|
|
Homology
BLAST of mRNA_H-paniculata_contig1658.3731.1 vs. uniprot
Match: A0A6H5K0I5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I5_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 1.700e-5 Identity = 37/103 (35.92%), Postives = 65/103 (63.11%), Query Frame = 1
Query: 577 EKEAQYLRERLETIPGEIKTENNRAWEQREQKLREAVGAEVRAQADAEATEXXXXXKTDLEAALARQSDELAASHRAALRDAVGATAAEKDVLLSEIRQSATR 885
E++A+ LRERLE +PGE++ E R ++++E+ +RE + + D++A + +LE +LA +++EL ASH A+L+ A A AAE+D + ++R R
Sbjct: 586 EEQAELLRERLERVPGEVRAELEREFQEKERLVREGMQQCL----DSQAAGMETLWRAELERSLALRTEELEASHEASLKGATAAAAAERDEAVRQVRDELAR 684
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 65.5 |
| Seed ortholog evalue | 9.7e-08 |
| Seed eggNOG ortholog | 2880.D8LJM5 |
| KEGG ko | ko:K10395 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | microtubule motor activity |
| EggNOG OGs | COG5059@1,KOG0244@2759 |
| COG Functional cat. | Z |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04812 |
| Exons | 3 |
| Model size | 1770 |
| Cds size | 1770 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1658.3731.1 >prot_H-paniculata_contig1658.3731.1 ID=prot_H-paniculata_contig1658.3731.1|Name=mRNA_H-paniculata_contig1658.3731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=590bp
SAAAQAEEEARLERDRIVQETDAAAQKSTAAVSELHRQLERSRQDLEQAQ RSQADQAHQASRTAQAAQSAAAQAEEEARLERDRIVQEADAAAQKSAAAV SELHRQLERSRQDLERAQRSQADQAHQASRTAKAAQAAAARAEEEARLER DRIVREADDAAQKSAVAVDVAERRAEQAEAAVDASADKVRAVEKEAQYLR ERLETIPGEIKTENNRAWEQREQKLREAVGAEVRAQADAEATEAQAAAKT DLEAALARQSDELAASHRAALRDAVGATAAEKDVLLSEIRQSATRLEGRS RLAEGALEEARSEGQAARAEAADARRAARKLEELAALREKALGKAKLAVA VATAAAADELVAAVKKEKASAAALLEEAARNADELHRRTMEETTRRFAEE KRELTEAAAVEKTGALAEVRVELAQGLEAGEREHRLELDRAMQEFEEQKR VAVEEALGRALKEREEAETAMRRSLQEEFQAEHGAADVAREEERTRVEEE RAQAEAERCADVARQHAQDKADAVKAATEARSREAQRKWEEERRALQGEW DAWRSRDAFETARRHTEDTAEAVTVAVEEERDRLEGRLRE back to topmRNA from alignment at H-paniculata_contig1658:18918..23130+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1658.3731.1 ID=mRNA_H-paniculata_contig1658.3731.1|Name=mRNA_H-paniculata_contig1658.3731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4213bp|location=Sequence derived from alignment at H-paniculata_contig1658:18918..23130+ (Halopteris paniculata Hal_grac_a_UBK monoicous) TCCGCCGCCGCCCAGGCAGAAGAAGAAGCACGGCTCGAGCGAGACAGGAT
