mRNA_H-paniculata_contig16744.3803.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: A0A6H5JV32_9PHAE (Selenoprotein O n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV32_9PHAE) HSP 1 Score: 378 bits (971), Expect = 6.600e-125 Identity = 182/217 (83.87%), Postives = 197/217 (90.78%), Query Frame = 1
Query: 1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEKYDDMYKSYYDEGMRRKLGLFSREEADDGLFESLFATMADTSADFTGVFRELAEMTPDGDVETVAKALVAQCAGPKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENPEALALRFGAPK 651
YEE VRSTAELV+KWQCVGFTHGVLNTDNMS+LGLTIDYGPYGFMDFFDP+FVPNGSD GGRYSY++QPE+CKWNL KFAEAL PALPL DS AALEKYD ++K YY+EGMRRKLGLFS EE DDGLFESLFATMADTSADFTG FRELA++ P GDV+TV+KAL AQCAGPKIKAK LRRA+DIGRP+IP QLQGLWAMAQ NPEALA RF APK
Sbjct: 361 YEEAVRSTAELVAKWQCVGFTHGVLNTDNMSILGLTIDYGPYGFMDFFDPKFVPNGSDGGGRYSYERQPEMCKWNLHKFAEALAPALPLSDSTAALEKYDGLFKRYYEEGMRRKLGLFSVEEDDDGLFESLFATMADTSADFTGTFRELAQLAPGGDVDTVSKALAAQCAGPKIKAKALRRAVDIGRPSIPPQQLQGLWAMAQGNPEALAQRFSAPK 577
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: A0A836CN66_9STRA (Selenoprotein O n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN66_9STRA) HSP 1 Score: 247 bits (630), Expect = 4.130e-75 Identity = 125/219 (57.08%), Postives = 150/219 (68.49%), Query Frame = 1
Query: 1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEKYDDMYKSYYDEGMRRKLGLFSREEADDGLFESLFATMADTSADFTGVFRELAEMTP----DGDVETVAKALVAQCAGPKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENPEALALRFGA 645
YE+VV+ TAEL + WQCVGFTHGVLNTDNMSLLGLTIDYGPYGFM+ FD +VPNGSD GRY Y QPEICKWNL KF EAL P LP + + L+ YDD+Y+ Y MR KLGL + E D LF SLF MA T+ADFTG FR L + + + A AL + CA P++ A+ + RA IGRP P +L+ LWA+ Q NPEA+A +FGA
Sbjct: 266 YEDVVKRTAELAAAWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMEHFDRDYVPNGSDGTGRYRYQDQPEICKWNLGKFLEALLPVLPRDAAETTLDTYDDIYERAYASRMRAKLGLTTAEPGDAALFASLFDAMAATAADFTGTFRALIDFAAGPRDSAAITSSAAALASICATPEVLARSIARAQRIGRPGAPPDRLRALWALVQSNPEAVAAQFGA 484
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: I2CP48_NANGC (Selenoprotein O (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP48_NANGC) HSP 1 Score: 236 bits (603), Expect = 1.490e-71 Identity = 131/223 (58.74%), Postives = 153/223 (68.61%), Query Frame = 1
Query: 1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEK-YDDMYKSYYDEGMRRKLGLFSREEADDG------LFESLFATMADTSADFTGVFRELAEMTPDG-DVETVAKALVAQCAGPKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENPEALALRFGA 645
Y EVV TA LV+ WQ VGFTHGVLNTDNMS+LGLTIDYGPYGFMDFFDP F+PNGSD+GGRY+Y KQPEICKWNL KFAEAL LPL+ S L YDD Y Y MR+KLGL RE +G L E LF TM +T+ADFT F EL+ + DG + E V KAL + CA P + A L + L I RPT+P+ Q Q LWA+AQ++ +A FGA
Sbjct: 327 YREVVAKTAGLVAAWQAVGFTHGVLNTDNMSVLGLTIDYGPYGFMDFFDPDFIPNGSDNGGRYTYVKQPEICKWNLEKFAEALSLLLPLDRSLPLLSSLYDDEYSRAYFFLMRKKLGL--REGGAEGGKEEEELVEKLFKTMEETAADFTMTFVELSRLERDGRNKEEVIKALASHCAPPSVLAASLTKKLRISRPTMPSGQTQQLWALAQQDRGKIAEIFGA 547
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: A0A7S2V3H2_9STRA (Selenoprotein O n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3H2_9STRA) HSP 1 Score: 229 bits (584), Expect = 1.000e-67 Identity = 119/223 (53.36%), Postives = 150/223 (67.26%), Query Frame = 1
Query: 1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEK-YDDMYKSYYDEGMRRKLGLFSREEA----DDGLFESLFATMADTSADFTGVFRELAEMTPDGD--VETVAKALVAQCAGPKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENPEALALRFGAP 648
Y+EVV+ TA LV+ WQC GFTHGVLNTDNMS+LGLTIDYGP+GFM+++DP +VPNGSD+ GRYSY KQP+IC+WNL+K EAL ALP++ S A LE+ Y +Y Y+ M +KLGL+ ++ D L SLF TM S+DFT FR+LA P VE A++L Q A P + KVLRR + + R + QLQ L M +ENP L RFGAP
