mRNA_H-paniculata_contig16588.3735.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16588.3735.1
Unique NamemRNA_H-paniculata_contig16588.3735.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig16588.3735.1 vs. uniprot
Match: A0A6H5JZY6_9PHAE (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 5.560e-27
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    7 GGNSGA-PIGRRIRAVSLIKGVDNGPEGLTLISDKIREGLHGAVPVSVLMGANVANEVARDELCESTV 207
            GGN+GA P GRRIRAVSLIKGVD GP+GL LISD IREGL GAVPVSVLMGANVANEVARDELCEST+
Sbjct:  149 GGNAGAAPGGRRIRAVSLIKGVDKGPDGLKLISDHIREGLCGAVPVSVLMGANVANEVARDELCESTL 216
[Close]
BLAST of mRNA_H-paniculata_contig16588.3735.1 vs. uniprot
Match: GPD1L_DANRE (Glycerol-3-phosphate dehydrogenase 1-like protein n=17 Tax=Teleostei TaxID=32443 RepID=GPD1L_DANRE)

HSP 1 Score: 73.9 bits (180), Expect = 6.740e-14
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   28 IGRRIRAVSLIKGVDNGPEGLTLISDKIREGLHGAVPVSVLMGANVANEVARDELCESTV 207
            +  R R ++LIKG+D GPEGL LISD IRE +   + VSVLMGAN+ANEVA ++ CEST+
Sbjct:  110 VSERARGITLIKGIDEGPEGLKLISDIIREKM--GIDVSVLMGANIANEVAAEKFCESTI 167
[Close]
BLAST of mRNA_H-paniculata_contig16588.3735.1 vs. uniprot
Match: A0A8C1D307_CYPCA (Glycerol-3-phosphate dehydrogenase 1 like n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1D307_CYPCA)

HSP 1 Score: 72.0 bits (175), Expect = 9.640e-14
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   28 IGRRIRAVSLIKGVDNGPEGLTLISDKIREGLHGAVPVSVLMGANVANEVARDELCESTV 207
            +  + R ++LIKG+D GPEG+ LISD IRE +   + VSVLMGAN+ANEVA ++ CEST+
Sbjct:  110 VSEKARGITLIKGIDEGPEGMKLISDIIREKM--GIDVSVLMGANIANEVAAEKFCESTI 167
[Close]
BLAST of mRNA_H-paniculata_contig16588.3735.1 vs. uniprot
Match: W5M2H7_LEPOC (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Tax=Lepisosteidae TaxID=7915 RepID=W5M2H7_LEPOC)

HSP 1 Score: 73.2 bits (178), Expect = 1.280e-13
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:   28 IGRRIRAVSLIKGVDNGPEGLTLISDKIREGLHGAVPVSVLMGANVANEVARDELCESTV 207
            + ++ R +SLIKG+D GPEGL LISD IRE +   + VSVLMGAN+ANEVA ++ CE+T+
Sbjct:  110 VSQKARGISLIKGIDEGPEGLKLISDIIREKM--GIDVSVLMGANIANEVAAEKFCETTI 167
[Close]
BLAST of mRNA_H-paniculata_contig16588.3735.1 vs. uniprot
Match: A0A8C4SNB9_ERPCA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=3 Tax=Polypteridae TaxID=8289 RepID=A0A8C4SNB9_ERPCA)

HSP 1 Score: 73.2 bits (178), Expect = 1.310e-13
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   28 IGRRIRAVSLIKGVDNGPEGLTLISDKIREGLHGAVPVSVLMGANVANEVARDELCESTV 207
            + RR   +SLIKG+D GPEGL LISD IRE +   + VSVLMGAN+ANEVA ++ CE+T+
Sbjct:  114 VSRRALGISLIKGIDEGPEGLKLISDIIREKM--GIDVSVLMGANIANEVAAEKFCETTI 171
[Close]
BLAST of mRNA_H-paniculata_contig16588.3735.1 vs. uniprot
Match: A0A3B3SXD1_9TELE (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Tax=Osteoglossocephalai TaxID=1489341 RepID=A0A3B3SXD1_9TELE)

