mRNA_H-paniculata_contig16666.3764.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16666.3764.1
Unique NamemRNA_H-paniculata_contig16666.3764.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16666.3764.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 237 bits (604), Expect = 1.530e-78
Identity = 131/135 (97.04%), Postives = 131/135 (97.04%), Query Frame = 1 
Query:    1 ARTKQTARKSTGCKAPRKQLATKAARKSAPATRGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQCLVREIAQDFKTDLRFQDSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 405
            ARTKQTARKSTG KAPRKQLATKAARKSAPAT GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQ LVREIAQDFKTDLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    2 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_H-paniculata_contig16666.3764.1 vs. uniprot
Match: A7RJG4_NEMVE (Predicted protein n=6 Tax=Eumetazoa TaxID=6072 RepID=A7RJG4_NEMVE)

HSP 1 Score: 236 bits (601), Expect = 4.390e-78
Identity = 129/135 (95.56%), Postives = 131/135 (97.04%), Query Frame = 1 
Query:    1 ARTKQTARKSTGCKAPRKQLATKAARKSAPATRGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQCLVREIAQDFKTDLRFQDSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 405
            ARTKQTARKSTG KAPRKQLATKAARKSAPAT GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQ L+REIAQDFKTDLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLIREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
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BLAST of mRNA_H-paniculata_contig16666.3764.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 236 bits (601), Expect = 5.360e-78
Identity = 130/135 (96.30%), Postives = 131/135 (97.04%), Query Frame = 1 
Query:    1 ARTKQTARKSTGCKAPRKQLATKAARKSAPATRGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQCLVREIAQDFKTDLRFQDSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 405
            ARTKQTARKSTG KAPRKQLATKAARKSAPAT GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQ LVREIAQDFKTDLR+Q SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    8 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
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BLAST of mRNA_H-paniculata_contig16666.3764.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 236 bits (601), Expect = 7.000e-78
Identity = 130/135 (96.30%), Postives = 131/135 (97.04%), Query Frame = 1 
Query:    1 ARTKQTARKSTGCKAPRKQLATKAARKSAPATRGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQCLVREIAQDFKTDLRFQDSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 405
            ARTKQTARKSTG KAPRKQLATKAARKSAPAT GVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQ LVREIAQDFKTDLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   16 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
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BLAST of mRNA_H-paniculata_contig16666.3764.1 vs. uniprot
Match: E1ZFV1_CHLVA (Histone H3 n=11 Tax=Eukaryota TaxID=2759 RepID=E1ZFV1_CHLVA)

HSP 1 Score: 235 bits (599), Expect = 8.860e-78
Identity = 129/135 (95.56%), Postives = 131/135 (97.04%), Query Frame = 1 
Query:    1 ARTKQTARKSTGCKAPRKQLATKAARKSAPATRGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQCLVREIAQDFKTDLRFQDSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 405
            ARTKQTARKSTG KAPRKQLATKAARKSAPAT GVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQ LVREIAQDFKTDLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
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BLAST of mRNA_H-paniculata_contig16666.3764.1 vs. uniprot
Match: A0A183C227_GLOPA (Histone H3 n=2 Tax=Tylenchoidea TaxID=33284 RepID=A0A183C227_GLOPA)

HSP 1 Score: 235 bits (599), Expect = 8.860e-78
Identity = 129/135 (95.56%), Postives = 131/135 (97.04%), Query Frame = 1 
Query:    1 ARTKQTARKSTGCKAPRKQLATKAARKSAPATRGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQCLVREIAQDFKTDLRFQDSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 405
            ARTKQTARKSTG KAPRKQLATKAARKSAPAT GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQ LVREIAQDFKTDLRFQ SAVLALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERT 136
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BLAST of mRNA_H-paniculata_contig16666.3764.1 vs. uniprot
Match: A0A7L0ZNQ9_9PASS (Histone H3 (Fragment) n=6 Tax=Bilateria TaxID=33213 RepID=A0A7L0ZNQ9_9PASS)

