mRNA_H-paniculata_contig16727.3796.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16727.3796.1
Unique NamemRNA_H-paniculata_contig16727.3796.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16727.3796.1 vs. uniprot
Match: D8LAS9_ECTSI (Sphingosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAS9_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.050e-14
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1
Query:    1 SDVDIESEAYRWLGSLRFTVGTVFRIIGLRHYRGRISFLPACLDADGSPAAS 156
            SDVDIESEAYRW+GSLRFTVGT+ RI  L+HYRGRISFLP   D D + A +
Sbjct:  388 SDVDIESEAYRWMGSLRFTVGTIVRIANLKHYRGRISFLP---DLDAAAATT 436          
BLAST of mRNA_H-paniculata_contig16727.3796.1 vs. uniprot
Match: Q28EJ9_XENTR (Sphingosine kinase 1 n=3 Tax=Xenopus tropicalis TaxID=8364 RepID=Q28EJ9_XENTR)

HSP 1 Score: 65.9 bits (159), Expect = 4.760e-11
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1
Query:    1 SDVDIESEAYRWLGSLRFTVGTVFRIIGLRHYRGRISFLPACLDADGSPAASAH 162
            SDVDIESE YR++GS RF+ GT  R+  LR YRGR+S+LPA    D +P + +H
Sbjct:  304 SDVDIESERYRFMGSARFSFGTFVRLTALRTYRGRLSYLPARTSPDSTPESDSH 357          
BLAST of mRNA_H-paniculata_contig16727.3796.1 vs. uniprot
Match: A0A8D2PLK3_ZOSLA (Sphingosine kinase 1 n=1 Tax=Zosterops lateralis melanops TaxID=1220523 RepID=A0A8D2PLK3_ZOSLA)

HSP 1 Score: 65.1 bits (157), Expect = 6.190e-11
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:    1 SDVDIESEAYRWLGSLRFTVGTVFRIIGLRHYRGRISFLPACLDADGSPA 150
            SDVDI+SE YRWLGS RFT+GT+  +  LR Y+GR+S+LP   +  GSPA
Sbjct:  145 SDVDIDSEKYRWLGSARFTLGTLQCLAKLRVYQGRLSYLPVAAEQGGSPA 194          
BLAST of mRNA_H-paniculata_contig16727.3796.1 vs. uniprot
Match: A0A3M6TSS3_POCDA (DAGKc domain-containing protein n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6TSS3_POCDA)

HSP 1 Score: 65.5 bits (158), Expect = 6.520e-11
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    1 SDVDIESEAYRWLGSLRFTVGTVFRIIGLRHYRGRISFLPA 123
            SDVDIESE YR+LG  RF +GTV RIIGLR YRGR+S+LPA
Sbjct:  296 SDVDIESERYRFLGERRFLIGTVARIIGLRKYRGRLSYLPA 336          
BLAST of mRNA_H-paniculata_contig16727.3796.1 vs. uniprot
Match: A0A8C0ZCZ9_CYACU (Sphingosine kinase 1 n=1 Tax=Cyanistes caeruleus TaxID=156563 RepID=A0A8C0ZCZ9_CYACU)

HSP 1 Score: 65.1 bits (157), Expect = 7.040e-11
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 SDVDIESEAYRWLGSLRFTVGTVFRIIGLRHYRGRISFLPACLDADGSPAASA 159
            SDVDI+SE YRWLGS RFT+GT+  +  LR Y+GR+S+LP   +   SPAA A
Sbjct:  175 SDVDIDSEKYRWLGSARFTLGTLQCLAKLRVYQGRLSYLPMAAEQGSSPAARA 227          
BLAST of mRNA_H-paniculata_contig16727.3796.1 vs. uniprot
Match: UPI000A2A879A (sphingosine kinase 2 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A879A)

