mRNA_H-paniculata_contig16763.3814.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16763.3814.1
Unique NamemRNA_H-paniculata_contig16763.3814.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16763.3814.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.970e-21
Identity = 42/82 (51.22%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:   43 LNPRKAKVVTEFFGDMMGTTAAPADIFLGFTVDQGGNVFNPIDSLGIPVLKCNAHRLNTGVMWALRIAGNTNTCKNKPMEKV 288
            + P    +  E+F D+MG +    D+FL FTVDQG NV N   +LG+PV++CN HR+N+ V+WAL IAG+  TCKNKPM+K+
Sbjct:  145 IKPWIEALTLEYFTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSATTCKNKPMKKL 226
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BLAST of mRNA_H-paniculata_contig16763.3814.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 6.180e-21
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:   52 RKAKVVTEFFGDMMGTTAAPADIFLGFTVDQGGNVFNPIDSLGIPVLKCNAHRLNTGVMWALRIAGNTNTCKNKPM 279
            R +++  E+FG  MG +  P+D+FL FTVDQGGNV N   +LG+ V+KCN HR+N+ V+WAL IAG+  TC+N  M
Sbjct:    3 RNSQLTKEYFGGFMGESVEPSDVFLAFTVDQGGNVVNACTALGVQVVKCNCHRINSAVVWALGIAGSATTCRNTKM 78
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BLAST of mRNA_H-paniculata_contig16763.3814.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.280e-20
Identity = 41/82 (50.00%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:   43 LNPRKAKVVTEFFGDMMGTTAAPADIFLGFTVDQGGNVFNPIDSLGIPVLKCNAHRLNTGVMWALRIAGNTNTCKNKPMEKV 288
            + P    +  E+  D+MG +    D+FL FTVDQG NV N   +LG+PV++CN HR+N+ V+WAL IAG+  TCKNKPM+K+
Sbjct:  145 IKPWIEALTLEYLTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSVTTCKNKPMKKL 226
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BLAST of mRNA_H-paniculata_contig16763.3814.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.850e-20
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:   61 KVVTEFFGDMMGTTAAPADIFLGFTVDQGGNVFNPIDSLGIPVLKCNAHRLNTGVMWALRIAGNTNTCKNKPMEKV 288
            ++ TEFF DMMG    P D+FL FTVDQGGNV N   +L + VLKCNAHRLN+  MWAL I G+  T +N  MEK+
Sbjct:    2 QLTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKL 77
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BLAST of mRNA_H-paniculata_contig16763.3814.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 4.520e-20
Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   64 VVTEFFGDMMGTTAAPADIFLGFTVDQGGNVFNPIDSLGIPVLKCNAHRLNTGVMWALRIAGNTNTCKNKPMEKV 288
            + TEFF DMMG    P D+FL FTVDQGGNV N   +L + VLKCNAHRLN+  MWAL I G+  T +N  MEK+
Sbjct:  331 LTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKL 405
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BLAST of mRNA_H-paniculata_contig16763.3814.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 7.800e-20
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:   43 LNPRKAKVVTEFFGDMMGTTAAPADIFLGFTVDQGGNVFNPIDSLGIPVLKCNAHRLNTGVMWALRIAGNTNTCKNKPM 279
            + P    +  E+F D++G +  P D+FLGFTVDQG N+ N   +LG+PV++CN HR+N+ V+WAL IAG   TCKNK M
Sbjct:  142 IKPWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNAYTALGVPVVECNCHRVNSAVLWALGIAGCARTCKNKLM 220
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BLAST of mRNA_H-paniculata_contig16763.3814.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 3.990e-19
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:   43 LNPRKAKVVTEFFGDMMGTTAAPADIFLGFTVDQGGNVFNPIDSLGIPVLKCNAHRLNTGVMWALRIAGN 252
            ++P   ++  E+F D MG    P D+FL FTVDQGGNV N   +LG+PV+KCN HR+NT V+WAL IAGN
Sbjct:  334 ISPWIEELTREYFADFMGEDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAGN 403
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BLAST of mRNA_H-paniculata_contig16763.3814.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 6.900e-16
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:   43 LNPRKAKVVTEFFGDMMGTTAAPADIFLGFTVDQGGNVFNPIDSLGIPVLKCNAHRLNTGVMWALRIAG 249
            + P   K+  E+F   MG +  P+D+FL FTVDQG N+ N   +LG+ V++CN HRLNT V+WAL IAG
Sbjct:  141 IQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAG 209
[Close]
BLAST of mRNA_H-paniculata_contig16763.3814.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 7.010e-16
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:   43 LNPRKAKVVTEFFGDMMGTTAAPADIFLGFTVDQGGNVFNPIDSLGIPVLKCNAHRLNTGVMWALRIAG 249
            + P   K+  E+F   MG +  P+D+FL FTVDQG N+ N   +LG+ V++CN HRLNT V+WAL IAG