HSP 1 Score: 234 bits (598), Expect = 1.260e-77
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 1 
Query:    1 ARTKQTARKSTGCKAPRKQLATKAARKSAPATRGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQCLVREIAQDFKTDLRFQDSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 405
            ARTKQTARKSTG KAPRKQLATKAARKSAPAT GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQ LVREIAQDFKTDLRFQ+SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQNSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
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BLAST of mRNA_H-paniculata_contig16666.3764.1 vs. uniprot
Match: H32_HUMAN (Histone H3.2 n=21972 Tax=cellular organisms TaxID=131567 RepID=H32_HUMAN)

HSP 1 Score: 234 bits (597), Expect = 1.790e-77
Identity = 128/135 (94.81%), Postives = 131/135 (97.04%), Query Frame = 1 
Query:    1 ARTKQTARKSTGCKAPRKQLATKAARKSAPATRGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQCLVREIAQDFKTDLRFQDSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 405
            ARTKQTARKSTG KAPRKQLATKAARKSAPAT GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQ LVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
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BLAST of mRNA_H-paniculata_contig16666.3764.1 vs. uniprot
Match: A0A6D2XUG9_PONAB (Histone H3 n=4 Tax=Gnathostomata TaxID=7776 RepID=A0A6D2XUG9_PONAB)

HSP 1 Score: 234 bits (597), Expect = 1.790e-77
Identity = 128/135 (94.81%), Postives = 131/135 (97.04%), Query Frame = 1 
Query:    1 ARTKQTARKSTGCKAPRKQLATKAARKSAPATRGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQCLVREIAQDFKTDLRFQDSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 405
            ARTKQTARKSTG KAPRKQLATKAARKSAPAT GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQ LVREIAQDFKTDLRFQ+SAV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQNSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of mRNA_H-paniculata_contig16666.3764.1 vs. uniprot
Match: H2Y963_CIOSA (Histone H3 n=4 Tax=Chordata TaxID=7711 RepID=H2Y963_CIOSA)

HSP 1 Score: 234 bits (597), Expect = 1.850e-77
Identity = 128/135 (94.81%), Postives = 131/135 (97.04%), Query Frame = 1 
Query:    1 ARTKQTARKSTGCKAPRKQLATKAARKSAPATRGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQCLVREIAQDFKTDLRFQDSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 405
            ARTKQTARKSTG KAPRKQLATKAARKSAPAT GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQ LVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    3 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16666.3764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4GZ05_9STRA1.530e-7897.04Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A7RJG4_NEMVE4.390e-7895.56Predicted protein n=6 Tax=Eumetazoa TaxID=6072 Rep... [more]
A0A6V1P6C6_HETAK5.360e-7896.30Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A7S1BJN3_9STRA7.000e-7896.30Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
E1ZFV1_CHLVA8.860e-7895.56Histone H3 n=11 Tax=Eukaryota TaxID=2759 RepID=E1Z... [more]
A0A183C227_GLOPA8.860e-7895.56Histone H3 n=2 Tax=Tylenchoidea TaxID=33284 RepID=... [more]
A0A7L0ZNQ9_9PASS1.260e-7794.81Histone H3 (Fragment) n=6 Tax=Bilateria TaxID=3321... [more]
H32_HUMAN1.790e-7794.81Histone H3.2 n=21972 Tax=cellular organisms TaxID=... [more]
A0A6D2XUG9_PONAB1.790e-7794.81Histone H3 n=4 Tax=Gnathostomata TaxID=7776 RepID=... [more]
H2Y963_CIOSA1.850e-7794.81Histone H3 n=4 Tax=Chordata TaxID=7711 RepID=H2Y96... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16666contigH-paniculata_contig16666:3885..4292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score243.8
Seed ortholog evalue4.6e-62
Seed eggNOG ortholog112098.XP_008614757.1
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size408
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929321.5360188-CDS-H-paniculata_contig16666:3884..42921622929321.5360188-CDS-H-paniculata_contig16666:3884..4292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16666 3885..4292 +
1691480815.0245707-CDS-H-paniculata_contig16666:3884..42921691480815.0245707-CDS-H-paniculata_contig16666:3884..4292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16666 3885..4292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16666.3764.1prot_H-paniculata_contig16666.3764.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16666 3885..4292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16666.3764.1

