mRNA_H-paniculata_contig16592.3738.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16592.3738.1
Unique NamemRNA_H-paniculata_contig16592.3738.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16592.3738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16592contigH-paniculata_contig16592:4822..5748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size218
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929317.5261853-CDS-H-paniculata_contig16592:4822..48871622929317.5261853-CDS-H-paniculata_contig16592:4822..4887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16592 4823..4887 -
1691480813.310316-CDS-H-paniculata_contig16592:4822..48871691480813.310316-CDS-H-paniculata_contig16592:4822..4887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16592 4823..4887 -
1622929317.5409157-CDS-H-paniculata_contig16592:5597..57481622929317.5409157-CDS-H-paniculata_contig16592:5597..5748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16592 5598..5748 -
1691480813.3280432-CDS-H-paniculata_contig16592:5597..57481691480813.3280432-CDS-H-paniculata_contig16592:5597..5748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16592 5598..5748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16592.3738.1prot_H-paniculata_contig16592.3738.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16592 4823..5748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16592.3738.1

>prot_H-paniculata_contig16592.3738.1 ID=prot_H-paniculata_contig16592.3738.1|Name=mRNA_H-paniculata_contig16592.3738.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
EGVRLPGDRCSGVPCLACTPSFRRSRVGRARCTDRVLLRHCVPHRRLYRR
VLTGTGHPQISPRQVHPVRRHI
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mRNA from alignment at H-paniculata_contig16592:4822..5748-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16592.3738.1 ID=mRNA_H-paniculata_contig16592.3738.1|Name=mRNA_H-paniculata_contig16592.3738.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=927bp|location=Sequence derived from alignment at H-paniculata_contig16592:4822..5748- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGGCGTTAGGCTCCCAGGCGATCGATGTAGCGGCGTACCGTGCTTGGC
CTGCACTCCATCCTTTCGTCGCAGCCGTGTGGGCCGAGCTCGGTGTACAG
ACCGGGTGCTACTCCGACATTGCGTTCCGCACCGGCGATTGTACAGACGA
GGTGTGCATTGCGGTCATACCAAATTGACATTGCGTAATCAGTCATTTAG
GGGGCTGGCTGCCGATGGACAACATCGGAAATCGTTTGGAATACTGAGCG
TTGGCTCCCTATGACGAACGTAAAACATAACGGCCAGTTGGAAACGTATA
TATATAGCTGCTGGGACCTTGCTGCTAATTATATGAGTCGAAGAAGTGAT
CGTGGTTCTGGTTTCGCGCCTGTCCATGTTTTTTTACCTATTTGTTCGTC
GTGCATAAAACAAATATTTTACACCAGACCGTATATATTGCAGAATTATT
TCGTGCTCGATCACCCAAACTTGGAACAAATAAACACGATTTTGACCTGT
TGATCAAGAAACAGGAACTAGTAAATAGGAATGGAAATGTATATATAGCT
GCTGGGACCTTGCTGCTAATTACATGAGTCGTGGAAGCTACAACGGTTCT
GGTTTCGTGCCTGTCCTGTTTTTTCATCTGGTTGTTCGCCGTGCATACAA
AAAATATTTTACACCAGACCGCACATATTGCAAAATTATTTCGTGCTCGA
TCACTTAAACTTGGAAAAGATGAACACGGTTTTGACCTGTCGATAAAAAA
CAGGGAATAGTGAATAGTTGTGCGTTCCGCGTCCTGAATTGATTTACTCG
CCCTGGTTGCTCCGAATTAAATCCTTGATTTCTCCTACTGCCCGTGTTTC
CATTCTCGCAGTGCTCACCGGAACGGGGCATCCACAAATATCTCCGCGAC
AAGTACATCCCGTTCGAAGACACATTG
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Coding sequence (CDS) from alignment at H-paniculata_contig16592:4822..5748-

>mRNA_H-paniculata_contig16592.3738.1 ID=mRNA_H-paniculata_contig16592.3738.1|Name=mRNA_H-paniculata_contig16592.3738.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig16592:4822..5748- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGGCGTTAGGCTCCCAGGCGATCGATGTAGCGGCGTACCGTGCTTGGC
CTGCACTCCATCCTTTCGTCGCAGCCGTGTGGGCCGAGCTCGGTGTACAG
ACCGGGTGCTACTCCGACATTGCGTTCCGCACCGGCGATTGTACAGACGA
GGAGGGCGTTAGGCTCCCAGGCGATCGATGTAGCGGCGTACCGTGCTTGG
CCTGCACTCCATCCTTTCGTCGCAGCCGTGTGGGCCGAGCTCGGTGTACA
GACCGGGTGCTACTCCGACATTGCGTTCCGCACCGGCGATTGTACAGACG
AGTGCTCACCGGAACGGGGCATCCACAAATATCTCCGCGACAAGTACATC
CCGTTCGAAGACACATTTGCTCACCGGAACGGGGCATCCACAAATATCTC
CGCGACAAGTACATCCCGTTCGAAGACACATT
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