mRNA_H-paniculata_contig16677.3770.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16677.3770.1
Unique NamemRNA_H-paniculata_contig16677.3770.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16677.3770.1 vs. uniprot
Match: A0A6H5KE20_9PHAE (Pept_C1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE20_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 4.940e-18
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 KVKNSWGDSWGMDGYILLERANAEESEGGECGLLIEAVYPVLG 129
            KVKNSWGDSWG  GYILLERA++EE EGG+CGLLIEA+YP+LG
Sbjct:  148 KVKNSWGDSWGQGGYILLERADSEEDEGGQCGLLIEAIYPILG 190
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BLAST of mRNA_H-paniculata_contig16677.3770.1 vs. uniprot
Match: D7FIL4_ECTSI (Cathepsin L-like proteinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIL4_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.260e-17
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 KVKNSWGDSWGMDGYILLERANAEESEGGECGLLIEAVYPVLG 129
            KVKNSWGDSWG  GYILLERA++EE EGG+CGLLIEA+YP+LG
Sbjct:  325 KVKNSWGDSWGQGGYILLERADSEEDEGGQCGLLIEAIYPILG 367
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BLAST of mRNA_H-paniculata_contig16677.3770.1 vs. uniprot
Match: A0A835YQ83_9STRA (Cathepsin L-like proteinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ83_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.450e-12
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 KVKNSWGDSWGMDGYILLERANAEES--EGGECGLLIEAVYPVLGKAGDSP 147
            KVKNSWG SWG+DGYILL+R  A  +   GGECG+L++A+YPVL  A D+P
Sbjct:  317 KVKNSWGPSWGLDGYILLQRGAAANAGGSGGECGVLMDAIYPVL--ASDAP 365
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BLAST of mRNA_H-paniculata_contig16677.3770.1 vs. uniprot
Match: A0A7S2GCU1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCU1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.340e-11
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 KVKNSWGDSWGMDGYILLERANAEESEGGECGLLIEAVYPVL 126
            KVKNSWG SWGMDGYIL+ER N++   GG+CG+L+ A YP L
Sbjct:  297 KVKNSWGSSWGMDGYILIERGNSQT--GGQCGILMSASYPTL 336
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BLAST of mRNA_H-paniculata_contig16677.3770.1 vs. uniprot
Match: A0A6C0KLS4_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KLS4_9ZZZZ)

HSP 1 Score: 65.1 bits (157), Expect = 4.910e-11
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 KVKNSWGDSWGMDGYILLERANAEESEGGECGLLIEAVYPVL 126
            KVKNSWG SWG DGYILL R ++  S  G+CG+L+EA YP+L
Sbjct:  301 KVKNSWGTSWGQDGYILLGRGSSYNSGAGQCGVLLEASYPLL 342
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BLAST of mRNA_H-paniculata_contig16677.3770.1 vs. uniprot
Match: A0A2R5GUW4_9STRA (Cysteine proteinase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUW4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.970e-10
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 KVKNSWGDSWGMDGYILLERANAEESEGGECGLLIEAVYPVL 126
            KVKNSWG +WGM+GYIL++R   +   GGECGLL+ A YPVL
Sbjct:  443 KVKNSWGGTWGMNGYILIQRG--KHVRGGECGLLLSASYPVL 482
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BLAST of mRNA_H-paniculata_contig16677.3770.1 vs. uniprot
Match: A0A7S2XZA5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZA5_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-9
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 KVKNSWGDSWGMDGYILLERANAEESEGGECGLLIEAVYPVL 126
            KVKNSWG+SWG +G+ILL + N E+ EGG+CGLL+++ YPVL
Sbjct:  295 KVKNSWGESWGQNGFILLGK-NVEQ-EGGQCGLLLQSSYPVL 334
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BLAST of mRNA_H-paniculata_contig16677.3770.1 vs. uniprot
Match: A0A7S1EV88_NOCSC (Hypothetical protein n=2 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1EV88_NOCSC)

HSP 1 Score: 60.8 bits (146), Expect = 1.610e-9
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 KVKNSWGDSWGMDGYILLERANAEESEGGECGLLIEAVYPVLG 129
            KVKNSWG +WGM+G++LL+R        GECG+L E  YP++G
Sbjct:  295 KVKNSWGATWGMEGFVLLKRGTGLAKTNGECGILKEPTYPIIG 337
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BLAST of mRNA_H-paniculata_contig16677.3770.1 vs. uniprot
Match: A0A6T5MXB9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5MXB9_HETAK)

