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Homology
BLAST of mRNA_H-paniculata_contig16634.3751.1 vs. uniprot
Match: D8LR95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR95_ECTSI) HSP 1 Score: 347 bits (891), Expect = 2.090e-105 Identity = 194/274 (70.80%), Postives = 208/274 (75.91%), Query Frame = 1
Query: 1 ESVAGLAAALEVAERACSPFLRWRPEAHFFRAELLERLGKNDEAREVYRRVLSEATPGLVEGACKLACFERRSGDRRAAAAAYCSLLPPPLG-PNGNDKGSRL------WEETTETTRPYLYMQLARFQHRIAGEPAAARTTFRAAVADIPGSRELWLAFLEFEAAQPQARRSIYSSLALHAGRVEAAFRMAIEEEGSGGGG--------------DNEEARRLTVEDKADLWEWFEEFVEDLSMDVAKVMKMRAEHRAWIRAHSADAHEAAAA 759
ESV GL +ALEVAERACSPFLRWRPEA FF+AELLER+G+ +EAR VY+ VLSE PGLVEGACKLACFERR G+R AA+AAY SLLPPPLG P G WEETTETTRPYLYMQLARFQ R+ G P +AR TFRAAV DIPGSRELWLAFLEFEAAQPQA LHAGRVEAAFRMAI G GGGG D+ +ARRLTVED+ADLWEWFEEFVEDL MDVAKVM +RAEHRAW RAH AHEAAAA
Sbjct: 449 ESVRGLESALEVAERACSPFLRWRPEALFFKAELLERVGRKEEARNVYQHVLSEVAPGLVEGACKLACFERRCGNREAASAAYRSLLPPPLGLPAGXXXXXXXXXXXSHWEETTETTRPYLYMQLARFQQRVLGNPGSARATFRAAVGDIPGSRELWLAFLEFEAAQPQA---------LHAGRVEAAFRMAI---GDGGGGTGAGGAKNTSGEENDDGDARRLTVEDRADLWEWFEEFVEDLCMDVAKVMSVRAEHRAWTRAHGTGAHEAAAA 710
BLAST of mRNA_H-paniculata_contig16634.3751.1 vs. uniprot
Match: A0A7S2V484_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V484_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 8.680e-16 Identity = 74/252 (29.37%), Postives = 106/252 (42.06%), Query Frame = 1
Query: 1 ESVAGLAAALEVAERACSPFLRWRPEAHFFRAELLERLGKNDEAREVYRRVLSEATPGLVEGACKLACFERRSGDRRAAAAAYCSLLPPPL-----GPNGNDKGSRLWEETT------------ETTRPYLYMQLARFQHRIAGEPAAARTTFRAAVADIPGSRELWLAFLEFEAAQPQARRSIYSSLALHAGRVEAAFRMAIEEEGSGGGGDNEEARRLTVEDKADLWEWFEEFVEDLSMDVAKVMKMRAE 705
E+ G + EVA R CS FLR+RP AH F A+LLE G EAR+VY GLVE A + FERR G+ A L L +G +G P++Y+ AR Q +I + AR T+ AV P ++E+WLA L+FE Q + RV+ F E L + + +W+ + E+VED + V ++ ++R E
Sbjct: 68 ETALGAEQSEEVAHRCCSVFLRYRPAAHLFYADLLEAHGHVQEARQVYENASRSVGVGLVELALRWVNFERRQGEAGEKALPIYDQLLEQLKEQQQAVDGKAEGXXXXXXXXXXXXXKDKPAPDSAVLPFVYLHKARLQDKILKDIEGARATYNVAVETYPKNKEIWLALLQFEFGQYDPESTT---------RVKELFEKLTGNESP-----------LAHDQREQVWQTYAEYVEDFGLCVKELRRVRIE 299
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 186.4 |
| Seed ortholog evalue | 2.1e-44 |
| Seed eggNOG ortholog | 2880.D8LR95 |
