mRNA_H-paniculata_contig16662.3763.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16662.3763.1
Unique NamemRNA_H-paniculata_contig16662.3763.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16662.3763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16662contigH-paniculata_contig16662:1259..1565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size308
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929321.5073388-CDS-H-paniculata_contig16662:1258..15641622929321.5073388-CDS-H-paniculata_contig16662:1258..1564Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16662 1259..1564 +
1691480815.0149858-CDS-H-paniculata_contig16662:1258..15641691480815.0149858-CDS-H-paniculata_contig16662:1258..1564Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16662 1259..1564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16662.3763.1prot_H-paniculata_contig16662.3763.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16662 1259..1564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16662.3763.1

>prot_H-paniculata_contig16662.3763.1 ID=prot_H-paniculata_contig16662.3763.1|Name=mRNA_H-paniculata_contig16662.3763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
PPACTPTNFRSTYHSTNNENKYLNHVRNLKMVWPSPLPIRTRYPPINIVH
HIVIKTSFISPFEAQGPIILFRSVLYLTTFAIIKAGSSLRSVYSPPCTYL
SI
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mRNA from alignment at H-paniculata_contig16662:1259..1565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16662.3763.1 ID=mRNA_H-paniculata_contig16662.3763.1|Name=mRNA_H-paniculata_contig16662.3763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=307bp|location=Sequence derived from alignment at H-paniculata_contig16662:1259..1565+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACCCGCGTGCACACCCACCAACTTCCGTAGTACATACCACAGCACCAA
CAATGAAAACAAATACCTAAACCACGTACGAAACCTAAAGATGGTATGGC
CGTCTCCACTACCCATAAGGACAAGATATCCTCCAATAAACATCGTTCAT
CATATTGTGATCAAGACTTCCTTCATTTCTCCTTTTGAAGCTCAAGGCCC
AATAATTCTTTTTCGGAGTGTGCTCTACCTCACAACTTTCGCTATAATAA
AAGCGGGATCGAGCTTACGGTCCGTCTACAGTCCCCCTTGTACTTACTTA
TCTATCG
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Coding sequence (CDS) from alignment at H-paniculata_contig16662:1259..1565+

>mRNA_H-paniculata_contig16662.3763.1 ID=mRNA_H-paniculata_contig16662.3763.1|Name=mRNA_H-paniculata_contig16662.3763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig16662:1259..1565+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACCCGCGTGCACACCCACCAACTTCCGTAGTACATACCACAGCACCAA
CAATGAAAACAAATACCTAAACCACGTACGAAACCTAAAGATGGTATGGC
CGTCTCCACTACCCATAAGGACAAGATATCCTCCAATAAACATCGTTCAT
CATATTGTGATCAAGACTTCCTTCATTTCTCCTTTTGAAGCTCAAGGCCC
AATAATTCTTTTTCGGAGTGTGCTCTACCTCACAACTTTCGCTATAATAA
AAGCGGGATCGAGCTTACGGTCCGTCTACAGTCCCCCTTGTACTTACTTA
TCTATCCCACCCGCGTGCACACCCACCAACTTCCGTAGTACATACCACAG
CACCAACAATGAAAACAAATACCTAAACCACGTACGAAACCTAAAGATGG
TATGGCCGTCTCCACTACCCATAAGGACAAGATATCCTCCAATAAACATC
GTTCATCATATTGTGATCAAGACTTCCTTCATTTCTCCTTTTGAAGCTCA
AGGCCCAATAATTCTTTTTCGGAGTGTGCTCTACCTCACAACTTTCGCTA
TAATAAAAGCGGGATCGAGCTTACGGTCCGTCTACAGTCCCCCTTGTACT
TACTTATCTATC
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