AGTCCAAGAGACAGACGCCGCCGCCCAGAAGAGCACCGCTGCCGTCTCAG
AGCTGCACCGGCAACTAGAACGGTCTCGTCAGGATCTCGAGCAAGCGCAG
CGATCGCAAGCCGACCAAGCTCACCAAGCTAGCCGAACGGCACAAGCTGC
ACAGTCCGCCGCCGCCCAGGCAGAAGAAGAAGCACGGCTCGAGCGAGACA
GGATAGTCCAAGAGGCAGACGCCGCCGCCCAGAAGAGCGCCGCGGCCGTT
TCAGAGCTGCACCGGCAACTAGAACGATCTCGTCAGGATCTCGAGCGCGC
GCAGCGGTCGCAAGCCGACCAAGCTCACCAAGCTAGCCGAACCGCAAAAG
CCGCGCAGGCCGCCGCTGCCCGAGCAGAAGAAGAAGCGCGACTCGAGCGA
GACAGGATAGTCCGAGAGGCAGACGACGCCGCCCAGAAGAGCGCCGTGGC
CGTCGACGTCGCAGAACGGCGCGCGGAACAGGCGGAAGCAGCCGTGGACG
CTTCCGCCGACAAGGTATACGCTGCTACTGTTGTACAAGAGCCTGCGTTT
ATCGGCGTGCTTTTTTTTTCAAATTCTCAGAAGATCGAAGTAAAAATCCT
TCCCGAAATCTACGCCCTGTTTTTTTCCGTATGCCAGTTCTCGCCCAGCT
GGTAACGGCAGTTGGTGTTTTCCCATCAACCTCACGCGCACCGGCTTGCT
GCGTGTTCGTTGGGCCATACTCTCAGTAGCCCCAGCCTGTGTGGCATGGT
CATTGGGTGATCAGATCTCGAGACACAGTGCCCAGCATCATGGGTCATTC
AGATAACAATTGCATCATCAGAAAGAGTTGTAGTTTCAAGACAGGGAGAA
TACGTAATTCGTCATCATACGCTACCACATTTGAATCATAAGAACCTTCG
CAGACCTTTTCAAGATTGATATCACATACATGACGTAAAACTCGGAGGTA
TCGCACTACCGGGGTACGAACTTTTTTCAAACGCGAGTATCGAGAACGGA
GATATCACGGGGTCCAAATAGCCCGTCAATGGACAGATTTACACAATATC
TTTCCAACTACACACTACTCGTTGTCAGTTCTGCCGTAGTTATCGAGATA
ATCGCGTTTGAAAAATGTTGGCACCCCGGTGGCGGCGGTGCCTCCGGGTT
CTACGCTATACAATCGTCACCACCGTACGATCAACCATATGCCCGAGTGT
GCCCATTTTCATCGGATATGTTGAGCTCACAAATACCGTAATAAGCCAAG
ATGTCCGTCAAGATTCGTGTGTAGAATATTCTTGTTGGTTTTACAGACTT
GAAAAACGTGGTCTGAGTCGACCCCTTCAGGGGCCGGACCTCGGGACGGC
CAAAGTATAGATTTTGGTCACCGATCAGTCATGCATACTAACGAACACGT
CTACAAAATACCAACTGGCTCTAGACAGCAAGCCAGTATATCTCAGGTCC
CAAAAGCGGTCGTTGTTTTGCCGATGGGAACCCTATTCTCTTTAGTTGAG
CATAGAGCGAGAGCCGCTGAACGCCCAACGTCTCTTGCAACGACAACACA
ACAAACTAGCCTTGCAGAGCTGACCAGGGGCGGGTCATAGGCTCCTCAAG
GTGTTAACACCGCCAATTTTACGACGCCCTCCCCTACCCCCATTCTTATG
TACAACTAGCCATTCGCCCGTATTCTCGAGCATTCCCTCTAATGTATTTC
GGCATCCCCCCTTCCTCTACAACTATTCGTTGTTTTTTTGTTCTTCTCGC
GCACACGCGCAAGGTTCGCGCCGTGGAAAAGGAGGCGCAGTACCTCCGGG
AACGTCTAGAGACCATCCCCGGGGAAATCAAGACGGAGAACAACAGGGCC