Sbjct: 321 YKEVVQKTARLVALWQCTGFTHGVLNTDNMSILGLTIDYGPFGFMEYYDPNYVPNGSDNAGRYSYTKQPDICRWNLMKLGEALQEALPMDQSRAILEQEYWKVYDRAYETRMLQKLGLWEDQQEVSLEDKQLISSLFDTMEACSSDFTNTFRQLAAFDPSSGEGVEVAARSLSKQSAPPGVLDKVLRRTMGLSRTRMDPRQLQALLQMLEENPAELEARFGAP 543
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: UPI001402BBC7 (protein adenylyltransferase SelO, mitochondrial n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001402BBC7) HSP 1 Score: 217 bits (553), Expect = 2.370e-63 Identity = 120/216 (55.56%), Postives = 147/216 (68.06%), Query Frame = 1
Query: 1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEKYDDMYKSYYDEGMRRKLGLFSREEADD-GLFESLFATMADTSADFTGVFRELAEMTPD-GDVETVAKALVAQCAGPKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENPEALALRFG 642
+ EVVR TA LV++WQCVGF HGVLNTDNMS+LGLTIDYGP+GFMD FDP +V NGSD GGRY+YD+QPE+C+WNL K AEAL P LP E S L++Y +Y++ Y MRRKLGL E+ DD GL SL TM T ADFT FR L+ +T + G VE +A L QCA + ++RA +P I QL L A+AQ NP+ L + FG
Sbjct: 311 FREVVRRTAHLVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFGFMDRFDPHYVCNGSDEGGRYAYDQQPEMCRWNLEKLAEALAPTLPTEQSRPVLDEYGALYEAAYLRKMRRKLGLGLLEQPDDAGLVTSLLETMQSTGADFTNSFRLLSRLTLEPGSVEELATLLCQQCA----TVEEMKRAY---KPRIDPRQLSLLLALAQANPQVLRM-FG 518
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: A0A3Q2Z5B8_HIPCM (Selenoprotein O n=2 Tax=Syngnathidae TaxID=72045 RepID=A0A3Q2Z5B8_HIPCM) HSP 1 Score: 208 bits (529), Expect = 9.210e-60 Identity = 110/216 (50.93%), Postives = 141/216 (65.28%), Query Frame = 1
Query: 1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEKYDDMYKSYYDEGMRRKLGLFSREEADDG-LFESLFATMADTSADFTGVFRELAEMT--PDGDVET-------VAKALVAQCAGPKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENP 618
+ EV+R TA LV++WQCVGF HGVLNTDNMS+LGLT+DYGPYGFMD FDP+F+ N SD+ GRYSY QP IC+WNL+K AEALDP LP + + A +E+Y D+Y S Y + MRRKLGL ++E +D L L TM +T ADFT FR L+ ++ +G+ ET A L+ QCA L +PT+ +L L +MAQ NP
Sbjct: 310 FREVMRRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPYGFMDRFDPEFICNASDNSGRYSYQAQPAICRWNLVKLAEALDPELPPDRAKAVMEEYLDLYNSCYLDNMRRKLGLLKKQEPEDEILITELLQTMHNTGADFTNTFRSLSHISCPSEGESETEEELVRDAANLLLEQCAS-------LEELKAANKPTMDPRELAMLLSMAQSNP 518
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: A0A3Q0RHN7_AMPCI (Selenoprotein O n=1 Tax=Amphilophus citrinellus TaxID=61819 RepID=A0A3Q0RHN7_AMPCI) HSP 1 Score: 205 bits (521), Expect = 1.090e-59 Identity = 109/216 (50.46%), Postives = 141/216 (65.28%), Query Frame = 1
Query: 1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEKYDDMYKSYYDEGMRRKLGLFSREEADDG-LFESLFATMADTSADFTGVFRELAEMT------PDGDVETVAKA---LVAQCAGPKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENP 618
+ EVV TA LV++WQCVGF HGVLNTDNMS+LGLT+DYGPYGFMD FDP F+ N SD+ GRYSY QP IC+WNL+K AEAL P LP + + A L++Y D+Y S+Y E MR+KLGL +E+ +D L L TM +T ADFT FR L++++ +G+ + V KA L+ QCA L +PT+ +L L +MAQ NP
Sbjct: 193 FREVVLRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPYGFMDRFDPDFICNASDNSGRYSYQAQPAICRWNLVKLAEALAPELPPDRAEAVLDEYMDLYNSFYLENMRKKLGLLKKEDPEDEILITKLLQTMHNTGADFTNTFRSLSQISCPTEGDGEGEEDCVKKATDLLMEQCAS-------LEELKAANKPTMDPRELAMLLSMAQSNP 401
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: A0A668RTU6_OREAU (Selenoprotein O n=1 Tax=Oreochromis aureus TaxID=47969 RepID=A0A668RTU6_OREAU) HSP 1 Score: 204 bits (518), Expect = 2.680e-59 Identity = 110/217 (50.69%), Postives = 142/217 (65.44%), Query Frame = 1
