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Homology
BLAST of mRNA_H-paniculata_contig1654.3721.1 vs. uniprot
Match: A0A6H5JAG5_9PHAE (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG5_9PHAE) HSP 1 Score: 119 bits (298), Expect = 7.310e-29 Identity = 64/84 (76.19%), Postives = 72/84 (85.71%), Query Frame = 1
Query: 85 VGASASQRKYDGSTLLYDPKGRMFQVEYAMEATRRGRTVVGVCGDGCVALVARDPTS-SSSCRAVAAG-GVRAVDSHIGIAASG 330
VGAS+SQRKYDGSTL YDPKGR++QVEYAMEATRRGRTV+GVCG GCVALV RDP+ +SSCRA GV AVD+H+GIAA G
Sbjct: 20 VGASSSQRKYDGSTLSYDPKGRIYQVEYAMEATRRGRTVLGVCGGGCVALVTRDPSPPTSSCRAAGPHKGVWAVDTHVGIAACG 103
BLAST of mRNA_H-paniculata_contig1654.3721.1 vs. uniprot
Match: A0A6H5K6L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L4_9PHAE) HSP 1 Score: 122 bits (307), Expect = 7.300e-28 Identity = 112/305 (36.72%), Postives = 143/305 (46.89%), Query Frame = 1
Query: 409 MPCKMLARRLADLVHSCTTRGGKRPLAVDILLAGVDGHTGASLFQVQATGAFQRYRATAVGGDGGTVRARLANPPAWVGGEKQSASPEGEG--KGVDDQRGRDVSENTEAREKFSSDASLLQKANGGERGVHDGWSFEGKGDENSDNSRGIFQGDGTTADRSDPDGWKRRREQQRWPRLAPKQRQALKRALAALWNSEN-------------DRGGQSSDAPDGGEAILVRGGLKASELSATIYG-----TTEALCELGARGDDWGG--GAAGLDGEDSDGV--RRFECSVEDCEEILLELEAEE 1251
MPC++L+RRLADL+HSCTTRGGKRPLAVDIL+ GVD H GASL +VQATGAFQRYRA A G ++ +G + DD +S T + + A+ GE G G+GD + Q R LAP+ R ALKRA+AALW GG+ G RGGL+A+EL+AT+YG + E+ E G+ G G AGL G + +G + CS E+ E ILLELEAE+
Sbjct: 1 MPCQILSRRLADLIHSCTTRGGKRPLAVDILVGGVDDHAGASLHRVQATGAFQRYRAFAAGXXXXXXXXXXXXXXXXXXDAREVXXXXXDGLRQASDDAVPGYLSGETRQGVPVDATTTSADGASSGEDG--------GRGDAEDSATVAXXXXXXXXXXXXXXXXXXXXXGQGRGT-LAPEHRAALKRAVAALWEPAGGXXXXXXXXXXXXSAGGEERH----GREAATRGGLRAAELTATVYGIQRQASVESPKEERGGGESLGDPVGDAGLGGGEGEGAWEQGVGCSREEMESILLELEAED 292
BLAST of mRNA_H-paniculata_contig1654.3721.1 vs. uniprot
Match: A0A7L4R5D4_9ARCH (Proteasome subunit alpha n=1 Tax=Candidatus Micrarchaeota archaeon TaxID=2250274 RepID=A0A7L4R5D4_9ARCH) HSP 1 Score: 115 bits (288), Expect = 7.360e-26 Identity = 64/160 (40.00%), Postives = 92/160 (57.50%), Query Frame = 1