TGGGAGCAGAGGGAACAGAAATTACGCGAAGCTGTCGGCGCTGAGGTGGG
ATAACATCGAGGGGGAATCAGCATGGCCGGCAACACGTACAAAGCGAACA
TTACCCAGCCTTGTGTTTGTCTTTCTCAGACTTTGAAGAATAGGGCCTTT
GGGGGGGATAAAACTCTTGATTCGTGTGTATGGTGTGTTCTTGCACGATG
CAGGAGAGAGTGAGCGCTAGTTAGCAGGGTGTATTACGGTACACTATGGA
ATCCTTACGGAACGGGAAGGGTCGCGCCGTGCGGTCGGGCTTTCGGAGGG
TAGGATCTCGTGACATCCCGTCGTTTTGAACCGGGTCTCATCCCGTCCCG
CAAGTCGCAGAACCCATACATTAATCAAGTACAAATCCCGTCCCCTCGCG
ACCGGAAATCGAAGTAGACGATAGAGAAACGTTTTAATCCTGGGCTTGCG
AAAAGAAGGCCATAGCGATTCTAGGATATAGGAATTGACCTGAATAGGTG
AGTGCTGACGTTAAAATGGTTAGGTGACGAGCGATTAACCATCGGAAATC
ACTCTAAAAGGAACAAAGCTCCGTCCTCCAGAGGACGCGTGGTCAAAGAT
CTGACGACTACTGCATATCAAGTGTGAGTAGGCCTCCTCCTTCTCTCCCG
ACCCGAGCCGTCAAAAACGTGAACTCTCTATTTCCCATCCCCTCCCATCC
CGTGAACATGTGAGCCCCACCTGTCCCGTACCGTCCCATGACTCCATGAT
AAGCCCTGCTACTTGGGGTAAAAACTTTGACGTTACCCCTTCAGTCGTAT
GTCTCATGTATCTTCGAGTTGTATTTGTCTGGATATTCAATTGGTTGTTT
TTGTTGTAGTTTGCGGTGCCGTGTGCGACTGGGAAATAGCTCACGACCCC
CGTGCATTTGCGCACGCCCCCCAGCCCATGCGCATTTATATCGTGCGCTT
ATACCTTTAATGTTAATGTGTTCTCTTGCAAGCATAATAAATGATGTGCT
ATTCCCAAAATGAACCCCATGTAAGTCTTTTTTTCTTTATAAGCTTTGAA
TATCGTCAATGTTGCTGGGGTTTTTTTCAATGCACACCAAATATTGCTCC
TCCTTTATTCGTCTTTTTTCAACAGCATCGATTTTCTTACTCTGTTGTTA
CGATTTAAGGACGTTTTGAAAATCGGTTTCGCTTGAACCTCCTTGCCCAC
CCCCCGATCTCCATTTCATCCATGTTTCTTGCCTCTCAGGTACGCGCGCA
GGCCGACGCCGAAGCGACCGAAGCACAAGCCGCGGCAAAGACCGACCTCG
AAGCGGCGCTCGCCCGACAATCCGATGAGCTCGCGGCGTCCCATCGCGCC
GCTCTCCGCGACGCGGTCGGCGCAACGGCGGCCGAGAAAGACGTCCTCCT
GTCCGAAATTCGGCAGTCCGCGACGCGCCTTGAGGGCCGCTCGAGGTTGG
CGGAAGGGGCACTGGAAGAAGCGCGGAGCGAAGGGCAAGCCGCCCGCGCG
GAAGCTGCTGATGCGCGCAGAGCTGCCAGGAAACTGGAGGAGCTGGCGGC
GCTGCGGGAGAAGGCTCTGGGGAAAGCAAAATTGGCGGTGGCGGTTGCGA
CCGCGGCGGCGGCGGATGAGCTGGTGGCGGCCGTGAAAAAAGAAAAGGCG
AGTGCTGCGGCGCTGTTGGAAGAAGCGGCCAGGAACGCTGACGAGCTTCA
CCGTCGGACGATGGAAGAGACCACGCGTAGGTTCGCGGAGGAGAAGCGGG
AGCTGACGGAAGCTGCGGCTGTTGAGAAGACTGGTGCTCTGGCGGAGGTA
AGAGTAGAGCTCGCGCAGGGGTTGGAGGCAGGCGAGCGGGAGCACCGGCT
TGAGCTCGACAGGGCAATGCAGGAATTCGAGGAGCAAAAGCGAGTCGCCG
TGGAGGAAGCGTTAGGGAGGGCCTTGAAGGAACGTGAGGAAGCAGAGACC
GCTATGCGTCGCTCGCTGCAGGAAGAATTCCAGGCAGAACATGGGGCGGC
GGATGTAGCGAGGGAGGAAGAGCGGACTCGAGTGGAGGAGGAACGAGCGC
AAGCCGAAGCGGAGCGATGTGCCGACGTCGCCCGGCAACATGCTCAAGAT