HSP 1 Score: 60.8 bits (146), Expect = 1.630e-9
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    4 VKNSWGDSWGMDGYILLERANAEESEGGECGLLIEAVYPVL 126
            VKNSWGDSWG DGYI LE+   ++ EGG+CGL ++A YP +
Sbjct:  308 VKNSWGDSWGKDGYIYLEKG--KDQEGGQCGLYLQASYPEM 346
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BLAST of mRNA_H-paniculata_contig16677.3770.1 vs. uniprot
Match: D7FTR7_ECTSI (Cathepsin L-like proteinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTR7_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.730e-9
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 KVKNSWGDSWGMDGYILLERANAEESEGGECGLLIEAVYPVL 126
            KVKNSWG  WG +GYILL+R    + EGGECG+L +A YPVL
Sbjct:  435 KVKNSWGPEWGAEGYILLKRE--ADQEGGECGILEQASYPVL 474
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16677.3770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE20_9PHAE4.940e-1881.40Pept_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FIL4_ECTSI1.260e-1781.40Cathepsin L-like proteinase n=1 Tax=Ectocarpus sil... [more]
A0A835YQ83_9STRA2.450e-1262.75Cathepsin L-like proteinase n=1 Tax=Tribonema minu... [more]
A0A7S2GCU1_9STRA1.340e-1166.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6C0KLS4_9ZZZZ4.910e-1164.29Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A2R5GUW4_9STRA4.970e-1064.29Cysteine proteinase n=1 Tax=Hondaea fermentalgiana... [more]
A0A7S2XZA5_9STRA1.590e-964.29Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1EV88_NOCSC1.610e-953.49Hypothetical protein n=2 Tax=Noctiluca scintillans... [more]
A0A6T5MXB9_HETAK1.630e-960.98Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FTR7_ECTSI1.730e-964.29Cathepsin L-like proteinase n=2 Tax=Ectocarpus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16677contigH-paniculata_contig16677:5256..5411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue4e-14
Seed eggNOG ortholog2880.D7FIL4
KEGG koko:K01365
KEGG Pathwayko04140,ko04142,ko04145,ko04210,ko04612,ko05205,ko05323,ko05418,map04140,map04142,map04145,map04210,map04612,map05205,map05323,map05418
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000323,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0006508,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009653,GO:0009888,GO:0009987,GO:0010015,GO:0010053,GO:0010054,GO:0016020,GO:0016049,GO:0016787,GO:0019538,GO:0021700,GO:0022622,GO:0030154,GO:0030163,GO:0031224,GO:0031225,GO:0032501,GO:0032502,GO:0040007,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044421,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0048364,GO:0048468,GO:0048469,GO:0048588,GO:0048589,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048856,GO:0048869,GO:0051603,GO:0060560,GO:0070011,GO:0071695,GO:0071704,GO:0080147,GO:0090558,GO:0090627,GO:0099402,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1905392
EggNOG free text desc.transferase activity, transferring glycosyl groups
EggNOG OGsCOG4870@1,KOG1543@2759
EC3.4.22.15
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00537,ko01000,ko01002,ko03110
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929322.1704597-CDS-H-paniculata_contig16677:5255..54111622929322.1704597-CDS-H-paniculata_contig16677:5255..5411Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16677 5256..5411 -
1691480815.3327398-CDS-H-paniculata_contig16677:5255..54111691480815.3327398-CDS-H-paniculata_contig16677:5255..5411Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16677 5256..5411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16677.3770.1prot_H-paniculata_contig16677.3770.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16677 5256..5411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16677.3770.1

>prot_H-paniculata_contig16677.3770.1 ID=prot_H-paniculata_contig16677.3770.1|Name=mRNA_H-paniculata_contig16677.3770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
KVKNSWGDSWGMDGYILLERANAEESEGGECGLLIEAVYPVLGKAGDSPA
AD
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mRNA from alignment at H-paniculata_contig16677:5256..5411-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16677.3770.1 ID=mRNA_H-paniculata_contig16677.3770.1|Name=mRNA_H-paniculata_contig16677.3770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig16677:5256..5411- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGTGAAGAATTCCTGGGGAGACTCATGGGGAATGGATGGCTATATCCT
GCTGGAGAGAGCCAACGCTGAGGAGAGCGAGGGCGGAGAGTGCGGCCTGC
TCATCGAGGCGGTGTACCCGGTGCTAGGCAAAGCCGGCGACTCCCCCGCT
GCTGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig16677:5256..5411-

>mRNA_H-paniculata_contig16677.3770.1 ID=mRNA_H-paniculata_contig16677.3770.1|Name=mRNA_H-paniculata_contig16677.3770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig16677:5256..5411- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGTGAAGAATTCCTGGGGAGACTCATGGGGAATGGATGGCTATATCCT
GCTGGAGAGAGCCAACGCTGAGGAGAGCGAGGGCGGAGAGTGCGGCCTGC
TCATCGAGGCGGTGTACCCGGTGCTAGGCAAAGCCGGCGACTCCCCCGCT
GCTGATAAAGTGAAGAATTCCTGGGGAGACTCATGGGGAATGGATGGCTA
TATCCTGCTGGAGAGAGCCAACGCTGAGGAGAGCGAGGGCGGAGAGTGCG
GCCTGCTCATCGAGGCGGTGTACCCGGTGCTAGGCAAAGCCGGCGACTCC
CCCGCTGCTGAT
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