Query: 112 YDGSTLLYDPKGRMFQVEYAMEATRRGRTVVGVCGDGCVALVARDPTSSSSCRAVAAGGVRAVDSHIGIAASGLRSDVQYVADCARTWCSEHRFVFGEPMPCKMLARRLADLVHSCTTRGGKRPLAVDILLAGVDGHTGASLFQVQATGAFQRYRATAVG 591
YD + ++ P GR+FQVEYA EA +RG T +G+C DG VALVA S + + VD H+ + ASGL +D + + + AR H+ F EP P + +AR + DL+ T GG RP V +L+AGV G +G LF+ + +GA Y A ++G
Sbjct: 9 YDRAITVFSPDGRLFQVEYAKEAVKRGATAIGLCTDGAVALVAYKAAHSKLIVPESMQKIFDVDDHMCVTASGLIADARKLVEVARLQAQRHKMTFSEPAPTESIARHVCDLMQLYTQYGGIRPFGVSLLVAGV-GKSGPELFEAEPSGAMTGYFADSIG 167
BLAST of mRNA_H-paniculata_contig1654.3721.1 vs. uniprot
Match: A0A7J3BP35_9ARCH (Proteasome subunit alpha n=1 Tax=Candidatus Micrarchaeota archaeon TaxID=2250274 RepID=A0A7J3BP35_9ARCH) HSP 1 Score: 112 bits (281), Expect = 6.910e-25 Identity = 60/164 (36.59%), Postives = 88/164 (53.66%), Query Frame = 1
Query: 100 SQRKYDGSTLLYDPKGRMFQVEYAMEATRRGRTVVGVCGDGCVALVARDPTSSSSCRAVAAGGVRAVDSHIGIAASGLRSDVQYVADCARTWCSEHRFVFGEPMPCKMLARRLADLVHSCTTRGGKRPLAVDILLAGVDGHTGASLFQVQATGAFQRYRATAVG 591
S + YD + ++ P GR+FQVEYA EA +RG T +G+C V VA S A + + VD HI + ASGL +D + + + AR HR + EP P + +AR + DL+ T GG RP V +L+ GVD L++ + +GA Y A ++G
Sbjct: 5 SPQAYDRAITVFSPDGRLFQVEYAKEAVKRGATAIGICSKNSVVFVASKTIHSKLIVADSLKKIFEVDEHIAVTASGLIADARRLVETARVEAQRHRITYNEPAPVETIARSVGDLLQVYTQYGGIRPFGVSLLIGGVDSSKRPELYEAEPSGAMTAYYADSIG 168
BLAST of mRNA_H-paniculata_contig1654.3721.1 vs. uniprot
Match: A0A7S1LZQ1_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1LZQ1_NEODS) HSP 1 Score: 114 bits (284), Expect = 7.140e-25 Identity = 72/192 (37.50%), Postives = 105/192 (54.69%), Query Frame = 1
Query: 61 ALVYFIFVVGASASQ---RKYDGSTLLYDPKGRMFQVEYAMEATRRGRTVVGVCGDGCVALVA--RDPTSSSSCRAVAAGGVRAVDSHIGIAASGLRSDVQYVADCARTWCSEHRFVFGEPMPCKMLARRLADLVHSCTTRGGKRPLAVDILLAGVDGHTGASLFQVQATGAFQRYRATAVGGDGGTVRARL 621
+++Y++ +AS+ YDGS + P GR+FQ+EYAMEA ++G VGV +VA R PT+ S V VD H G++ +GL +D +Y+A R+ C EH + +G P P K LA+++AD S T G KRP V +L+AG D TG L Q +G ++ATA+G + R L
Sbjct: 3 SVLYWVATARGAASEMFKNLYDGSITTWSPNGRLFQMEYAMEAVKQGSATVGVKSKTHAVIVALKRSPTTQLSSYQEK---VFKVDKHCGLSVAGLITDGRYLASTMRSACFEHSYQYGSPFPVKRLAQQIADKYQSHTIVGVKRPFGVGLLIAGFDS-TGPQLLQAVPSGELHEFKATAMGARSQSARTYL 190
BLAST of mRNA_H-paniculata_contig1654.3721.1 vs. uniprot