HSP 1 Score: 72.8 bits (177), Expect = 1.770e-13
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:   28 IGRRIRAVSLIKGVDNGPEGLTLISDKIREGLHGAVPVSVLMGANVANEVARDELCESTV 207
            + R  R ++LIKG+D GPEGL LISD IRE +  ++ VSVLMGAN+ANEVA ++ CE+T+
Sbjct:  110 VSRTARGITLIKGIDEGPEGLRLISDIIREKM--SIDVSVLMGANIANEVAAEKFCETTI 167
[Close]
BLAST of mRNA_H-paniculata_contig16588.3735.1 vs. uniprot
Match: UPI0018FFF67C (glycerol-3-phosphate dehydrogenase 1-like protein isoform X2 n=2 Tax=Teleostei TaxID=32443 RepID=UPI0018FFF67C)

HSP 1 Score: 72.4 bits (176), Expect = 2.050e-13
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:   28 IGRRIRAVSLIKGVDNGPEGLTLISDKIREGLHGAVPVSVLMGANVANEVARDELCESTV 207
            +  + R ++LIKG+D GPEGL LISD IRE +  A+ VSVLMGAN+ANEVA ++ CE+T+
Sbjct:  110 VSSQARGITLIKGIDEGPEGLKLISDIIREKM--AIDVSVLMGANIANEVAAEKFCETTI 167
[Close]
BLAST of mRNA_H-paniculata_contig16588.3735.1 vs. uniprot
Match: A0A8C1CIE9_CYPCA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1CIE9_CYPCA)

HSP 1 Score: 72.0 bits (175), Expect = 2.390e-13
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   28 IGRRIRAVSLIKGVDNGPEGLTLISDKIREGLHGAVPVSVLMGANVANEVARDELCESTV 207
            +  + R ++LIKG+D GPEGL LISD IRE +   + VSVLMGAN+ANEVA ++ CEST+
Sbjct:   91 VSDKARGITLIKGIDEGPEGLKLISDIIREKM--GIDVSVLMGANIANEVAAEKFCESTI 148
[Close]
BLAST of mRNA_H-paniculata_contig16588.3735.1 vs. uniprot
Match: A0A3Q0TAH3_AMPCI (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=10 Tax=Euteleosteomorpha TaxID=1489388 RepID=A0A3Q0TAH3_AMPCI)

HSP 1 Score: 72.4 bits (176), Expect = 2.420e-13
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:   49 VSLIKGVDNGPEGLTLISDKIREGLHGAVPVSVLMGANVANEVARDELCESTV 207
            +SLIKGVD GPEGLTLISD IRE L   + VSVLMGAN+ANEVA ++ CE+T+
Sbjct:  116 ISLIKGVDEGPEGLTLISDIIREKLQ--IEVSVLMGANIANEVADEKFCETTI 166
[Close]
BLAST of mRNA_H-paniculata_contig16588.3735.1 vs. uniprot
Match: A0A672LR38_SINGR (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=36 Tax=Clupeocephala TaxID=186625 RepID=A0A672LR38_SINGR)

