mRNA_H-paniculata_contig1670.3785.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1670.3785.1
Unique NamemRNA_H-paniculata_contig1670.3785.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1670.3785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1670contigH-paniculata_contig1670:689..1915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size499
Cds size498
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1670.3785.1prot_H-paniculata_contig1670.3785.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1670 690..1915 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929324.5691092-CDS-H-paniculata_contig1670:689..9011622929324.5691092-CDS-H-paniculata_contig1670:689..901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1670 690..901 -
1691480816.244865-CDS-H-paniculata_contig1670:689..9011691480816.244865-CDS-H-paniculata_contig1670:689..901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1670 690..901 -
1622929324.5816934-CDS-H-paniculata_contig1670:1406..16621622929324.5816934-CDS-H-paniculata_contig1670:1406..1662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1670 1407..1662 -
1691480816.2541246-CDS-H-paniculata_contig1670:1406..16621691480816.2541246-CDS-H-paniculata_contig1670:1406..1662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1670 1407..1662 -
1622929324.59556-CDS-H-paniculata_contig1670:1885..19151622929324.59556-CDS-H-paniculata_contig1670:1885..1915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1670 1886..1915 -
1691480816.2726853-CDS-H-paniculata_contig1670:1885..19151691480816.2726853-CDS-H-paniculata_contig1670:1885..1915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1670 1886..1915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1670.3785.1

>prot_H-paniculata_contig1670.3785.1 ID=prot_H-paniculata_contig1670.3785.1|Name=mRNA_H-paniculata_contig1670.3785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
VLIQLDVGRGTQEQEPSSLIRATSTEEGNDSSSGGNGGVGSSVVQSSTAP
ISHPVGSVPSSPHNASIPGPAASEVRSIRELSTGTASGATGNDNHDSGEG
ISGNGAVGAIFTTSDLSVSRSAQVAEGSVAYAGGGADGAGGDDGDDGDGG
YGGYGGYGGYHIPAVA
back to top

mRNA from alignment at H-paniculata_contig1670:689..1915-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1670.3785.1 ID=mRNA_H-paniculata_contig1670.3785.1|Name=mRNA_H-paniculata_contig1670.3785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1227bp|location=Sequence derived from alignment at H-paniculata_contig1670:689..1915- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACTGATACAACTTGATGTGGGGCGCGGGGTAAGTGTGTGTTTCATTTT
CGGTAGGGGTACGGAGAGGGTTGAGCAGTGACGGATGAGGTGTGTGACAA
ATGTTTTTCGTTTTATCTGTGGACAATCTAACCGTTGTTTCATTTTGCAA
TGAACGAGTCGAGGTTTTCTTTTTCATCGTTGTCCTATCTCGTAAGTACA
TTTGCATAATCTCGTCGTGTTTCTTATTTTTATTCGTATTTCTGACCGAT
CAGACGCAAGAGCAAGAGCCGAGCTCGTTGATTAGGGCCACGTCGACGGA
GGAAGGCAACGACAGCAGCAGCGGCGGCAACGGCGGCGTCGGCAGCAGCG
TGGTGCAATCCTCCACGGCTCCGATATCGCACCCGGTCGGAAGCGTTCCT
TCTTCCCCGCACAATGCTTCGATTCCAGGCCCTGCGGCTTCCGAGGTCCG
GTCGATTCGAGAACTGAGCACCGGGACGGCGTCTGGTGCCACTGGAAACG
ACAACCACGGTACGTGGGTGTTATTATTGTCGTCGTTGTTGTTGCTATTA
CTGTTGTTGTCGTTGTCGTTGTCGTTGTCGGTGTTGGTGTTGGTGTTGTT
ATTGTTGGTATTGGTATTGGTATTGGTATTGGTATTGGTATTGGTATTGC
TGTTTTTGTTATGCAGTAGTGGTGGTCAGCGGAGACCTGTTGTTTATGAG
TAGAGTGGTACTTCTACTGTTCGTCGTGTATCAGATTTGTCGCTTCAGCG
GATAACCAGGCCCGCACCACCTTGTCATGGTTCCATGGAATGGTCTCGTG
TTTCGAGCAGCTTGCATTTGGTCTTATGTGTGCTCCGACGGTCGGAACAA
TTCGTGTGCACGCCGCTGTAAACATACTCCTCGTCTACGGACATTTCTGT
AGCGTTACAACTAATCTCCCCACTGTATAGTAACAGCACCCTGTGGTCAC
CCCATGACAATGCACCCCTCTATACGTTTGCTCTATTTGGTGTGCTGTGC
TTACTGCCCTACAGACAGCGGCGAAGGGATCAGCGGGAACGGAGCAGTAG
GCGCCATCTTCACGACGTCTGACTTGAGTGTTTCTCGGAGTGCGCAAGTC
GCTGAGGGCTCGGTCGCTTACGCCGGCGGCGGTGCTGATGGTGCTGGTGG
TGATGATGGTGATGATGGTGATGGTGGTTATGGTGGTTATGGTGGTTATG
GTGGCTACCATATTCCTGCGGTCGCAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1670:689..1915-

>mRNA_H-paniculata_contig1670.3785.1 ID=mRNA_H-paniculata_contig1670.3785.1|Name=mRNA_H-paniculata_contig1670.3785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig1670:689..1915- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACTGATACAACTTGATGTGGGGCGCGGGGTACTGATACAACTTGATGT
GGGGCGCGGGACGCAAGAGCAAGAGCCGAGCTCGTTGATTAGGGCCACGT
CGACGGAGGAAGGCAACGACAGCAGCAGCGGCGGCAACGGCGGCGTCGGC
AGCAGCGTGGTGCAATCCTCCACGGCTCCGATATCGCACCCGGTCGGAAG
CGTTCCTTCTTCCCCGCACAATGCTTCGATTCCAGGCCCTGCGGCTTCCG
AGGTCCGGTCGATTCGAGAACTGAGCACCGGGACGGCGTCTGGTGCCACT
GGAAACGACAACCACGACGCAAGAGCAAGAGCCGAGCTCGTTGATTAGGG
CCACGTCGACGGAGGAAGGCAACGACAGCAGCAGCGGCGGCAACGGCGGC
GTCGGCAGCAGCGTGGTGCAATCCTCCACGGCTCCGATATCGCACCCGGT
CGGAAGCGTTCCTTCTTCCCCGCACAATGCTTCGATTCCAGGCCCTGCGG
CTTCCGAGGTCCGGTCGATTCGAGAACTGAGCACCGGGACGGCGTCTGGT
GCCACTGGAAACGACAACCACGACAGCGGCGAAGGGATCAGCGGGAACGG
AGCAGTAGGCGCCATCTTCACGACGTCTGACTTGAGTGTTTCTCGGAGTG
CGCAAGTCGCTGAGGGCTCGGTCGCTTACGCCGGCGGCGGTGCTGATGGT
GCTGGTGGTGATGATGGTGATGATGGTGATGGTGGTTATGGTGGTTATGG
TGGTTATGGTGGCTACCATATTCCTGCGGTCGCAACAGCGGCGAAGGGAT
CAGCGGGAACGGAGCAGTAGGCGCCATCTTCACGACGTCTGACTTGAGTG
TTTCTCGGAGTGCGCAAGTCGCTGAGGGCTCGGTCGCTTACGCCGGCGGC
GGTGCTGATGGTGCTGGTGGTGATGATGGTGATGATGGTGATGGTGGTTA
TGGTGGTTATGGTGGTTATGGTGGCTACCATATTCCTGCGGTCGCA
back to top