AAGGCCGACGCCGTGAAGGCGGCCACCGAGGCTCGCAGCAGAGAGGCGCA
AAGGAAGTGGGAAGAAGAGCGGCGCGCGTTGCAGGGGGAGTGGGACGCGT
GGAGATCGCGCGATGCATTCGAGACTGCGCGGCGGCACACTGAGGACACA
GCAGAAGCTGTGACAGTGGCGGTTGAAGAGGAGAGGGATAGGCTCGAAGG
GAGGTTGAGGGAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig1658:18918..23130+ >mRNA_H-paniculata_contig1658.3731.1 ID=mRNA_H-paniculata_contig1658.3731.1|Name=mRNA_H-paniculata_contig1658.3731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3540bp|location=Sequence derived from alignment at H-paniculata_contig1658:18918..23130+ (Halopteris paniculata Hal_grac_a_UBK monoicous) TCCGCCGCCGCCCAGGCAGAAGAAGAAGCACGGCTCGAGCGAGACAGGAT AGTCCAAGAGACAGACGCCGCCGCCCAGAAGAGCACCGCTGCCGTCTCAG AGCTGCACCGGCAACTAGAACGGTCTCGTCAGGATCTCGAGCAAGCGCAG CGATCGCAAGCCGACCAAGCTCACCAAGCTAGCCGAACGGCACAAGCTGC ACAGTCCGCCGCCGCCCAGGCAGAAGAAGAAGCACGGCTCGAGCGAGACA GGATAGTCCAAGAGGCAGACGCCGCCGCCCAGAAGAGCGCCGCGGCCGTT TCAGAGCTGCACCGGCAACTAGAACGATCTCGTCAGGATCTCGAGCGCGC GCAGCGGTCGCAAGCCGACCAAGCTCACCAAGCTAGCCGAACCGCAAAAG CCGCGCAGGCCGCCGCTGCCCGAGCAGAAGAAGAAGCGCGACTCGAGCGA GACAGGATAGTCCGAGAGGCAGACGACGCCGCCCAGAAGAGCGCCGTGGC CGTCGACGTCGCAGAACGGCGCGCGGAACAGGCGGAAGCAGCCGTGGACG CTTCCGCCGACAAGTCCGCCGCCGCCCAGGCAGAAGAAGAAGCACGGCTC GAGCGAGACAGGATAGTCCAAGAGACAGACGCCGCCGCCCAGAAGAGCAC CGCTGCCGTCTCAGAGCTGCACCGGCAACTAGAACGGTCTCGTCAGGATC TCGAGCAAGCGCAGCGATCGCAAGCCGACCAAGCTCACCAAGCTAGCCGA ACGGCACAAGCTGCACAGTCCGCCGCCGCCCAGGCAGAAGAAGAAGCACG GCTCGAGCGAGACAGGATAGTCCAAGAGGCAGACGCCGCCGCCCAGAAGA GCGCCGCGGCCGTTTCAGAGCTGCACCGGCAACTAGAACGATCTCGTCAG GATCTCGAGCGCGCGCAGCGGTCGCAAGCCGACCAAGCTCACCAAGCTAG CCGAACCGCAAAAGCCGCGCAGGCCGCCGCTGCCCGAGCAGAAGAAGAAG CGCGACTCGAGCGAGACAGGATAGTCCGAGAGGCAGACGACGCCGCCCAG AAGAGCGCCGTGGCCGTCGACGTCGCAGAACGGCGCGCGGAACAGGCGGA AGCAGCCGTGGACGCTTCCGCCGACAAGGTTCGCGCCGTGGAAAAGGAGG CGCAGTACCTCCGGGAACGTCTAGAGACCATCCCCGGGGAAATCAAGACG GAGAACAACAGGGCCTGGGAGCAGAGGGAACAGAAATTACGCGAAGCTGT CGGCGCTGAGGTTCGCGCCGTGGAAAAGGAGGCGCAGTACCTCCGGGAAC GTCTAGAGACCATCCCCGGGGAAATCAAGACGGAGAACAACAGGGCCTGG GAGCAGAGGGAACAGAAATTACGCGAAGCTGTCGGCGCTGAGGTACGCGC GCAGGCCGACGCCGAAGCGACCGAAGCACAAGCCGCGGCAAAGACCGACC TCGAAGCGGCGCTCGCCCGACAATCCGATGAGCTCGCGGCGTCCCATCGC