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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1627 |
| Cds size | 1416 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16793.3822.1 >prot_H-paniculata_contig16793.3822.1 ID=prot_H-paniculata_contig16793.3822.1|Name=mRNA_H-paniculata_contig16793.3822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=472bp
MSRPGSNEYTYRENWSKFVDGAIARRASRNKNSSRKGGGRRSNSKGGKMD
DDDAANFITYCETDENRVNFRDLMHLEEVLSRLQGTGDDRSRSKTAAETY
GSGEDNGGVRNRVWEQEEGHSLKSCGGGAGGGEIPGRLKSPDRKPLASLS
SFNNNNNNGDDDGDENSNICSPAPRMSKIFSSQPFLHCSSPRPISGAGRP
RMPFITSTTAEIIPDVVFKMENSSSDEVGHATTSSPIAETSWSCNGVRVL
EEDQVIAHSAITITSQGMQGFKDASLRCTDLVCMKADTVCMEGTSIQQTM
ANVVAPGEGGACPMTCKEQAKTTTDGGQSSPVWDETRIDEDSEDTINSMH
TAGTLDELVAMEKFLLADVPHAPVIAHESDTPCGGDFLGVTVLDCTNVEN
NNRAERVPLSEEEIVTTENTVNDPCSSPVSLALGDTSIAESDHQAAFPAE
ATQIELVVKCGQSQASEVGRPT back to topmRNA from alignment at H-paniculata_contig16793:2174..4596- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig16793.3822.1 ID=mRNA_H-paniculata_contig16793.3822.1|Name=mRNA_H-paniculata_contig16793.3822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2423bp|location=Sequence derived from alignment at H-paniculata_contig16793:2174..4596- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGACATACATGACGTAGGGTCAAAGCACTGGCTGTGGCTGTGAGTAGT
GGTATAAGCAATTTTTTTCACTGGATTCTTGACTGTGATTGAAAGCATTG
CCGTCACCGCTGACCACGGTCGTCTCCTTGATCGTCTGAGATCAACCGTT
GGCCTTTTCTTGTGTGTCGTGCAATAGTACAGACAATAAGTACAGTCCAA
TACAGCAGTATGAGTCGACCAGGGAGCAACGAATACACCTACCGGGAAAA
CTGGTCCAAATTTGTAGACGGCGCTATCGCTCGACGGGCCTCGCGCAACA
AGAACAGTAGCCGAAAAGGCGGCGGCAGAAGAAGTAACAGCAAGGGCGGG
AAAATGGACGATGATGATGCCGCGAATTTCATCACATACTGTGAAACGGA
CGAGAATAGAGTTAATTTCAGAGACCTGATGCATCTGGAAGAAGTGCTGT
CCCGGCTTCAAGGGACCGGTGACGATAGGAGCAGGAGTAAGACAGCTGCA
GAGACATATGGGTCGGGAGAAGATAATGGCGGCGTGAGAAACAGAGTGTG
GGAGCAAGAGGAGGGGCATAGCTTGAAGTCTTGCGGCGGAGGCGCGGGTG
GAGGCGAGATACCTGGTCGGTTGAAATCACCAGACAGGTGGGTCTTTTCC
TCGTGTAAGGCCACATCTTCGGGGCATGAGAAACTTGATTTCTGTCGTAT
AGTAAAACCAAGTAATGATTTACAACCTTAAATCAAGAATCATCGTGAGA
TCAAAACTGGTTTTCAATGCCCAAAAATCGTGCGAAAATACAAGTTTCCG
ACGTAGCTATCTATTTTTTGTTTCTCATCCGATCTTTTGGGAAAGAGAAG
GGGCGTTTGCGATAAGTAATCGCTTGGAGAAGCGGAAAGGTGGGCTAGAC
TCCTCTCAGTTAGGTGATGAGTAGCTCTCGAGCATTTGATGTCGGTAACC
GCGTCTCCCGGGACAAAAACGTCACTAAACGTTCAGAAATCAAGCTTACC
ACGAGAAAGTTTTCGAAATCCTTAAGATGCGGCCTCCCTACAGTTTTCCT
GTAGATTCTGGTGCAATGTAAAATTAAATGCGGAATGGTTGAATCGTTGT
