mRNA_H-paniculata_contig16779.3818.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16779.3818.1
Unique NamemRNA_H-paniculata_contig16779.3818.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16779.3818.1 vs. uniprot
Match: A0A6H5L421_9PHAE (Alpha-mannosidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L421_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.350e-42
Identity = 75/113 (66.37%), Postives = 90/113 (79.65%), Query Frame = 1 
Query:   40 QVFSDWVTQTIRLRRGEEHVELDWSVGPIPIGGE-------DDVDGEGAAGKEVVSRFTAPALASRGVFHTDANGREFQERVRDARPTWDLNVTQPVAGNYYPVTAAAFVRDE 357
            QVFSDWVTQT+RLRRG+ + E+DW+VGP+P+G         D   G  AAGKEV+SRF AP+LAS+G F+TD+NGREFQ RVR+ RPTWDL+VTQPVAGNYYP T A F+RDE
Sbjct:  868 QVFSDWVTQTVRLRRGQAYAEVDWAVGPVPVGSSSSSPPSSDSATGX-AAGKEVISRFWAPSLASKGTFYTDSNGREFQRRVRNERPTWDLDVTQPVAGNYYPATTAVFLRDE 979
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BLAST of mRNA_H-paniculata_contig16779.3818.1 vs. uniprot
Match: D7FJT1_ECTSI (Alpha-mannosidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT1_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 2.680e-33
Identity = 67/106 (63.21%), Postives = 75/106 (70.75%), Query Frame = 1 
Query:   40 QVFSDWVTQTIRLRRGEEHVELDWSVGPIPIGGEDDVDGEGAAGKEVVSRFTAPALASRGVFHTDANGREFQERVRDARPTWDLNVTQPVAGNYYPVTAAAFVRDE 357
            QVFSDWVTQTIRLRRG                         AAGKEV+SRF AP+LAS+G F+TD+NGREFQ RVR+ RPTWDL+VTQPVAGNYYP TAA F+RDE
Sbjct:  851 QVFSDWVTQTIRLRRG-------------------------AAGKEVISRFWAPSLASKGTFYTDSNGREFQRRVRNERPTWDLDVTQPVAGNYYPATAAVFLRDE 931
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BLAST of mRNA_H-paniculata_contig16779.3818.1 vs. uniprot
Match: A0A7K6TCP9_CALNI (MA2B1 mannosidase (Fragment) n=1 Tax=Caloenas nicobarica TaxID=187106 RepID=A0A7K6TCP9_CALNI)

HSP 1 Score: 123 bits (309), Expect = 4.940e-32
Identity = 62/120 (51.67%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:    1 PTPLHRVPSLHRL-QVFSDWVTQTIRLRRGEEHVELDWSVGPIPIGGEDDVDGEGAAGKEVVSRFTAPALASRGVFHTDANGREFQERVRDARPTWDLNVTQPVAGNYYPVTAAAFVRDE 357
            PT L + P +  L Q FS W +Q +RLR G+ ++EL+W+VGPIP+G     DG G   KE++SRF  P L + G F+TD+NGR+  ER RD RPTW+LN T+PVAGNYYPV    F++D+
Sbjct:   42 PTALLKTPLVQELHQNFSSWCSQVLRLRAGQRYLELEWTVGPIPVG-----DGWG---KEIISRFETP-LRTDGRFYTDSNGRQILERRRDYRPTWNLNQTEPVAGNYYPVNTRIFIKDQ 152
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BLAST of mRNA_H-paniculata_contig16779.3818.1 vs. uniprot
Match: UPI00146BD2FA (lysosomal alpha-mannosidase n=1 Tax=Melopsittacus undulatus TaxID=13146 RepID=UPI00146BD2FA)

HSP 1 Score: 125 bits (314), Expect = 5.180e-31
Identity = 63/113 (55.75%), Postives = 81/113 (71.68%), Query Frame = 1 
Query:   19 VPSLHRLQVFSDWVTQTIRLRRGEEHVELDWSVGPIPIGGEDDVDGEGAAGKEVVSRFTAPALASRGVFHTDANGREFQERVRDARPTWDLNVTQPVAGNYYPVTAAAFVRDE 357
            V  LH  Q FS W +Q +RL  G+ +VEL+W+VGPIP+G     DG G   KE++SRF  P L +RG F+TD+NGR+  ER RD RPTW+L+ T+PVAGNYYPVT+  F+RDE
Sbjct:  659 VQELH--QTFSSWCSQVVRLYMGQPYVELEWTVGPIPVG-----DGWG---KEIISRFQTP-LQTRGRFYTDSNGRQMMERRRDHRPTWNLSQTEPVAGNYYPVTSRIFIRDE 760
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BLAST of mRNA_H-paniculata_contig16779.3818.1 vs. uniprot
Match: A0A7R9DM77_TIMCR (Hypothetical protein n=1 Tax=Timema cristinae TaxID=61476 RepID=A0A7R9DM77_TIMCR)