HSP 1 Score: 72.4 bits (176), Expect = 2.440e-13
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   28 IGRRIRAVSLIKGVDNGPEGLTLISDKIREGLHGAVPVSVLMGANVANEVARDELCESTV 207
            +  + R ++LIKG+D GPEGL LISD IRE +   + +SVLMGAN+ANEVA ++ CEST+
Sbjct:  110 VSEKARGITLIKGIDEGPEGLKLISDIIREKM--GIDISVLMGANIANEVAAEKFCESTI 167
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16588.3735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZY6_9PHAE5.560e-2786.76Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
GPD1L_DANRE6.740e-1460.00Glycerol-3-phosphate dehydrogenase 1-like protein ... [more]
A0A8C1D307_CYPCA9.640e-1456.67Glycerol-3-phosphate dehydrogenase 1 like n=2 Tax=... [more]
W5M2H7_LEPOC1.280e-1358.33Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Ta... [more]
A0A8C4SNB9_ERPCA1.310e-1360.00Glycerol-3-phosphate dehydrogenase [NAD(+)] n=3 Ta... [more]
A0A3B3SXD1_9TELE1.770e-1358.33Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Ta... [more]
UPI0018FFF67C2.050e-1358.33glycerol-3-phosphate dehydrogenase 1-like protein ... [more]
A0A8C1CIE9_CYPCA2.390e-1358.33Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A3Q0TAH3_AMPCI2.420e-1369.81Glycerol-3-phosphate dehydrogenase [NAD(+)] n=10 T... [more]
A0A672LR38_SINGR2.440e-1356.67Glycerol-3-phosphate dehydrogenase [NAD(+)] n=36 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16588contigH-paniculata_contig16588:3074..3791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score73.9
Seed ortholog evalue3.2e-11
Seed eggNOG ortholog7955.ENSDARP00000123149
Preferred nameGPD1L
KEGG rclassRC00029
KEGG koko:K00006
KEGG ReactionR00842
KEGG Pathwayko00564,ko01110,ko04011,map00564,map01110,map04011
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0001932,GO:0001933,GO:0002027,GO:0002028,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003254,GO:0003674,GO:0003824,GO:0004367,GO:0004368,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006066,GO:0006067,GO:0006139,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006644,GO:0006650,GO:0006654,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0006936,GO:0006941,GO:0006950,GO:0006970,GO:0006972,GO:0006973,GO:0007610,GO:0007626,GO:0007629,GO:0008015,GO:0008016,GO:0008150,GO:0008152,GO:0008344,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009628,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0010765,GO:0010959,GO:0016020,GO:0016247,GO:0016491,GO:0016614,GO:0016616,GO:0016901,GO:0016999,GO:0017080,GO:0017144,GO:0019220,GO:0019222,GO:0019362,GO:0019637,GO:0019674,GO:0019725,GO:0022898,GO:0023051,GO:0023057,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030534,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031430,GO:0031672,GO:0031674,GO:0032268,GO:0032269,GO:0032409,GO:0032412,GO:0032501,GO:0032879,GO:0032880,GO:0033135,GO:0033137,GO:0033554,GO:0034308,GO:0034641,GO:0034762,GO:0034765,GO:0036296,GO:0042325,GO:0042326,GO:0042391,GO:0042592,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044325,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044464,GO:0045017,GO:0045936,GO:0046473,GO:0046474,GO:0046483,GO:0046486,GO:0046496,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051174,GO:0051186,GO:0051239,GO:0051246,GO:0051248,GO:0051716,GO:0055086,GO:0055093,GO:0055114,GO:0060047,GO:0060048,GO:0060255,GO:0060341,GO:0060373,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070482,GO:0071214,GO:0071470,GO:0071474,GO:0071704,GO:0071944,GO:0072524,GO:0080090,GO:0086001,GO:0086002,GO:0086003,GO:0086005,GO:0090036,GO:0090038,GO:0090407,GO:0098772,GO:0099080,GO:0099081,GO:0099512,GO:0104004,GO:1901360,GO:1901564,GO:1901576,GO:1901615,GO:1902305,GO:1902531,GO:1902532,GO:1903522,GO:1903827,GO:1903829,GO:1904062,GO:2000008,GO:2000010,GO:2000649
EggNOG free text desc.Glycerol-3-phosphate dehydrogenase 1-like
EggNOG OGs38E7F@33154,3BCI8@33208,3CVH2@33213,47ZP4@7711,48WCY@7742,49PRK@7898,COG0240@1,KOG2711@2759
EC1.1.1.8
COG Functional cat.C
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size211
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929317.0873735-CDS-H-paniculata_contig16588:3073..31111622929317.0873735-CDS-H-paniculata_contig16588:3073..3111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16588 3074..3111 +
1691480813.0164971-CDS-H-paniculata_contig16588:3073..31111691480813.0164971-CDS-H-paniculata_contig16588:3073..3111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16588 3074..3111 +
1622929317.1027298-CDS-H-paniculata_contig16588:3619..37911622929317.1027298-CDS-H-paniculata_contig16588:3619..3791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16588 3620..3791 +
1691480813.0298116-CDS-H-paniculata_contig16588:3619..37911691480813.0298116-CDS-H-paniculata_contig16588:3619..3791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16588 3620..3791 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16588.3735.1prot_H-paniculata_contig16588.3735.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16588 3074..3791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16588.3735.1