CTCTCGCGGGCTGTAAACCCCGAGACATCGTGGGCTCGTACGGCCCACAT
AAAAATAAATAGTAAAGGCCATTTTCGAGAAACAGCCCCCTGCCATAACC
GTTGCCAATCGCTCGCGAAGCTACCGTGTATCGGTACCCGACAAACTAGA
GGAGGCAAAAAGGCTGCTGGAGTTCGATCGTTCGCCCTCTCGGTTTCGTT
TTTGCTCACGCCTGCCTGAAATGTCCTCAGAAAACCACTAGCATCATTAT
CGAGCTTCAACAACAACAATAACAACGGCGACGACGACGGCGATGAGAAT
AGCAATATCTGCAGTCCTGCCCCAAGGATGTCGAAAATATTCTCTAGTCA
ACCGTTCCTGCATTGTAGTAGCCCCCGGCCGATCTCGGGCGCTGGTCGTC
CTCGAATGCCATTTATCACGTCGACAGTGGACATGATAGACGCGGGACGG
CAGGCAGACGAGTTCGAGTTGTTGAGACAAGCCTGCGAGTTCCCCAATTC
GCGGGGGGGTCATATACCTGGCGTTATAAAGACGGCGGAGATCATCCCAG
ATGTAGTGTTCAAGATGGAAAATAGTAGTTCTGACGAGGTAGGGCATGCG
ACGACGTCGTCACCTATAGCAGAAACTAGCTGGTCTTGTAACGGCGTTAG
GGTACTGGAAGAAGACCAGGTCATTGCGCATTCGGCGATCACCATTACAA
GTCAAGGGATGCAAGGATTCAAAGATGCTTCTTTGCGTTGCACTGACTTG
GTGTGTATGAAGGCAGATACTGTTTGCATGGAGGGAACTAGTATCCAGCA
GACGATGGCAAATGTTGTTGCGCCAGGAGAAGGTGGTGCATGTCCCATGA
CTTGCAAGGAACAGGCAAAGACCACGACAGACGGCGGGCAGTCCAGTCCA
GTTTGGGACGAGACTCGAATAGACGAGGATTCGGAGGATACCATCAACAG
CATGCATACGGCGGGCACATTAGACGAGCTGGTAGCCATGGAGAAATTTC
TACTAGCAGATGTACCCCACGCTCCGGTGATAGCACACGAGAGCGACACA
CCGTGCGGGGGCGATTTTCTGGGCGTTACCGTTTTAGACTGCACTAATGT
TGAAAATAATAACCGAGCAGAACGCGTGCCCTTGAGCGAAGAGGAAATCG
TCACCACGGAGAACACAGTCAACGACCCATGCTCGAGCCCTGTAAGCCTC
GCTCTCGGCGACACATCCATCGCCGAATCCGACCACCAGGCCGCCTTTCC
GGCGGAAGCAACACAGATAGAGTTGGTGGTGAAATGCGGGCAGTCGCAAG
CCTCAGAGGTCGGGAGACCAACG back to topCoding sequence (CDS) from alignment at H-paniculata_contig16793:2174..4596- >mRNA_H-paniculata_contig16793.3822.1 ID=mRNA_H-paniculata_contig16793.3822.1|Name=mRNA_H-paniculata_contig16793.3822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2832bp|location=Sequence derived from alignment at H-paniculata_contig16793:2174..4596- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTCGACCAGGGAGCAACGAATACACCTACCGGGAAAACTGGTCCAA
ATTTGTAGACGGCGCTATCGCTCGACGGGCCTCGCGCAACAAGAACAGTA
GCCGAAAAGGCGGCGGCAGAAGAAGTAACAGCAAGGGCGGGAAAATGGAC
GATGATGATGCCGCGAATTTCATCACATACTGTGAAACGGACGAGAATAG
AGTTAATTTCAGAGACCTGATGCATCTGGAAGAAGTGCTGTCCCGGCTTC
AAGGGACCGGTGACGATAGGAGCAGGAGTAAGACAGCTGCAGAGACATAT
GGGTCGGGAGAAGATAATGGCGGCGTGAGAAACAGAGTGTGGGAGCAAGA
GGAGGGGCATAGCTTGAAGTCTTGCGGCGGAGGCGCGGGTGGAGGCGAGA
TACCTGGTCGGTTGAAATCACCAGACAGATGAGTCGACCAGGGAGCAACG
AATACACCTACCGGGAAAACTGGTCCAAATTTGTAGACGGCGCTATCGCT
CGACGGGCCTCGCGCAACAAGAACAGTAGCCGAAAAGGCGGCGGCAGAAG
AAGTAACAGCAAGGGCGGGAAAATGGACGATGATGATGCCGCGAATTTCA