HSP 1 Score: 118 bits (296), Expect = 1.870e-30
Identity = 65/118 (55.08%), Postives = 80/118 (67.80%), Query Frame = 1 
Query:    1 PTPLHRVPSLHRLQVFSDWVTQTIRLRRGEEHVELDWSVGPIPIGGEDDVDGEGAAGKEVVSRFTAPALASRGVFHTDANGREFQERVRDARPTWDLNVTQPVAGNYYPVTAAAFVRD 354
            P PL  V  +H  QV+++WV+Q IR+ + E HVE +W VGPIP+      DG    GKE VSRFT   L S G+F+TDANGRE QER RD R TW  +VT+PVAGNYYPVT+   +RD
Sbjct:    5 PGPL--VEEVH--QVYNEWVSQVIRVYKEENHVEFEWLVGPIPV-----TDG---VGKEPVSRFTTN-LESGGLFYTDANGRELQERRRDYRATWTWDVTEPVAGNYYPVTSRILIRD 109
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BLAST of mRNA_H-paniculata_contig16779.3818.1 vs. uniprot
Match: A0A4W3J604_CALMI (Glyco_hydro_38C domain-containing protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3J604_CALMI)

HSP 1 Score: 114 bits (285), Expect = 3.130e-30
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:   40 QVFSDWVTQTIRLRRGEEHVELDWSVGPIPIGGEDDVDGEGAAGKEVVSRFTAPALASRGVFHTDANGREFQERVRDARPTWDLNVTQPVAGNYYPVTAAAFVRD 354
            Q FS W +Q +RL R +  VEL+W+VGPIP+          + GKE++SRF  P L + G+F+TD+NGRE  +R RD RPTW  N T+PVAGNYYPV    F+RD
Sbjct:    7 QNFSSWCSQVVRLHRNQRMVELEWTVGPIPLAD--------SRGKEIISRFDTP-LKTDGLFYTDSNGREILQRRRDYRPTWHFNQTEPVAGNYYPVNTRIFIRD 102
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BLAST of mRNA_H-paniculata_contig16779.3818.1 vs. uniprot
Match: A0A7K8ER88_LEURO (MA2B1 mannosidase (Fragment) n=1 Tax=Leucopsar rothschildi TaxID=127929 RepID=A0A7K8ER88_LEURO)

HSP 1 Score: 118 bits (296), Expect = 4.980e-30
Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = 1 
Query:   19 VPSLHRLQVFSDWVTQTIRLRRGEEHVELDWSVGPIPIGGEDDVDGEGAAGKEVVSRFTAPALASRGVFHTDANGREFQERVRDARPTWDLNVTQPVAGNYYPVTAAAFVRDE 357
            V  LH  Q FS W +Q +RLR G+ ++EL+W+VGPIP+G     DG    GKEV+SRF  P L + G+F+TD+NGR+  ER RD RPTW+L+ ++PVAGNYYPV    F+RD+
Sbjct:   77 VQELH--QNFSAWCSQVLRLRPGQPYLELEWTVGPIPVG-----DG---LGKEVISRFQTP-LRTAGLFYTDSNGRQVLERRRDYRPTWNLSQSEPVAGNYYPVNTRIFIRDQ 178
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BLAST of mRNA_H-paniculata_contig16779.3818.1 vs. uniprot
Match: L8YDF3_TUPCH (Alpha-mannosidase n=2 Tax=Tupaia chinensis TaxID=246437 RepID=L8YDF3_TUPCH)

HSP 1 Score: 120 bits (302), Expect = 2.160e-29
Identity = 59/106 (55.66%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:   40 QVFSDWVTQTIRLRRGEEHVELDWSVGPIPIGGEDDVDGEGAAGKEVVSRFTAPALASRGVFHTDANGREFQERVRDARPTWDLNVTQPVAGNYYPVTAAAFVRDE 357
            Q FS W +Q +RL  G+ H+EL+W+VGPIP+G     DG G   KEV+SRF  P L +RG+F+TD+NGRE  +R RD RPTW LN T+PVAGNYYPV +  ++ DE
Sbjct:  753 QNFSAWCSQVVRLYPGQRHLELEWTVGPIPVG-----DGWG---KEVISRFDTP-LETRGLFYTDSNGREILQRRRDYRPTWTLNQTEPVAGNYYPVNSRIYITDE 849
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BLAST of mRNA_H-paniculata_contig16779.3818.1 vs. uniprot
Match: A0A7L4E2M2_HIRRU (MA2B1 mannosidase (Fragment) n=1 Tax=Hirundo rustica TaxID=43150 RepID=A0A7L4E2M2_HIRRU)

HSP 1 Score: 119 bits (297), Expect = 2.680e-29
Identity = 62/118 (52.54%), Postives = 80/118 (67.80%), Query Frame = 1 
Query:    4 TPLHRVPSLHRLQV-FSDWVTQTIRLRRGEEHVELDWSVGPIPIGGEDDVDGEGAAGKEVVSRFTAPALASRGVFHTDANGREFQERVRDARPTWDLNVTQPVAGNYYPVTAAAFVRD 354
            T L + P +  LQ  FS W +Q +RLR G+ ++EL+WSVGPIP+      DG    GKEV+SRF  P LA+ G FHTD+NGR+  ER RD RPTW+L+ ++PVAGNYYPV    F+ D
Sbjct:  149 TRLLKTPLVQELQQNFSAWCSQVLRLRPGQPYLELEWSVGPIPVS-----DG---LGKEVISRFRTP-LATAGRFHTDSNGRQMLERRRDYRPTWNLSQSEPVAGNYYPVNTRIFIED 257
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BLAST of mRNA_H-paniculata_contig16779.3818.1 vs. uniprot
Match: UPI0006D74692 (lysosomal alpha-mannosidase n=1 Tax=Myotis lucifugus TaxID=59463 RepID=UPI0006D74692)

HSP 1 Score: 117 bits (292), Expect = 2.910e-29
Identity = 58/105 (55.24%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:   40 QVFSDWVTQTIRLRRGEEHVELDWSVGPIPIGGEDDVDGEGAAGKEVVSRFTAPALASRGVFHTDANGREFQERVRDARPTWDLNVTQPVAGNYYPVTAAAFVRD 354
            Q FS W +Q +RL  G+ H+EL+W+VGPIP+G  DD       GKEV+SRF   AL ++G+F TD+NGRE  ER RD RPTW+LN T+PVAGNYYPV    ++ D
Sbjct:   13 QNFSAWCSQVVRLYPGQRHLELEWTVGPIPVG--DDW------GKEVISRFDT-ALETKGLFFTDSNGREILERRRDYRPTWELNQTEPVAGNYYPVNTRIYITD 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16779.3818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L421_9PHAE1.350e-4266.37Alpha-mannosidase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
D7FJT1_ECTSI2.680e-3363.21Alpha-mannosidase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A7K6TCP9_CALNI4.940e-3251.67MA2B1 mannosidase (Fragment) n=1 Tax=Caloenas nico... [more]
UPI00146BD2FA5.180e-3155.75lysosomal alpha-mannosidase n=1 Tax=Melopsittacus ... [more]
A0A7R9DM77_TIMCR1.870e-3055.08Hypothetical protein n=1 Tax=Timema cristinae TaxI... [more]
A0A4W3J604_CALMI3.130e-3051.43Glyco_hydro_38C domain-containing protein n=1 Tax=... [more]
A0A7K8ER88_LEURO4.980e-3053.10MA2B1 mannosidase (Fragment) n=1 Tax=Leucopsar rot... [more]
L8YDF3_TUPCH2.160e-2955.66Alpha-mannosidase n=2 Tax=Tupaia chinensis TaxID=2... [more]
A0A7L4E2M2_HIRRU2.680e-2952.54MA2B1 mannosidase (Fragment) n=1 Tax=Hirundo rusti... [more]
UPI0006D746922.910e-2955.24lysosomal alpha-mannosidase n=1 Tax=Myotis lucifug... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16779contigH-paniculata_contig16779:970..1326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue1.7e-28
Seed eggNOG ortholog2880.D7FJT1
KEGG koko:K01191,ko:K12311
KEGG ReactionR08717,R08718
KEGG Pathwayko00511,ko04142,map00511,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0005575,GO:0005576,GO:0005615,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005774,GO:0005775,GO:0005975,GO:0005996,GO:0006013,GO:0006464,GO:0006517,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009100,GO:0009311,GO:0009313,GO:0009505,GO:0009987,GO:0012505,GO:0015923,GO:0016020,GO:0016052,GO:0016192,GO:0016787,GO:0016798,GO:0019318,GO:0019538,GO:0030141,GO:0030312,GO:0031090,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0035578,GO:0036211,GO:0036230,GO:0042119,GO:0042582,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048046,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0071704,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099503,GO:1901135,GO:1901564,GO:1901575
EggNOG free text desc.mannose metabolic process
EggNOG OGsKOG1959@1,KOG1959@2759
EC3.2.1.24
COG Functional cat.G
CAZyGH38
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929330.5281081-CDS-H-paniculata_contig16779:969..13261622929330.5281081-CDS-H-paniculata_contig16779:969..1326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16779 970..1326 -
1691480817.935513-CDS-H-paniculata_contig16779:969..13261691480817.935513-CDS-H-paniculata_contig16779:969..1326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16779 970..1326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16779.3818.1prot_H-paniculata_contig16779.3818.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16779 970..1326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16779.3818.1

>prot_H-paniculata_contig16779.3818.1 ID=prot_H-paniculata_contig16779.3818.1|Name=mRNA_H-paniculata_contig16779.3818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
PTPLHRVPSLHRLQVFSDWVTQTIRLRRGEEHVELDWSVGPIPIGGEDDV
DGEGAAGKEVVSRFTAPALASRGVFHTDANGREFQERVRDARPTWDLNVT
QPVAGNYYPVTAAAFVRDE
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mRNA from alignment at H-paniculata_contig16779:970..1326-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16779.3818.1 ID=mRNA_H-paniculata_contig16779.3818.1|Name=mRNA_H-paniculata_contig16779.3818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=357bp|location=Sequence derived from alignment at H-paniculata_contig16779:970..1326- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGACCCCGCTCCACCGTGTCCCGTCGCTCCATCGTTTACAGGTGTTCTC
GGACTGGGTGACACAAACCATTCGGCTCCGCCGCGGCGAAGAGCACGTCG
AACTGGACTGGTCAGTCGGTCCCATTCCGATTGGCGGCGAAGATGACGTC
GACGGAGAAGGGGCGGCTGGGAAGGAGGTAGTATCGAGGTTCACGGCGCC
GGCCCTGGCGTCCCGCGGGGTGTTTCACACGGATGCGAACGGGCGGGAGT
TCCAGGAGAGGGTGAGGGATGCACGGCCGACGTGGGACTTGAATGTCACC
CAGCCGGTCGCGGGAAATTACTACCCTGTTACGGCGGCGGCGTTTGTGAG
GGACGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig16779:970..1326-

>mRNA_H-paniculata_contig16779.3818.1 ID=mRNA_H-paniculata_contig16779.3818.1|Name=mRNA_H-paniculata_contig16779.3818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig16779:970..1326- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGACCCCGCTCCACCGTGTCCCGTCGCTCCATCGTTTACAGGTGTTCTC
GGACTGGGTGACACAAACCATTCGGCTCCGCCGCGGCGAAGAGCACGTCG
AACTGGACTGGTCAGTCGGTCCCATTCCGATTGGCGGCGAAGATGACGTC
GACGGAGAAGGGGCGGCTGGGAAGGAGGTAGTATCGAGGTTCACGGCGCC
GGCCCTGGCGTCCCGCGGGGTGTTTCACACGGATGCGAACGGGCGGGAGT
TCCAGGAGAGGGTGAGGGATGCACGGCCGACGTGGGACTTGAATGTCACC
CAGCCGGTCGCGGGAAATTACTACCCTGTTACGGCGGCGGCGTTTGTGAG
GGACGAGCCGACCCCGCTCCACCGTGTCCCGTCGCTCCATCGTTTACAGG
TGTTCTCGGACTGGGTGACACAAACCATTCGGCTCCGCCGCGGCGAAGAG
CACGTCGAACTGGACTGGTCAGTCGGTCCCATTCCGATTGGCGGCGAAGA
TGACGTCGACGGAGAAGGGGCGGCTGGGAAGGAGGTAGTATCGAGGTTCA
CGGCGCCGGCCCTGGCGTCCCGCGGGGTGTTTCACACGGATGCGAACGGG
CGGGAGTTCCAGGAGAGGGTGAGGGATGCACGGCCGACGTGGGACTTGAA
TGTCACCCAGCCGGTCGCGGGAAATTACTACCCTGTTACGGCGGCGGCGT
TTGTGAGGGACGAG
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