>prot_H-paniculata_contig16588.3735.1 ID=prot_H-paniculata_contig16588.3735.1|Name=mRNA_H-paniculata_contig16588.3735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
DKGGNSGAPIGRRIRAVSLIKGVDNGPEGLTLISDKIREGLHGAVPVSVL
MGANVANEVARDELCESTV*
back to top

mRNA from alignment at H-paniculata_contig16588:3074..3791+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16588.3735.1 ID=mRNA_H-paniculata_contig16588.3735.1|Name=mRNA_H-paniculata_contig16588.3735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=718bp|location=Sequence derived from alignment at H-paniculata_contig16588:3074..3791+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATAAAGGCGGAAATTCCGGTGCTCCCATCGGCCGCAGGTGAAGACACGG
CTAGTTACATCACTGTGCTACAGACAGTACAGCAGATTGCGCTTGAGACT
AACGCCTTGCAGCACCTTCGAAGGGGGGTGACGATTTCTGTATACGATTG
ACGGTTGTCTTCTGTACATACTAATTTCAAGTGGTGAAGAAGAAAGAGAA
AGAAAAAACGAACTGCCGAAGTGCAAGTTGCCTACTTTGTATCGCGATGA
AGGCTTTTAGAGGGGTACAGGGAATAAAGGTAGAGGGAAGATAATCCCTC
CATCCCCGGCCCCTCCCCATCTCTGATTCGATCTAGTTTAGTTGGGAAGT
GTCCTCACAGGAGTATACGATGAAGCCACTGTACGAATTGTATTTAGCTG
TTCACTCTGCCCCCCCCCCCGTTACCCCTCTGCCACGTTCTCCCGGGGAC
GCGTGGATAATGGTCTAACGTCTACGGCACACAAACAGGAATACGCTTGC
CCCACCCCTCTCCCCCCTTCCCCCGTCTCACTACTTCGCATATTAGGATA
CGCGCCGTGTCGCTGATCAAGGGCGTTGACAATGGCCCAGAAGGGCTGAC
GCTCATTTCCGACAAGATCCGGGAGGGGCTGCACGGTGCCGTGCCCGTGA
GCGTCCTCATGGGGGCGAACGTTGCGAATGAAGTGGCGAGAGATGAGCTT
TGCGAGTCCACGGTATGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16588:3074..3791+

>mRNA_H-paniculata_contig16588.3735.1 ID=mRNA_H-paniculata_contig16588.3735.1|Name=mRNA_H-paniculata_contig16588.3735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig16588:3074..3791+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATAAAGGCGGAAATTCCGGTGCTCCCATCGGCCGCAGGATAAAGGCGGA
AATTCCGGTGCTCCCATCGGCCGCAGGATACGCGCCGTGTCGCTGATCAA
GGGCGTTGACAATGGCCCAGAAGGGCTGACGCTCATTTCCGACAAGATCC
GGGAGGGGCTGCACGGTGCCGTGCCCGTGAGCGTCCTCATGGGGGCGAAC
GTTGCGAATGAAGTGGCGAGAGATGAGCTTTGCGAGTCCACGGTATGAGA
TACGCGCCGTGTCGCTGATCAAGGGCGTTGACAATGGCCCAGAAGGGCTG
ACGCTCATTTCCGACAAGATCCGGGAGGGGCTGCACGGTGCCGTGCCCGT
GAGCGTCCTCATGGGGGCGAACGTTGCGAATGAAGTGGCGAGAGATGAGC
TTTGCGAGTCCACGGTATGA
back to top