| KEGG ko | ko:K13217,ko:K20123 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | mRNA 5'-splice site recognition |
| EggNOG OGs | KOG1258@1,KOG1258@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03041,ko04131 |
| Exons | 6 |
| Model size | 1774 |
| Cds size | 972 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16634.3751.1 >prot_H-paniculata_contig16634.3751.1 ID=prot_H-paniculata_contig16634.3751.1|Name=mRNA_H-paniculata_contig16634.3751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=324bp
MQLARFQHRIAGEPAAARTTFRAAVADIPGSRELWLAFLEFEAAQPQARR
SIYSSLALHAGRVEAAFRMAIEEEGSGGGGDNEEARRLTVEDKADLWEWF
EEFVEDLSMDVAKVMKMRAEHRAWIRAHSADAHEAAAAAAAGLGDGSSSK
ADYVTADQRDTTGNGYADAGERTRGQCGGGVRGGGAVTAGTMAVGGGGGG
TAGGGGIYAYAQQARDQWAAAYFHHQQRQGFQQQTGVAAEMQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQYSSAMPMPPHHQQQAFIFQQQYSPQGQPQS
QQQPHHQHHQQHPQKHGHSSWQG* back to topmRNA from alignment at H-paniculata_contig16634:492..5637+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig16634.3751.1 ID=mRNA_H-paniculata_contig16634.3751.1|Name=mRNA_H-paniculata_contig16634.3751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5146bp|location=Sequence derived from alignment at H-paniculata_contig16634:492..5637+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTCGGTCGCCGGGCTCGCGGCAGCGCTTGAGGTAGCTGAGCGAGCTTG
CTCGCCGTTCTTGCGGTGGAGACCAGAGGCACATTTTTTTCGGGCGGAGT
TACTGGAGAGGCTGGGAAAGAATGATGAAGCGAGGGAGGTGTACCGAAGG
GTATTATCAGAGGCAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGCGTGTGTGTTTTAATATTCTCGTGGGTGCTAGGTACTTACGGCGTCT
CCTTAGTAATCAAATTTCGCCGAGTCTCTCCCAGAGTTTCGTGCTCTCAT
GTAATACCAGCTGGTTGATGTGTAGTCGTCAAGAGATTAATGTTTGGATC
CCAAAGTACAGGATACTTCTGTTTTCAAGATCGTTTACCCGTGATTTGGA
GCAGTTGGAAACACAAGCGAGTTCATGGGCGTTGTCAGAGGCGAACTGAT
TCCCGCTATGATTGGAGTTGAGAGTTTAAGGATGTTTTCCGGGTTATTTG
ACCAATTTTAAGATCCAACATGTAAATCTTATAGAAGGCGAGGATCCGAC
ACCCCCCGACCCTATTTTGGGAAGGTCAACGACGGGTGTTTGGGTCTGTG
TTTCAGAATTCAGAACTGCAAGCCCCTCTGCCCTACAGACGATGTCATTT
TCGGGAAAAGAGCCTGGATAAAGAAAGCACTTGGTACGGAGCAACACAGA
GACGTAACAAAGGGAGAAAACCGCTTAAAACCCACTTGAAAAAAATAGAA
TAACACACAATAGGGGTCCCGGCGCAAAGCAAAGGAGCCTATTGCGCGAA
AAAAAAAACGTACTGACGGACATTACTCGGAAAAAAGACTCTGAAGTAAT
GGTAATCCGACGAACGAAAGCTCTAACCATGCCTTCCTTGGTCTATATTT
TCCCATTCAGTGCTTCTCAGATATACCCTGAATTTTCCCCAGTTCGCTTG