GCCGCTCTCCGCGACGCGGTCGGCGCAACGGCGGCCGAGAAAGACGTCCT CCTGTCCGAAATTCGGCAGTCCGCGACGCGCCTTGAGGGCCGCTCGAGGT TGGCGGAAGGGGCACTGGAAGAAGCGCGGAGCGAAGGGCAAGCCGCCCGC GCGGAAGCTGCTGATGCGCGCAGAGCTGCCAGGAAACTGGAGGAGCTGGC GGCGCTGCGGGAGAAGGCTCTGGGGAAAGCAAAATTGGCGGTGGCGGTTG CGACCGCGGCGGCGGCGGATGAGCTGGTGGCGGCCGTGAAAAAAGAAAAG GCGAGTGCTGCGGCGCTGTTGGAAGAAGCGGCCAGGAACGCTGACGAGCT TCACCGTCGGACGATGGAAGAGACCACGCGTAGGTTCGCGGAGGAGAAGC GGGAGCTGACGGAAGCTGCGGCTGTTGAGAAGACTGGTGCTCTGGCGGAG GTAAGAGTAGAGCTCGCGCAGGGGTTGGAGGCAGGCGAGCGGGAGCACCG GCTTGAGCTCGACAGGGCAATGCAGGAATTCGAGGAGCAAAAGCGAGTCG CCGTGGAGGAAGCGTTAGGGAGGGCCTTGAAGGAACGTGAGGAAGCAGAG ACCGCTATGCGTCGCTCGCTGCAGGAAGAATTCCAGGCAGAACATGGGGC GGCGGATGTAGCGAGGGAGGAAGAGCGGACTCGAGTGGAGGAGGAACGAG CGCAAGCCGAAGCGGAGCGATGTGCCGACGTCGCCCGGCAACATGCTCAA GATAAGGCCGACGCCGTGAAGGCGGCCACCGAGGCTCGCAGCAGAGAGGC GCAAAGGAAGTGGGAAGAAGAGCGGCGCGCGTTGCAGGGGGAGTGGGACG CGTGGAGATCGCGCGATGCATTCGAGACTGCGCGGCGGCACACTGAGGAC ACAGCAGAAGCTGTGACAGTGGCGGTTGAAGAGGAGAGGGATAGGCTCGA AGGGAGGTTGAGGGAAGTACGCGCGCAGGCCGACGCCGAAGCGACCGAAG CACAAGCCGCGGCAAAGACCGACCTCGAAGCGGCGCTCGCCCGACAATCC GATGAGCTCGCGGCGTCCCATCGCGCCGCTCTCCGCGACGCGGTCGGCGC AACGGCGGCCGAGAAAGACGTCCTCCTGTCCGAAATTCGGCAGTCCGCGA CGCGCCTTGAGGGCCGCTCGAGGTTGGCGGAAGGGGCACTGGAAGAAGCG CGGAGCGAAGGGCAAGCCGCCCGCGCGGAAGCTGCTGATGCGCGCAGAGC TGCCAGGAAACTGGAGGAGCTGGCGGCGCTGCGGGAGAAGGCTCTGGGGA AAGCAAAATTGGCGGTGGCGGTTGCGACCGCGGCGGCGGCGGATGAGCTG GTGGCGGCCGTGAAAAAAGAAAAGGCGAGTGCTGCGGCGCTGTTGGAAGA AGCGGCCAGGAACGCTGACGAGCTTCACCGTCGGACGATGGAAGAGACCA CGCGTAGGTTCGCGGAGGAGAAGCGGGAGCTGACGGAAGCTGCGGCTGTT GAGAAGACTGGTGCTCTGGCGGAGGTAAGAGTAGAGCTCGCGCAGGGGTT GGAGGCAGGCGAGCGGGAGCACCGGCTTGAGCTCGACAGGGCAATGCAGG AATTCGAGGAGCAAAAGCGAGTCGCCGTGGAGGAAGCGTTAGGGAGGGCC TTGAAGGAACGTGAGGAAGCAGAGACCGCTATGCGTCGCTCGCTGCAGGA AGAATTCCAGGCAGAACATGGGGCGGCGGATGTAGCGAGGGAGGAAGAGC GGACTCGAGTGGAGGAGGAACGAGCGCAAGCCGAAGCGGAGCGATGTGCC GACGTCGCCCGGCAACATGCTCAAGATAAGGCCGACGCCGTGAAGGCGGC CACCGAGGCTCGCAGCAGAGAGGCGCAAAGGAAGTGGGAAGAAGAGCGGC GCGCGTTGCAGGGGGAGTGGGACGCGTGGAGATCGCGCGATGCATTCGAG ACTGCGCGGCGGCACACTGAGGACACAGCAGAAGCTGTGACAGTGGCGGT TGAAGAGGAGAGGGATAGGCTCGAAGGGAGGTTGAGGGAA back to top
|