contig16799.3823.1 vs. uniprot
Match: A0A6H5JX48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX48_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.960e-13
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 QCFCGNAGTDYIKHGKSTSCNYVCTGDSDETCGGYDAMSVYSFAA 135
            +C+CG+AG DY  HG+ST C Y C+GD+D+TCGGYDA +VY + A
Sbjct:  516 ECWCGSAGADYAVHGESTICTYACSGDADQTCGGYDAANVYRYTA 560
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BLAST of mRNA_H-paniculata_contig16799.3823.1 vs. uniprot
Match: D7FRS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS1_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.010e-12
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 QCFCGNAGTDYIKHGKSTSCNYVCTGDSDETCGGYDAMSVYSFA 132
            +CFCG + TD ++HG+STSC+Y C GDSD+ CGG+ AMSVYS++
Sbjct:  886 ECFCGGSSTDLLQHGESTSCDYECPGDSDQVCGGFYAMSVYSYS 929
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BLAST of mRNA_H-paniculata_contig16799.3823.1 vs. uniprot
Match: D7FRS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS2_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.380e-12
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 QCFCGNAGTDYIKHGKSTSCNYVCTGDSDETCGGYDAMSVYSFA 132
            +CFCG + TD ++HG+ST+C+Y C GDSDE CGG+ AMSVYS++
Sbjct:  471 ECFCGGSSTDLLQHGESTACDYECPGDSDELCGGFYAMSVYSYS 514
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BLAST of mRNA_H-paniculata_contig16799.3823.1 vs. uniprot
Match: D7FTD7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD7_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.760e-12
Identity = 26/44 (59.09%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 QCFCGNAGTDYIKHGKSTSCNYVCTGDSDETCGGYDAMSVYSFA 132
            +CFCG + TD ++HG+S++CNY C GDSD+ CGG+ AMSVYS++
Sbjct:  348 ECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVYSYS 391
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BLAST of mRNA_H-paniculata_contig16799.3823.1 vs. uniprot
Match: D7FTD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD8_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.870e-12
Identity = 26/44 (59.09%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 QCFCGNAGTDYIKHGKSTSCNYVCTGDSDETCGGYDAMSVYSFA 132
            +CFCG + TD ++HG+S++CNY C GDSD+ CGG+ AMSVYS++
Sbjct:  424 ECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVYSYS 467
[Close]
BLAST of mRNA_H-paniculata_contig16799.3823.1 vs. uniprot
Match: D7FUE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE6_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.880e-12
Identity = 26/44 (59.09%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 QCFCGNAGTDYIKHGKSTSCNYVCTGDSDETCGGYDAMSVYSFA 132
            +CFCG + TD ++HG+S++CNY C GDSD+ CGG+ AMSVYS++
Sbjct:  775 ECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVYSYS 818
[Close]
BLAST of mRNA_H-paniculata_contig16799.3823.1 vs. uniprot
Match: D8LEK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK9_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.550e-12
Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 QCFCGNAGTDYIKHGKSTSCNYVCTGDSDETCGGYDAMSVYSF 129
            +C+CG+AG DY  HG+ST C Y C+GD+D+TCGG+DA +VY +
Sbjct:  351 ECWCGSAGADYALHGESTDCTYACSGDTDQTCGGFDAANVYRY 393
[Close]
BLAST of mRNA_H-paniculata_contig16799.3823.1 vs. uniprot
Match: D8LEL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 5.400e-12
Identity = 24/43 (55.81%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 QCFCGNAGTDYIKHGKSTSCNYVCTGDSDETCGGYDAMSVYSF 129
            +C+CG+ G DY  HG+ST C Y C+GD+D+TCGG+DA +VY +
Sbjct:   33 ECWCGSVGADYTVHGESTDCTYACSGDADQTCGGFDAANVYRY 75
[Close]
BLAST of mRNA_H-paniculata_contig16799.3823.1 vs. uniprot
Match: A0A6H5K223_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K223_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.030e-10
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 QCFCGNAGTDYIKHGKSTSCNYVCTGDSDETCGGYDAMSVY 123
            +C+CGN+G D +  G+ST CNY C+GD+DETCGG++AMSVY
Sbjct:  126 ECWCGNSGYDTL--GESTDCNYDCSGDADETCGGFNAMSVY 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16799.3823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5KIV2_9PHAE1.530e-1359.09WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JX48_9PHAE3.960e-1360.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRS1_ECTSI1.010e-1261.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRS2_ECTSI1.380e-1261.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTD7_ECTSI1.760e-1259.09WSC domain containing protein n=1 Tax=Ectocarpus s... [more]
D7FTD8_ECTSI1.870e-1259.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUE6_ECTSI1.880e-1259.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEK9_ECTSI2.550e-1258.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEL0_ECTSI5.400e-1255.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K223_9PHAE1.030e-1063.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16799contigH-paniculata_contig16799:362..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog2880.D7FRS1
KEGG koko:K22017
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Sushi, nidogen and EGF-like
EggNOG OGsKOG4157@1,KOG4157@2759,KOG4291@1,KOG4291@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929332.0754514-CDS-H-paniculata_contig16799:361..4991622929332.0754514-CDS-H-paniculata_contig16799:361..499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16799 362..499 +
1691480818.3752635-CDS-H-paniculata_contig16799:361..4991691480818.3752635-CDS-H-paniculata_contig16799:361..499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16799 362..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16799.3823.1prot_H-paniculata_contig16799.3823.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16799 362..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16799.3823.1

>prot_H-paniculata_contig16799.3823.1 ID=prot_H-paniculata_contig16799.3823.1|Name=mRNA_H-paniculata_contig16799.3823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
QCFCGNAGTDYIKHGKSTSCNYVCTGDSDETCGGYDAMSVYSFAA*
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mRNA from alignment at H-paniculata_contig16799:362..499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16799.3823.1 ID=mRNA_H-paniculata_contig16799.3823.1|Name=mRNA_H-paniculata_contig16799.3823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at H-paniculata_contig16799:362..499+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTGCTTCTGTGGTAATGCGGGCACGGACTACATAAAGCATGGCAAGTC
TACCAGTTGCAACTACGTTTGCACCGGCGACAGTGACGAAACGTGTGGCG
GCTACGACGCTATGTCAGTTTACTCGTTTGCCGCCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig16799:362..499+

>mRNA_H-paniculata_contig16799.3823.1 ID=mRNA_H-paniculata_contig16799.3823.1|Name=mRNA_H-paniculata_contig16799.3823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig16799:362..499+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTGCTTCTGTGGTAATGCGGGCACGGACTACATAAAGCATGGCAAGTC
TACCAGTTGCAACTACGTTTGCACCGGCGACAGTGACGAAACGTGTGGCG
GCTACGACGCTATGTCAGTTTACTCGTTTGCCGCCTAGCAGTGCTTCTGT
GGTAATGCGGGCACGGACTACATAAAGCATGGCAAGTCTACCAGTTGCAA
CTACGTTTGCACCGGCGACAGTGACGAAACGTGTGGCGGCTACGACGCTA
TGTCAGTTTACTCGTTTGCCGCCTAG
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