TATACGCAGCTCTTCAGCTCCTTACACAGGGGGCGTTCTCGTACGACGTG
AACTCCGTCCTTGCACACACTTCCGCAATCGCTTGTGAATACATCCTTGT
GCATCCTCCTCCACTGCCCTGAGTCTCTTCCTATATCTCATGCAAGATCA
GCGTTCCCTGCTCTAAACTTAAAATCTTCGACTCTCCCTGCATCCTTGCA
TCCGTTGGTGCTTTTAGGTATCAGTCCAACTGTGTCCGTTCATTAGGCTT
TCCACATTCCTTTAGGTCTTTCGTAATTGCAGTTTAGGTCATAGGGGTGG
ACGTTGACGGGGGGGGGGGTTAACAGGAAATATCATCGATGAGTTTTCAT
GCTGACTCTTGTTAGCAGAGTTATCGGAGGAAAAGAACTTGCCGCTGAGA
ATTTTTTGTGGACTTGTCTCACAAAGGTCGCGGGAGCCTGCACTGCGCAG
TCGTTGCATACGAGGCGATTCAGGTTGGAACTGCCGCCATGAATCTCGAC
GCAGCTCGTATGGTAGGATTGATTTATTTATTTGTTCGACACCCCTGCCC
TTCTCTCTTTCTGTTTTAATCAGACTATTGGAAGATCAACTGCTAAATTA
CCACGTAGATTTTCTCTCTATTTCACGCTCCCCCGCCCTCCATTCCCCCG
TCTTTGTGTGTTCACCCGCTGCTTGTCGTTCATTTGCTCTAGGTAGCCCC
AGGTTTGGTAGAGGGCGCTTGCAAGCTGGCATGTTTTGAGCGACGATCTG
GGGATCGTCGAGCCGCGGCCGCCGCTTATTGTTCTCTGCTGCCGCCCCCC
CTGGGGCCCAACGGCAACGATAAAGGATCACGACTGTGGGAAGAAACGAC
AGAGACCACCAGGTAAGGTGTTGTGTGGGCGCTTGCTGTCTACAGGTACA
CGCATTTACAGCAACAGGAACAGTTACACGGGTAGGTTGAACTGTTGCGG
AAAACGAGAGAAGTTGTTGTTGCTTTGTGTCGTGGTGGTGGTGGTGGTGT
TGGTGGTGGGTCTCACGCGAGTTGGATAATGCGTGTTTTTTGCTTGAGTT
CATTTGGGGACTACTTGTAATTCAGCTAAGTATGCTGTACTCCGTTGATG
ATTTCAGTGGCAAACGAGTAGCATTGTTACCCATTATGATTGCGATCCTC
CCCCCCCCCCCGCCGCGTACGCACATATTTGGTTTTGATATTGCAGTTGA
CTAGGGTCATTATAGAGTTGATCACCATTTCAACGAATGTTTTCTCATTA
GATTCTACGCTATTGTTTGTTTTTAATCGTTACTGATGACGACTGCCAAA
CCGTTGGTGCTATCGCCGCCACCCTCGACCGCCAGGCCTTATCTCTATAT
GCAGCTCGCCAGGTTTCAACATCGCATCGCAGGAGAGCCTGCCGCTGCCC
GCACAACATTTCGTGCCGCAGTTGCAGATATTCCCGGTAGCCGCGAGCTG
TGGCTGGCGTTTTTGGAATTCGAGGCTGCACAGCCCCAGGCGAGACGGTC
AATTTACAGTAGCCTCGTAGGTTGACAGACTCTTGGCTGCACACAATTGG
TCTATATCCCGTTATTACGCTGACAGTGTGCTTGTAGGTGTGACGCACTG
TTAGTATTTTCGGATATTCCCTTTAGCAGTATTTTATGTCAGCACAGGTA
AATACTGTGTGCCACCTATTTGGCATTCCGACGTGCAGACAAGGCACCAA
ATGTGAGCCGAAACTCCCTTGCTCCCCACCTTTCGCCTCCCCCGTCATGC
CAACATGATCCAGGCCTTGCATGCCGGAAGAGTAGAAGCGGCATTTAGAA
TGGCAATAGAGGAAGAAGGAAGCGGTGGCGGCGGCGATAACGAAGAGGCT
CGACGATTAACTGTGGAAGACAAGGCAGATTTGTGGGAGTGGTTTGAGGA
GTTTGTGGAGGACTTGTCAATGGACGTGGCCAAGGTCAGTTTTTTGCGTC
CATCGAGTTTTTTTTTCTTGTCTCCTGTTTGGATTTCAGCATGGAGCATG
ATACAGTGCATGCAGCGGGCGTTGATCACATTGTCCATGGCCCAACCTTC
TTGCCAACCAGTGCTCCTTTTTTGCTTTCATTGAAACTCCTCTCCAGTAA
CCCCAATAAAATCGCGCACTAGCCATGCCACACATGCAAACAACTATGAC
GAGAACACTTTCTAACCTAGATTCCCATATTCACATGTAGTAACTATCCC
ACACTGTCTTGTGCAAGCAACCTTGCCGCCTCACACGCAATTCCCTGTTT
CATCGGCACTCCACAACGTGATTTACCATCTGAAAAAAACAGGTTATGAA
AATGCGAGCAGAACACAGGGCGTGGATTCGAGCCCACAGCGCCGATGCTC
ATGAAGCAGCGGCTGCAGCCGCAGCGGGACTTGGCGACGGCAGCAGCAGC
AAAGCGGATTACGTCACAGCAGATCAACGAGATACCACCGGAAACGGCTA
CGCGGACGCGGGAGAGCGCACGAGAGGGCAATGTGGCGGCGGTGTGAGAG
GCGGGGGGGCGGTGACGGCGGGAACAATGGCAGTTGGAGGCGGGGGGGGA
GGGACGGCGGGGGGTGGGGGTATATATGCGTATGCGCAGCAGGCTCGGGA
TCAGTGGGCCGCTGCGTATTTCCATCATCAGCAACGACAGGTAATGTTAC
GATCGTGTTATAAATAGGTGTTTGTAATGATACAGGTATGCGGGTGGGAA
GTCGAAATTTCGAACCATCCACATATCAGATTGATGATCTATGCCTTGCG
AGCCGGCTTGTACGAATCAGTGACGTGCAAATATGTACTGATCGTTCTGG
CCGTGCGGACCAGTCGTAGGGCATCAACTACGGGTAAATATAAACGGATC
AAAAGCAGGGCAGATGATTCGTACGAGCTGTCAATTAAGTGCTCGATCCG
ACGTGCGGAGCCATCCCAAGGTAGCGCCCGATTTGGTCAATCTACGATAA
TTGATACGGTTCCTCCTGCAGGGAAAATCCCAGATGCTTGACGCGTCAGG
GGTTGACGCGCGCGAGTGGGCGTCACGAAGTGGAACGTAAAAATGCAAAA
TACTGCAAGAGGCAACCTCTGACTTTTGCAGCATTGCAAAATCACTCCGT
GTAGTCGGTTTGGCGGATCACTCAAATATTTGACACGAGGCGTTTTACCC
TTCTGTCACCTGTTGTGTTGCACGTTTTAACATGTAGTTTAGAACCCTGT
TGGAGCACTATTGATCTGTCACTCATGTGAAGGTTGCGTATTTGGTTAAA
AATTGTTTACTCTAGTGCAACTATTTCATTTCTACTCTTATGAAATATAA
TTACAATAGAGTAGGACACACTTTTTGACAGCGATATCAGAGCCACGAAC
CCATTTGACTGGCTTTTGTTATTTTGCCGTGCTGTCGTCAAACCGAACGC
GTATACTTGTGTGTCGCCAATCACGCTATTGTGTTGCGGTTCCCTTCTTT
TCAGGGGTTTCAGCAGCAAACAGGGGTTGCAGCGGAAATGCAACAGCAAC
AGCAACAGCAACAGCAACAACAGCAGCAACAACAGCAGCAACAACAGCAG
CAACAACAGCAGCAACAACAGCAGCAGTACAGCTCTGCTATGCCGATGCC
CCCTCACCACCAGCAACAGGCGTTTATTTTCCAACAGCAGTATTCGCCAC
AAGGCCAACCACAGTCTCAACAGCAGCCCCATCATCAGCATCATCAGCAA
CATCCCCAAAAGCATGGACATAGTAGCTGGCAAGGGTGACCACATGCCTG
GGGTTGTGGAGGTCTGGAGCAAATAGGGTGCTGCTACGCCACGCAGACAA
AATACAGAGGGTGCGATTGCCCGTACAATACTCAGATCTAGGAGTCTTTT
CCGTCCAGGAAAGCTCCACGACGAAGGTTGTAGAGGGGTCTTCGCATATG
TTTGCGTCAAACGATTGGACAGAGGCCTTGGCATACGCGCGGATTCAAAG
ATTAGAGAAATAGTCTTAGCATGTGCTCCCAATTTCCATGTGTGTATACT
CCCACTGTGCAAAGATTTTAGGGGATCAGTCATATGACTTTTGAACAAAG
TATTCCATCGAGAAACGGTTCTTTGTGTTGGGGTTTTTGGTATTTTTTGG
ACTCGACTCAACCCTCCTGATTAGATCCCTTCTATTCCTTCCCGTCGTGT