HSP 1 Score: 64.7 bits (156), Expect = 1.220e-10
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1
Query:    1 SDVDIESEAYRWLGSLRFTVGTVFRIIGLRHYRGRISFLPACLDAD 138
            SDVDIESE YR+LG+ RFT+G V RI+GLR YRGR+S+LP   D D
Sbjct:  291 SDVDIESEKYRYLGNARFTLGAVIRILGLRTYRGRLSYLPDDDDND 336          
BLAST of mRNA_H-paniculata_contig16727.3796.1 vs. uniprot
Match: A0A3Q3EWV2_KRYMA (Sphingosine kinase 2 n=3 Tax=Rivulidae TaxID=28771 RepID=A0A3Q3EWV2_KRYMA)

HSP 1 Score: 64.7 bits (156), Expect = 1.230e-10
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 SDVDIESEAYRWLGSLRFTVGTVFRIIGLRHYRGRISFLPACL---DADGSPAASAHSVGQSV 180
            SDVDIESE YR LGS RFT+GT+ RI  LR Y+GR+S+LP  +    A+G+P  S   + +S+
Sbjct:  336 SDVDIESERYRGLGSARFTLGTLVRIASLRSYKGRLSYLPPSVVTTTANGTPPPSKRPLSRSI 398          
BLAST of mRNA_H-paniculata_contig16727.3796.1 vs. uniprot
Match: A0A3P8UXF8_CYNSE (Sphingosine kinase 2-like n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8UXF8_CYNSE)

HSP 1 Score: 64.7 bits (156), Expect = 1.230e-10
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 SDVDIESEAYRWLGSLRFTVGTVFRIIGLRHYRGRISFLPACL 129
            SDVDIESE YR LGS RFT+GT+ RI  LR Y+GR+SFLP C+
Sbjct:  335 SDVDIESERYRGLGSARFTLGTLVRIASLRSYKGRLSFLPPCV 377          
BLAST of mRNA_H-paniculata_contig16727.3796.1 vs. uniprot
Match: A0A4Z2CEP1_9TELE (DAGKc domain-containing protein n=1 Tax=Takifugu bimaculatus TaxID=433685 RepID=A0A4Z2CEP1_9TELE)

HSP 1 Score: 63.5 bits (153), Expect = 2.230e-10
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 SDVDIESEAYRWLGSLRFTVGTVFRIIGLRHYRGRISFLP-ACLDA-DGSPAASAHSVGQSV 180
            SDVDIESE YR LGS RFT+GT+ RI  LR Y+GR+SFLP +C  + D +P     ++ +S+
Sbjct:   94 SDVDIESERYRGLGSARFTLGTLVRIASLRSYKGRLSFLPPSCTSSPDATPPPPRRALSRSI 155          
BLAST of mRNA_H-paniculata_contig16727.3796.1 vs. uniprot
Match: A0A1A7YG76_9TELE (Sphingosine kinase 2 (Fragment) n=4 Tax=Nothobranchiidae TaxID=405002 RepID=A0A1A7YG76_9TELE)