TCACATACTGTGAAACGGACGAGAATAGAGTTAATTTCAGAGACCTGATG
CATCTGGAAGAAGTGCTGTCCCGGCTTCAAGGGACCGGTGACGATAGGAG
CAGGAGTAAGACAGCTGCAGAGACATATGGGTCGGGAGAAGATAATGGCG
GCGTGAGAAACAGAGTGTGGGAGCAAGAGGAGGGGCATAGCTTGAAGTCT
TGCGGCGGAGGCGCGGGTGGAGGCGAGATACCTGGTCGGTTGAAATCACC
AGACAGAAAACCACTAGCATCATTATCGAGCTTCAACAACAACAATAACA
ACGGCGACGACGACGGCGATGAGAATAGCAATATCTGCAGTCCTGCCCCA
AGGATGTCGAAAATATTCTCTAGTCAACCGTTCCTGCATTGTAGTAGCCC
CCGGCCGATCTCGGGCGCTGGTCGTCCTCGAATGCCATTTATCACGTCGA
CAAAAACCACTAGCATCATTATCGAGCTTCAACAACAACAATAACAACGG
CGACGACGACGGCGATGAGAATAGCAATATCTGCAGTCCTGCCCCAAGGA
TGTCGAAAATATTCTCTAGTCAACCGTTCCTGCATTGTAGTAGCCCCCGG
CCGATCTCGGGCGCTGGTCGTCCTCGAATGCCATTTATCACGTCGACAAC
GGCGGAGATCATCCCAGATGTAGTGTTCAAGATGGAAAATAGTAGTTCTG
ACGAGGTAGGGCATGCGACGACGTCGTCACCTATAGCAGAAACTAGCTGG
TCTTGTAACGGCGTTAGGGTACTGGAAGAAGACCAGGTCATTGCGCATTC
GGCGATCACCATTACAAGTCAAGGGATGCAAGGATTCAAAGATGCTTCTT
TGCGTTGCACTGACTTGGTGTGTATGAAGGCAGATACTGTTTGCATGGAG
GGAACTAGTATCCAGCAGACGATGGCAAATGTTGTTGCGCCAGGAGAAGG
TGGTGCATGTCCCATGACTTGCAAGGAACAGGCAAAGACCACGACAGACG
GCGGGCAGTCCAGTCCAGTTTGGGACGAGACTCGAATAGACGAGGATTCG
GAGGATACCATCAACAGCATGCATACGGCGGGCACATTAGACGAGCTGGT
AGCCATGGAGAAATTTCTACTAGCAGATGTACCCCACGCTCCGGTGATAG
CACACGAGAGCGACACACCGTGCGGGGGCGATTTTCTGGGCGTTACCGTT
TTAGACTGCACTAATGTTGAAAATAATAACCGAGCAGAACGCGTGCCCTT
GAGCGAAGAGGAAATCGTCACCACGGAGAACACAGTCAACGACCCATGCT
CGAGCCCTGTAAGCCTCGCTCTCGGCGACACATCCATCGCCGAATCCGAC
CACCAGGCCGCCTTTCCGGCGGAAGCAACACAGATAGAGTTGGTGGTGAA
ATGCGGGCAGTCGCAAGCCTCAGAGGTCGGGAGACCAACGACGGCGGAGA
TCATCCCAGATGTAGTGTTCAAGATGGAAAATAGTAGTTCTGACGAGGTA
GGGCATGCGACGACGTCGTCACCTATAGCAGAAACTAGCTGGTCTTGTAA
CGGCGTTAGGGTACTGGAAGAAGACCAGGTCATTGCGCATTCGGCGATCA
CCATTACAAGTCAAGGGATGCAAGGATTCAAAGATGCTTCTTTGCGTTGC
ACTGACTTGGTGTGTATGAAGGCAGATACTGTTTGCATGGAGGGAACTAG
TATCCAGCAGACGATGGCAAATGTTGTTGCGCCAGGAGAAGGTGGTGCAT
GTCCCATGACTTGCAAGGAACAGGCAAAGACCACGACAGACGGCGGGCAG
TCCAGTCCAGTTTGGGACGAGACTCGAATAGACGAGGATTCGGAGGATAC
CATCAACAGCATGCATACGGCGGGCACATTAGACGAGCTGGTAGCCATGG
AGAAATTTCTACTAGCAGATGTACCCCACGCTCCGGTGATAGCACACGAG
AGCGACACACCGTGCGGGGGCGATTTTCTGGGCGTTACCGTTTTAGACTG
CACTAATGTTGAAAATAATAACCGAGCAGAACGCGTGCCCTTGAGCGAAG
AGGAAATCGTCACCACGGAGAACACAGTCAACGACCCATGCTCGAGCCCT
GTAAGCCTCGCTCTCGGCGACACATCCATCGCCGAATCCGACCACCAGGC
CGCCTTTCCGGCGGAAGCAACACAGATAGAGTTGGTGGTGAAATGCGGGC
AGTCGCAAGCCTCAGAGGTCGGGAGACCAACG back to top
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