Query: 1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEKYDDMYKSYYDEGMRRKLGLFSREEADDGLF-ESLFATMADTSADFTGVFRELA------EMTPDGDVETVAKA---LVAQCAG-PKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENP 618
+ EVV TA LV++WQCVGF HGVLNTDNMS+LGLT+DYGPYGFMD FDP F+ N SD+ GRYSY QP IC+WNL+K AEAL P LP + + A LE+Y D+Y +Y E MR+KLGL +E+ +D + L TM +T ADFT FR L+ E +G+ ++V KA L+ QCA ++KA +PT+ +L L +MAQ NP
Sbjct: 159 FREVVLRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPYGFMDRFDPDFICNASDNSGRYSYQAQPAICRWNLVKLAEALAPELPPDRAEAVLEEYLDLYNRFYLENMRKKLGLLKKEDPEDEIMITKLLQTMHNTGADFTNTFRSLSLISCPTEENSEGEEDSVKKATDLLIEQCASIEELKAA--------NKPTMDPRELAMLLSMAQSNP 367
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: A0A1A8SKC4_9TELE (Selenoprotein O n=12 Tax=Nothobranchiidae TaxID=405002 RepID=A0A1A8SKC4_9TELE) HSP 1 Score: 206 bits (525), Expect = 3.390e-59 Identity = 109/215 (50.70%), Postives = 138/215 (64.19%), Query Frame = 1
Query: 1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEKYDDMYKSYYDEGMRRKLGLFSREEADDG-LFESLFATMADTSADFTGVFREL--------AEMTPDGDVETVAKALVAQCAGPKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENP 618
+ EV+R TA LV++WQCVGF HGVLNTDNMS+LGLT+DYGPYGFMD FDP F+ N SDS GRYSY QP IC+WNL+K AEAL P LP E + A +++Y D++ +Y E MR+KLGLF +EE +D L L TM +T ADFT FR L AE + D++ A L+ QCA L +PT+ +L L ++AQ NP
Sbjct: 310 FREVMRRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPYGFMDRFDPDFICNASDSSGRYSYQAQPAICRWNLVKLAEALAPELPAERAEAVMDEYLDLFNRFYLENMRKKLGLFVKEEPEDEMLITELLQTMHNTGADFTNTFRSLSLICCPTEAETGGEEDLKRTADLLLHQCAS-------LEELKAANKPTMDPRELAMLLSLAQSNP 517
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Match: I3JW73_ORENI (Selenoprotein O n=34 Tax=Percomorphaceae TaxID=1489872 RepID=I3JW73_ORENI) HSP 1 Score: 204 bits (520), Expect = 1.810e-58 Identity = 109/216 (50.46%), Postives = 139/216 (64.35%), Query Frame = 1
Query: 1 YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPQFVPNGSDSGGRYSYDKQPEICKWNLLKFAEALDPALPLEDSAAALEKYDDMYKSYYDEGMRRKLGLFSREEADDGLF-ESLFATMADTSADFTGVFRELA------EMTPDGDVETVAKA---LVAQCAGPKIKAKVLRRALDIGRPTIPAHQLQGLWAMAQENP 618
+ EVV TA LV++WQCVGF HGVLNTDNMS+LGLT+DYGPYGFMD FDP F+ N SD+ GRYSY QP IC+WNL+K AEAL P LP + + A LE+Y D+Y +Y E MR+KLGL +E+ +D + L TM +T ADFT FR L+ E +G+ ++V KA L+ QCA L +PT+ +L L +MAQ NP
Sbjct: 310 FREVVLRTARLVAQWQCVGFCHGVLNTDNMSILGLTLDYGPYGFMDRFDPDFICNASDNSGRYSYQAQPAICRWNLVKLAEALAPELPPDRAEAVLEEYLDLYNRFYLENMRKKLGLLKKEDPEDEIMITKLLQTMHNTGADFTNTFRSLSLISCPTEENSEGEEDSVKKATDLLIEQCAS-------LEELKAANKPTMEPRELAMLLSMAQSNP 518 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16744.3803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16744.3803.1 >prot_H-paniculata_contig16744.3803.1 ID=prot_H-paniculata_contig16744.3803.1|Name=mRNA_H-paniculata_contig16744.3803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp YEEVVRSTAELVSKWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMDFFDPback to top mRNA from alignment at H-paniculata_contig16744:227..4465- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16744.3803.1 ID=mRNA_H-paniculata_contig16744.3803.1|Name=mRNA_H-paniculata_contig16744.3803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4239bp|location=Sequence derived from alignment at H-paniculata_contig16744:227..4465- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16744:227..4465- >mRNA_H-paniculata_contig16744.3803.1 ID=mRNA_H-paniculata_contig16744.3803.1|Name=mRNA_H-paniculata_contig16744.3803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at H-paniculata_contig16744:227..4465- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |