mRNA_H-paniculata_contig16600.3744.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16600.3744.1
Unique NamemRNA_H-paniculata_contig16600.3744.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16600.3744.1 vs. uniprot
Match: K0QZK3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZK3_THAOC)

HSP 1 Score: 61.2 bits (147), Expect = 9.330e-10
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 VALEVFGPPFMRSINVAIALLFGYFVAAVSEKDGLDYVVTDKIEA 135
            V LE FG PFM++ NV IALLFGYF+A VS  +GLDYV  DKI A
Sbjct:  295 VFLEFFGSPFMKNANVIIALLFGYFIAGVSNYEGLDYVNNDKIAA 339
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BLAST of mRNA_H-paniculata_contig16600.3744.1 vs. uniprot
Match: D8LM51_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM51_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 3.400e-9
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   31 MRSINVAIALLFGYFVAAVSEKDGLDYVVTDKIEA 135
            MRSINV +ALLFGYFVAAVSE +G DYVV+DKI+A
Sbjct:    1 MRSINVVVALLFGYFVAAVSENNGNDYVVSDKIDA 35
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BLAST of mRNA_H-paniculata_contig16600.3744.1 vs. uniprot
Match: A8IB05_CHLRE (Predicted protein n=6 Tax=Chlamydomonas TaxID=3052 RepID=A8IB05_CHLRE)

HSP 1 Score: 57.4 bits (137), Expect = 2.130e-8
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 VALEVFGPPFMRSINVAIALLFGYFVAAVSEKDGLDYVVTDKIE 132
            + LE+FG PFMR+ +V +ALLFGYF+AAV+   G  YV+T KI+
Sbjct:  308 IVLEIFGSPFMRNASVILALLFGYFIAAVTNYQGKKYVITTKID 351
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BLAST of mRNA_H-paniculata_contig16600.3744.1 vs. uniprot
Match: A0A836C6R5_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C6R5_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 7.450e-8
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    7 LEVFGPPFMRSINVAIALLFGYFVAAVSEKDGLDYVVTDKIEA 135
            LE+FG PFMR+ +V IALLFGYF+AAV+  DG  YV T  I++
Sbjct:  279 LEIFGSPFMRNASVIIALLFGYFIAAVTNYDGNKYVTTGLIDS 321
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BLAST of mRNA_H-paniculata_contig16600.3744.1 vs. uniprot
Match: A0A1Z5KLZ2_FISSO (Nucleobase:cation symporter-2, NCS2 family n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLZ2_FISSO)

HSP 1 Score: 55.8 bits (133), Expect = 7.450e-8
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 VALEVFGPPFMRSINVAIALLFGYFVAAVSEKDGLDYVVTDKI 129
            V +E+FG  FM++ NV IAL+FGYF+AAVS+ +GL YV  DKI
Sbjct:  271 VFIELFGSVFMKNCNVFIALMFGYFIAAVSDYNGLQYVTKDKI 313
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BLAST of mRNA_H-paniculata_contig16600.3744.1 vs. uniprot
Match: A0A7S2K7D7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K7D7_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 9.110e-7
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 VALEVFGPPFMRSINVAIALLFGYFVAAVSEKDGLDYVVTDKIE 132
            V +E+FG  FM++ NV +ALLFGYFVA VS+  G  YV  D+IE
Sbjct:  232 VVIELFGSTFMKNCNVILALLFGYFVAGVSDYQGDSYVNNDRIE 275
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BLAST of mRNA_H-paniculata_contig16600.3744.1 vs. uniprot
Match: L1IT79_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IT79_GUITC)

HSP 1 Score: 47.8 bits (112), Expect = 5.370e-5
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 VALEVFGPPFMRSINVAIALLFGYFVAAVS--EKDGLD--YVVTDKIEA 135
            + +EVFG PF+R+  VAIALLFG+F++AV+    DG    +VV DKI +
Sbjct:  230 IMIEVFGSPFLRNCEVAIALLFGFFISAVATYNNDGTKEWFVVNDKISS 278
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16600.3744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
K0QZK3_THAOC9.330e-1066.67Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
D8LM51_ECTSI3.400e-980.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A8IB05_CHLRE2.130e-856.82Predicted protein n=6 Tax=Chlamydomonas TaxID=3052... [more]
A0A836C6R5_9CHLO7.450e-860.47Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A1Z5KLZ2_FISSO7.450e-860.47Nucleobase:cation symporter-2, NCS2 family n=2 Tax... [more]
A0A7S2K7D7_9STRA9.110e-756.82Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
L1IT79_GUITC5.370e-551.02Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16600contigH-paniculata_contig16600:5379..5513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size135
Cds size105
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929318.9654112-CDS-H-paniculata_contig16600:5378..54831622929318.9654112-CDS-H-paniculata_contig16600:5378..5483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16600 5379..5483 -
1691480813.8366966-CDS-H-paniculata_contig16600:5378..54831691480813.8366966-CDS-H-paniculata_contig16600:5378..5483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16600 5379..5483 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929318.9802463-UTR-H-paniculata_contig16600:5483..55131622929318.9802463-UTR-H-paniculata_contig16600:5483..5513Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16600 5484..5513 -
1691480813.84492-UTR-H-paniculata_contig16600:5483..55131691480813.84492-UTR-H-paniculata_contig16600:5483..5513Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16600 5484..5513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16600.3744.1prot_H-paniculata_contig16600.3744.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16600 5379..5483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16600.3744.1

>prot_H-paniculata_contig16600.3744.1 ID=prot_H-paniculata_contig16600.3744.1|Name=mRNA_H-paniculata_contig16600.3744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=35bp
MRSINVAIALLFGYFVAAVSEKDGLDYVVTDKIEA
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mRNA from alignment at H-paniculata_contig16600:5379..5513-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16600.3744.1 ID=mRNA_H-paniculata_contig16600.3744.1|Name=mRNA_H-paniculata_contig16600.3744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at H-paniculata_contig16600:5379..5513- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCTCTCGAGGTGTTCGGGCCTCCCTTCATGCGCAGCATCAATGTAGC
CATCGCCCTTCTGTTCGGCTACTTCGTCGCTGCCGTCTCTGAGAAGGACG
GTCTAGACTACGTTGTGACGGACAAGATTGAGGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig16600:5379..5513-

>mRNA_H-paniculata_contig16600.3744.1 ID=mRNA_H-paniculata_contig16600.3744.1|Name=mRNA_H-paniculata_contig16600.3744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=210bp|location=Sequence derived from alignment at H-paniculata_contig16600:5379..5513- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCAGCATCAATGTAGCCATCGCCCTTCTGTTCGGCTACTTCGTCGC
TGCCGTCTCTGAGAAGGACGGTCTAGACTACGTTGTGACGGACAAGATTG
AGGCTATGCGCAGCATCAATGTAGCCATCGCCCTTCTGTTCGGCTACTTC
GTCGCTGCCGTCTCTGAGAAGGACGGTCTAGACTACGTTGTGACGGACAA
GATTGAGGCT
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