Sbjct:  336 IQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAG 404
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16763.3814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JQI6_9PHAE1.970e-2151.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE6.180e-2152.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE1.280e-2050.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE2.850e-2057.89Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE4.520e-2058.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JXV5_9PHAE7.800e-2050.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE3.990e-1955.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE6.900e-1650.72Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE7.010e-1650.72Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16763contigH-paniculata_contig16763:3111..3833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size289
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929329.2115252-CDS-H-paniculata_contig16763:3110..31731622929329.2115252-CDS-H-paniculata_contig16763:3110..3173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16763 3111..3173 +
1691480817.6817417-CDS-H-paniculata_contig16763:3110..31731691480817.6817417-CDS-H-paniculata_contig16763:3110..3173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16763 3111..3173 +
1622929329.2237163-CDS-H-paniculata_contig16763:3608..38331622929329.2237163-CDS-H-paniculata_contig16763:3608..3833Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16763 3609..3833 +
1691480817.6911426-CDS-H-paniculata_contig16763:3608..38331691480817.6911426-CDS-H-paniculata_contig16763:3608..3833Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16763 3609..3833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16763.3814.1prot_H-paniculata_contig16763.3814.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16763 3111..3833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16763.3814.1

>prot_H-paniculata_contig16763.3814.1 ID=prot_H-paniculata_contig16763.3814.1|Name=mRNA_H-paniculata_contig16763.3814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MRWRFASFSLSLLFLNPRKAKVVTEFFGDMMGTTAAPADIFLGFTVDQGG
NVFNPIDSLGIPVLKCNAHRLNTGVMWALRIAGNTNTCKNKPMEKV
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mRNA from alignment at H-paniculata_contig16763:3111..3833+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16763.3814.1 ID=mRNA_H-paniculata_contig16763.3814.1|Name=mRNA_H-paniculata_contig16763.3814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=723bp|location=Sequence derived from alignment at H-paniculata_contig16763:3111..3833+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGATGGCGATTTGCTTCGTTTTCGCTATCCCTTCTTTTTCTTAACCC
CCGGAAGGCTAAGGTAAAAACCTCTATCCGATGCTTCCATACCGAGTATT
TCTACATTTCCTTAACAGAACAGAGTTATTTGTTCCTCTGCGGGGTAGGC
GCCACCCCGGTGGCCAAACCAAGTAGGCAGTGTGGGGGTTGCACTCACTA
AAACACCTCTGACTAGACTTCCAGTCATGTTCAGTTCACGAGTACCCTAC
CCATTCGGGCGTAGGTCCGTGGTTTTCGCTGTCCTTTATTAAATTATTTA
CCATATACAAAATCACTTTTTTGGTCGTTTGTGAGCTGTGGCTATTGCAT
GTGCTGGCAGCACTGATTTTGTGCTTTTGTACTGTTACATTCGCTTGGGT
TTCATTTGCTAAATATCTAATGATATCATGTAATTATCACATGAACCACT
CGTTTTCTCGTCAAATGTTCAGTTGCACTATCCCCCGTCATGTATCAGGT
CGTAACGGAATTCTTCGGCGACATGATGGGAACAACTGCCGCGCCGGCCG
ACATCTTCCTCGGCTTCACTGTAGATCAAGGTGGAAACGTCTTCAACCCC
ATCGACAGCCTGGGTATTCCCGTCCTCAAGTGCAATGCGCATCGTCTGAA
CACAGGAGTGATGTGGGCGCTGCGGATTGCTGGCAACACCAACACGTGCA
AGAACAAACCCATGGAGAAGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig16763:3111..3833+

>mRNA_H-paniculata_contig16763.3814.1 ID=mRNA_H-paniculata_contig16763.3814.1|Name=mRNA_H-paniculata_contig16763.3814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig16763:3111..3833+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGATGGCGATTTGCTTCGTTTTCGCTATCCCTTCTTTTTCTTAACCC
CCGGAAGGCTAAGATGAGATGGCGATTTGCTTCGTTTTCGCTATCCCTTC
TTTTTCTTAACCCCCGGAAGGCTAAGGTCGTAACGGAATTCTTCGGCGAC
ATGATGGGAACAACTGCCGCGCCGGCCGACATCTTCCTCGGCTTCACTGT
AGATCAAGGTGGAAACGTCTTCAACCCCATCGACAGCCTGGGTATTCCCG
TCCTCAAGTGCAATGCGCATCGTCTGAACACAGGAGTGATGTGGGCGCTG
CGGATTGCTGGCAACACCAACACGTGCAAGAACAAACCCATGGAGAAGGT
CGTCGTAACGGAATTCTTCGGCGACATGATGGGAACAACTGCCGCGCCGG
CCGACATCTTCCTCGGCTTCACTGTAGATCAAGGTGGAAACGTCTTCAAC
CCCATCGACAGCCTGGGTATTCCCGTCCTCAAGTGCAATGCGCATCGTCT
GAACACAGGAGTGATGTGGGCGCTGCGGATTGCTGGCAACACCAACACGT
GCAAGAACAAACCCATGGAGAAGGTC
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