CACTCGTTAGTTAAATCTGCCTAACAAAGATGCCAAATAATTCTTC back to topCoding sequence (CDS) from alignment at H-paniculata_contig16634:492..5637+ >mRNA_H-paniculata_contig16634.3751.1 ID=mRNA_H-paniculata_contig16634.3751.1|Name=mRNA_H-paniculata_contig16634.3751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1944bp|location=Sequence derived from alignment at H-paniculata_contig16634:492..5637+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCTCGCCAGGTTTCAACATCGCATCGCAGGAGAGCCTGCCGCTGC
CCGCACAACATTTCGTGCCGCAGTTGCAGATATTCCCGGTAGCCGCGAGC
TGTGGCTGGCGTTTTTGGAATTCGAGGCTGCACAGCCCCAGGCGAGACGG
TCAATTTACAGTAGCCTCATGCAGCTCGCCAGGTTTCAACATCGCATCGC
AGGAGAGCCTGCCGCTGCCCGCACAACATTTCGTGCCGCAGTTGCAGATA
TTCCCGGTAGCCGCGAGCTGTGGCTGGCGTTTTTGGAATTCGAGGCTGCA
CAGCCCCAGGCGAGACGGTCAATTTACAGTAGCCTCGCCTTGCATGCCGG
AAGAGTAGAAGCGGCATTTAGAATGGCAATAGAGGAAGAAGGAAGCGGTG
GCGGCGGCGATAACGAAGAGGCTCGACGATTAACTGTGGAAGACAAGGCA
GATTTGTGGGAGTGGTTTGAGGAGTTTGTGGAGGACTTGTCAATGGACGT
GGCCAAGGCCTTGCATGCCGGAAGAGTAGAAGCGGCATTTAGAATGGCAA
TAGAGGAAGAAGGAAGCGGTGGCGGCGGCGATAACGAAGAGGCTCGACGA
TTAACTGTGGAAGACAAGGCAGATTTGTGGGAGTGGTTTGAGGAGTTTGT
GGAGGACTTGTCAATGGACGTGGCCAAGGTTATGAAAATGCGAGCAGAAC
ACAGGGCGTGGATTCGAGCCCACAGCGCCGATGCTCATGAAGCAGCGGCT
GCAGCCGCAGCGGGACTTGGCGACGGCAGCAGCAGCAAAGCGGATTACGT
CACAGCAGATCAACGAGATACCACCGGAAACGGCTACGCGGACGCGGGAG
AGCGCACGAGAGGGCAATGTGGCGGCGGTGTGAGAGGCGGGGGGGCGGTG
ACGGCGGGAACAATGGCAGTTGGAGGCGGGGGGGGAGGGACGGCGGGGGG
TGGGGGTATATATGCGTATGCGCAGCAGGCTCGGGATCAGTGGGCCGCTG
CGTATTTCCATCATCAGCAACGACAGGTTATGAAAATGCGAGCAGAACAC
AGGGCGTGGATTCGAGCCCACAGCGCCGATGCTCATGAAGCAGCGGCTGC
AGCCGCAGCGGGACTTGGCGACGGCAGCAGCAGCAAAGCGGATTACGTCA
CAGCAGATCAACGAGATACCACCGGAAACGGCTACGCGGACGCGGGAGAG
CGCACGAGAGGGCAATGTGGCGGCGGTGTGAGAGGCGGGGGGGCGGTGAC
GGCGGGAACAATGGCAGTTGGAGGCGGGGGGGGAGGGACGGCGGGGGGTG
GGGGTATATATGCGTATGCGCAGCAGGCTCGGGATCAGTGGGCCGCTGCG
TATTTCCATCATCAGCAACGACAGGGGTTTCAGCAGCAAACAGGGGTTGC
AGCGGAAATGCAACAGCAACAGCAACAGCAACAGCAACAACAGCAGCAAC
AACAGCAGCAACAACAGCAGCAACAACAGCAGCAACAACAGCAGCAGTAC
AGCTCTGCTATGCCGATGCCCCCTCACCACCAGCAACAGGCGTTTATTTT
CCAACAGCAGTATTCGCCACAAGGCCAACCACAGTCTCAACAGCAGCCCC
ATCATCAGCATCATCAGCAACATCCCCAAAAGCATGGACATAGTAGCTGG
CAAGGGTGAGGGTTTCAGCAGCAAACAGGGGTTGCAGCGGAAATGCAACA
GCAACAGCAACAGCAACAGCAACAACAGCAGCAACAACAGCAGCAACAAC
AGCAGCAACAACAGCAGCAACAACAGCAGCAGTACAGCTCTGCTATGCCG
ATGCCCCCTCACCACCAGCAACAGGCGTTTATTTTCCAACAGCAGTATTC
GCCACAAGGCCAACCACAGTCTCAACAGCAGCCCCATCATCAGCATCATC
AGCAACATCCCCAAAAGCATGGACATAGTAGCTGGCAAGGGTGA back to top
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