>prot_H-paniculata_contig16666.3764.1 ID=prot_H-paniculata_contig16666.3764.1|Name=mRNA_H-paniculata_contig16666.3764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
ARTKQTARKSTGCKAPRKQLATKAARKSAPATRGVKKPHRYRPGTVALRE
IRRYQKSTELLIRKLPFQCLVREIAQDFKTDLRFQDSAVLALQEAAEAYL
VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at H-paniculata_contig16666:3885..4292+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16666.3764.1 ID=mRNA_H-paniculata_contig16666.3764.1|Name=mRNA_H-paniculata_contig16666.3764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=408bp|location=Sequence derived from alignment at H-paniculata_contig16666:3885..4292+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCGTACCAAGCAAACCGCACGCAAGTCTACCGGATGCAAGGCCCCCCG
CAAGCAGCTAGCCACCAAGGCTGCACGCAAGTCCGCGCCAGCTACCCGCG
GTGTGAAGAAGCCGCACCGATACAGGCCGGGCACCGTGGCTTTGCGTGAG
ATCCGGCGCTACCAAAAGTCGACTGAGCTGCTTATTCGCAAGCTGCCGTT
CCAGTGCCTTGTGCGCGAGATCGCACAAGACTTCAAGACCGACCTCCGCT
TTCAAGACTCCGCTGTGCTTGCCCTACAGGAGGCGGCTGAGGCTTACTTG
GTGGGTCTGTTCGAGGACACGAACTTGTGCGCCATCCACGCGAAGCGCGT
GACAATCATGCCTAAGGACATCCAGCTGGCCCGGCGCATCCGCGGCGAAC
GATCATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig16666:3885..4292+

>mRNA_H-paniculata_contig16666.3764.1 ID=mRNA_H-paniculata_contig16666.3764.1|Name=mRNA_H-paniculata_contig16666.3764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig16666:3885..4292+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCGTACCAAGCAAACCGCACGCAAGTCTACCGGATGCAAGGCCCCCCG
CAAGCAGCTAGCCACCAAGGCTGCACGCAAGTCCGCGCCAGCTACCCGCG
GTGTGAAGAAGCCGCACCGATACAGGCCGGGCACCGTGGCTTTGCGTGAG
ATCCGGCGCTACCAAAAGTCGACTGAGCTGCTTATTCGCAAGCTGCCGTT
CCAGTGCCTTGTGCGCGAGATCGCACAAGACTTCAAGACCGACCTCCGCT
TTCAAGACTCCGCTGTGCTTGCCCTACAGGAGGCGGCTGAGGCTTACTTG
GTGGGTCTGTTCGAGGACACGAACTTGTGCGCCATCCACGCGAAGCGCGT
GACAATCATGCCTAAGGACATCCAGCTGGCCCGGCGCATCCGCGGCGAAC
GATCATAAGCTCGTACCAAGCAAACCGCACGCAAGTCTACCGGATGCAAG
GCCCCCCGCAAGCAGCTAGCCACCAAGGCTGCACGCAAGTCCGCGCCAGC
TACCCGCGGTGTGAAGAAGCCGCACCGATACAGGCCGGGCACCGTGGCTT
TGCGTGAGATCCGGCGCTACCAAAAGTCGACTGAGCTGCTTATTCGCAAG
CTGCCGTTCCAGTGCCTTGTGCGCGAGATCGCACAAGACTTCAAGACCGA
CCTCCGCTTTCAAGACTCCGCTGTGCTTGCCCTACAGGAGGCGGCTGAGG
CTTACTTGGTGGGTCTGTTCGAGGACACGAACTTGTGCGCCATCCACGCG
AAGCGCGTGACAATCATGCCTAAGGACATCCAGCTGGCCCGGCGCATCCG
CGGCGAACGATCATAA
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