HSP 1 Score: 63.9 bits (154), Expect = 2.280e-10
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 SDVDIESEAYRWLGSLRFTVGTVFRIIGLRHYRGRISFLPACL---DADGSPAASAHSVGQSV 180
            SDVDIESE YR LGS RFT+GT+ RI  LR Y+GR+SFLP+ +    ++G+P      + +S+
Sbjct:  332 SDVDIESERYRGLGSARFTLGTLVRIASLRSYKGRLSFLPSSVVTKSSNGTPPPPKRPLSRSI 394          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16727.3796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAS9_ECTSI1.050e-1471.15Sphingosine kinase n=1 Tax=Ectocarpus siliculosus ... [more]
Q28EJ9_XENTR4.760e-1155.56Sphingosine kinase 1 n=3 Tax=Xenopus tropicalis Ta... [more]
A0A8D2PLK3_ZOSLA6.190e-1160.00Sphingosine kinase 1 n=1 Tax=Zosterops lateralis m... [more]
A0A3M6TSS3_POCDA6.520e-1175.61DAGKc domain-containing protein n=2 Tax=Pocillopor... [more]
A0A8C0ZCZ9_CYACU7.040e-1158.49Sphingosine kinase 1 n=1 Tax=Cyanistes caeruleus T... [more]
UPI000A2A879A1.220e-1067.39sphingosine kinase 2 n=1 Tax=Exaiptasia diaphana T... [more]
A0A3Q3EWV2_KRYMA1.230e-1052.38Sphingosine kinase 2 n=3 Tax=Rivulidae TaxID=28771... [more]
A0A3P8UXF8_CYNSE1.230e-1069.77Sphingosine kinase 2-like n=1 Tax=Cynoglossus semi... [more]
A0A4Z2CEP1_9TELE2.230e-1053.23DAGKc domain-containing protein n=1 Tax=Takifugu b... [more]
A0A1A7YG76_9TELE2.280e-1050.79Sphingosine kinase 2 (Fragment) n=4 Tax=Nothobranc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16727contigH-paniculata_contig16727:209..397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue4.5e-12
Seed eggNOG ortholog2880.D8LAS9
KEGG rclassRC00002,RC00017
KEGG koko:K04718,ko:K11502
KEGG ReactionR01926,R02976
KEGG Pathwayko00600,ko01100,ko04020,ko04071,ko04072,ko04370,ko04371,ko04666,ko05152,map00600,map01100,map04020,map04071,map04072,map04370,map04371,map04666,map05152
KEGG ModuleM00100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.D-erythro-sphingosine kinase activity
EggNOG OGsCOG1597@1,KOG1116@2759
EC2.7.1.91
COG Functional cat.I
BiGG ReactioniRC1080.CRv4_Au5_s12_g3675_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929325.6742072-CDS-H-paniculata_contig16727:208..3971622929325.6742072-CDS-H-paniculata_contig16727:208..397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16727 209..397 +
1691480816.7366545-CDS-H-paniculata_contig16727:208..3971691480816.7366545-CDS-H-paniculata_contig16727:208..397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16727 209..397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16727.3796.1prot_H-paniculata_contig16727.3796.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16727 209..397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16727.3796.1

>prot_H-paniculata_contig16727.3796.1 ID=prot_H-paniculata_contig16727.3796.1|Name=mRNA_H-paniculata_contig16727.3796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
SDVDIESEAYRWLGSLRFTVGTVFRIIGLRHYRGRISFLPACLDADGSPA
ASAHSVGQSVKN*
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mRNA from alignment at H-paniculata_contig16727:209..397+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16727.3796.1 ID=mRNA_H-paniculata_contig16727.3796.1|Name=mRNA_H-paniculata_contig16727.3796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at H-paniculata_contig16727:209..397+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGATGTCGACATTGAGTCCGAGGCCTACCGCTGGCTGGGATCGTTGCG GTTTACGGTGGGAACAGTGTTTCGAATAATCGGTCTCCGGCACTACAGGG GACGAATCAGCTTCCTTCCCGCCTGTCTGGACGCGGATGGAAGCCCCGCA GCTTCTGCGCACTCGGTAGGCCAGTCTGTAAAAAACTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig16727:209..397+

>mRNA_H-paniculata_contig16727.3796.1 ID=mRNA_H-paniculata_contig16727.3796.1|Name=mRNA_H-paniculata_contig16727.3796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig16727:209..397+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGATGTCGACATTGAGTCCGAGGCCTACCGCTGGCTGGGATCGTTGCG
GTTTACGGTGGGAACAGTGTTTCGAATAATCGGTCTCCGGCACTACAGGG
GACGAATCAGCTTCCTTCCCGCCTGTCTGGACGCGGATGGAAGCCCCGCA
GCTTCTGCGCACTCGGTAGGCCAGTCTGTAAAAAACTAAAGCGATGTCGA
CATTGAGTCCGAGGCCTACCGCTGGCTGGGATCGTTGCGGTTTACGGTGG
GAACAGTGTTTCGAATAATCGGTCTCCGGCACTACAGGGGACGAATCAGC
TTCCTTCCCGCCTGTCTGGACGCGGATGGAAGCCCCGCAGCTTCTGCGCA
CTCGGTAGGCCAGTCTGTAAAAAACTAA
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