mRNA_H-paniculata_contig16776.3817.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16776.3817.1
Unique NamemRNA_H-paniculata_contig16776.3817.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16776.3817.1 vs. uniprot
Match: A0A6H5L639_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L639_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 8.230e-16
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:   10 EWIDISLAKQLQLASTAVCADCRECVSFHVRVVTRTPRRLWTEPSRTKKGCRRGGRGAGALRVPMLRTGRLTFGQYYNKSVTNVRWPEEVTEIA 291
            E + +++ KQLQLAS+++C DCRE   FHV V +RTPRRLWT  SR  +G  R  + AG   VP +   +L     +N ++T +RWPE + EIA
Sbjct:  111 ELVPVTIIKQLQLASSSICGDCRELTEFHVNVNSRTPRRLWTA-SRDARGQGRSRKVAGVPGVPPVLVRQLKLSDCFNPTLTGIRWPERLREIA 203
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BLAST of mRNA_H-paniculata_contig16776.3817.1 vs. uniprot
Match: D7G4C1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4C1_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 9.670e-15
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:    1 MAAEWIDISLAKQLQLASTAVCADCRECVSFHVRVVTRTPRRLWTEPSRTKKGCRRGGRGAGALRVPMLRTGRLTFGQYYNKSVTNVRWPEEVTEIA 291
            M ++W  +   KQLQLAS ++C++ R C +FH+RVV RTP+RLWT  S T       G+  G   VP +R   LTF +Y+  +V NV W   + +I+
Sbjct:    1 MLSKWATLKSVKQLQLASLSICSESRACTAFHLRVVRRTPKRLWTTTSST-------GKRVGTDGVPPMRVDWLTFREYFEPAVRNVVWRAGLRKIS 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16776.3817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L639_9PHAE8.230e-1645.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4C1_ECTSI9.670e-1541.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16776contigH-paniculata_contig16776:3806..4594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size528
Cds size528
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929329.8808806-CDS-H-paniculata_contig16776:3805..38801622929329.8808806-CDS-H-paniculata_contig16776:3805..3880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16776 3806..3880 -
1691480817.9089222-CDS-H-paniculata_contig16776:3805..38801691480817.9089222-CDS-H-paniculata_contig16776:3805..3880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16776 3806..3880 -
1622929329.8948274-CDS-H-paniculata_contig16776:4141..45941622929329.8948274-CDS-H-paniculata_contig16776:4141..4594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16776 4142..4594 -
1691480817.92399-CDS-H-paniculata_contig16776:4141..45941691480817.92399-CDS-H-paniculata_contig16776:4141..4594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16776 4142..4594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16776.3817.1prot_H-paniculata_contig16776.3817.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16776 3806..4594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16776.3817.1

>prot_H-paniculata_contig16776.3817.1 ID=prot_H-paniculata_contig16776.3817.1|Name=mRNA_H-paniculata_contig16776.3817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp
MAAEWIDISLAKQLQLASTAVCADCRECVSFHVRVVTRTPRRLWTEPSRT
KKGCRRGGRGAGALRVPMLRTGRLTFGQYYNKSVTNVRWPEEVTEIAFGQ
RFNQTVDNVHWPPSIVSLRFGCYFNNPIVGVGSWPAGLQKLRFGCSFNQS
LVCGIHWPADSNLKQLRFGCLFNRSL
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mRNA from alignment at H-paniculata_contig16776:3806..4594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16776.3817.1 ID=mRNA_H-paniculata_contig16776.3817.1|Name=mRNA_H-paniculata_contig16776.3817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=789bp|location=Sequence derived from alignment at H-paniculata_contig16776:3806..4594- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGCCGAATGGATTGACATCTCTCTCGCCAAGCAGCTGCAACTTGC
ATCCACAGCGGTGTGCGCTGACTGCCGAGAGTGCGTATCCTTCCACGTGC
GGGTCGTGACGAGGACTCCCCGCCGCCTGTGGACAGAGCCCAGCAGGACA
AAAAAGGGTTGCCGACGGGGGGGTAGGGGTGCTGGAGCGCTGCGTGTGCC
CATGTTACGGACGGGCAGGCTTACCTTTGGTCAATACTATAATAAATCTG
TCACCAACGTCAGATGGCCTGAAGAAGTCACGGAAATCGCATTCGGGCAG
AGATTCAATCAGACTGTCGACAATGTTCACTGGCCTCCTTCGATAGTTAG
CCTGCGGTTTGGATGCTATTTCAACAACCCCATCGTCGGTGTAGGCTCGT
GGCCGGCTGGGCTTCAGAAGCTGAGATTCGGGTGTTCATTCAACCAGAGT
TTGGTTTCAGTTGATTGGCCTCAAGGTTTACAAGAAATCGTTCTTGGAGC
AGAGTTTGACGAGCCTGTTAGTGAGGTCACGTGGCCAGCGCGGTTGAAGG
TTCTCGTGCTTGGGATTGCTTTCAATCAGCCAATTGCAGAGGCCGTGTGG
CCCAAGGAGCTGCGGCACATTGTGTTCGGTAATGTTTTCGACCAGCCGAT
GGACGGGGTAGCGTTCCCTGCCAGCCTCGAAAGCCTGGAATTCGGCGTGA
ACTTTGACCAGGAGGTCTGCGGAATTCATTGGCCAGCTGACAGCAACCTC
AAGCAGCTAAGATTTGGCTGCTTGTTCAACCGGTCTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig16776:3806..4594-

>mRNA_H-paniculata_contig16776.3817.1 ID=mRNA_H-paniculata_contig16776.3817.1|Name=mRNA_H-paniculata_contig16776.3817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at H-paniculata_contig16776:3806..4594- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGCCGAATGGATTGACATCTCTCTCGCCAAGCAGCTGCAACTTGC
ATCCACAGCGGTGTGCGCTGACTGCCGAGAGTGCGTATCCTTCCACGTGC
GGGTCGTGACGAGGACTCCCCGCCGCCTGTGGACAGAGCCCAGCAGGACA
AAAAAGGGTTGCCGACGGGGGGGTAGGGGTGCTGGAGCGCTGCGTGTGCC
CATGTTACGGACGGGCAGGCTTACCTTTGGTCAATACTATAATAAATCTG
TCACCAACGTCAGATGGCCTGAAGAAGTCACGGAAATCGCATTCGGGCAG
AGATTCAATCAGACTGTCGACAATGTTCACTGGCCTCCTTCGATAGTTAG
CCTGCGGTTTGGATGCTATTTCAACAACCCCATCGTCGGTGTAGGCTCGT
GGCCGGCTGGGCTTCAGAAGCTGAGATTCGGGTGTTCATTCAACCAGAGT
TTGATGGCAGCCGAATGGATTGACATCTCTCTCGCCAAGCAGCTGCAACT
TGCATCCACAGCGGTGTGCGCTGACTGCCGAGAGTGCGTATCCTTCCACG
TGCGGGTCGTGACGAGGACTCCCCGCCGCCTGTGGACAGAGCCCAGCAGG
ACAAAAAAGGGTTGCCGACGGGGGGGTAGGGGTGCTGGAGCGCTGCGTGT
GCCCATGTTACGGACGGGCAGGCTTACCTTTGGTCAATACTATAATAAAT
CTGTCACCAACGTCAGATGGCCTGAAGAAGTCACGGAAATCGCATTCGGG
CAGAGATTCAATCAGACTGTCGACAATGTTCACTGGCCTCCTTCGATAGT
TAGCCTGCGGTTTGGATGCTATTTCAACAACCCCATCGTCGGTGTAGGCT
CGTGGCCGGCTGGGCTTCAGAAGCTGAGATTCGGGTGTTCATTCAACCAG
AGTTTGGTCTGCGGAATTCATTGGCCAGCTGACAGCAACCTCAAGCAGCT
AAGATTTGGCTGCTTGTTCAACCGGTCTCTGGTCTGCGGAATTCATTGGC
CAGCTGACAGCAACCTCAAGCAGCTAAGATTTGGCTGCTTGTTCAACCGG
TCTCTG
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