Match: A0A0W1R503_9EURY (Proteasome subunit alpha n=5 Tax=Haloprofundus TaxID=1911573 RepID=A0A0W1R503_9EURY) HSP 1 Score: 112 bits (281), Expect = 8.340e-25 Identity = 65/176 (36.93%), Postives = 98/176 (55.68%), Query Frame = 1
Query: 94 SASQRKYDGSTLLYDPKGRMFQVEYAMEATRRGRTVVGVCGDGCVALVARDPTSSSSCRAVAAGGVRAVDSHIGIAASGLRSDVQYVADCARTWCSEHRFVFGEPMPCKMLARRLADLVHSCTTRGGKRPLAVDILLAGVDGHTGASLFQVQATGAFQRYRATAVGGDGGTVRARL 621
+++Q+ YD T LY P GR++QVEYA EA +RG VVG+ V L AR +SS + + VD H+G A++G +D + + D AR +R +GEP + L + + D + T RGG RP +L+AGVD TG LF+ +G ++A A+GG+ ++R L
Sbjct: 3 NSNQQAYDRGTSLYSPDGRIYQVEYAREAVKRGAPVVGIRAADGVVLAARTRSSSPLMVTESIEKLHKVDDHVGAASAGHVADARRLVDYARQEAQVNRLRYGEPAGVEALTKEVTDFIQENTQRGGTRPFGAALLVAGVDA-TGPRLFETDPSGTPHEWKAVAIGGESASIREYL 177
BLAST of mRNA_H-paniculata_contig1654.3721.1 vs. uniprot
Match: A0A5E4I2E0_9ARCH (Proteasome subunit alpha n=1 Tax=uncultured archaeon TaxID=115547 RepID=A0A5E4I2E0_9ARCH) HSP 1 Score: 112 bits (280), Expect = 9.510e-25 Identity = 67/171 (39.18%), Postives = 97/171 (56.73%), Query Frame = 1
Query: 94 SASQRKYDGSTLLYDPKGRMFQVEYAMEATRRGRTVVGV-CGDGCVALVARDPTSS----SSCRAVAAGGVRAVDSHIGIAASGLRSDVQYVADCARTWCSEHRFVFGEPMPCKMLARRLADLVHSCTTRGGKRPLAVDILLAGVDGHTGASLFQVQATGAFQRYRATAVG 591
S + YD + ++ P GR+FQVEYA EA +RG T VGV C DG V ++ TSS S + + +D+HI ASGL +D + + D AR HR + EP +++A+ L D++ + T GG RP V +L+AGVDG A L++ + +GA Y+A AVG
Sbjct: 4 SPQAQAYDRAITVFSPDGRLFQVEYAKEAVKRGATAVGVVCADGVVLAAFKNATSSLLVPESMKKIFE-----IDTHIASTASGLIADARRLVDIARLEAQRHRLSYAEPASVELIAKNLCDIMQAYTQYGGIRPFGVSLLIAGVDGS--AKLYEAEPSGALTGYKAAAVG 167
BLAST of mRNA_H-paniculata_contig1654.3721.1 vs. uniprot
Match: A0A256XLX2_9CREN (Proteasome subunit alpha n=3 Tax=Archaea TaxID=2157 RepID=A0A256XLX2_9CREN) HSP 1 Score: 112 bits (280), Expect = 9.970e-25 Identity = 61/163 (37.42%), Postives = 90/163 (55.21%), Query Frame = 1
Query: 112 YDGSTLLYDPKGRMFQVEYAMEATRRGRTVVGVCGDGCVALVARDPTSSSSCRAVAAGGVRAVDSHIGIAASGLRSDVQYVADCARTWCSEHRFVFGEPMPCKMLARRLADLVHSCTTRGGKRPLAVDILLAGVDGHTGASLFQVQATGAFQRYRATAVGGDG 600
YD + ++ P GR+FQVEYA EA ++G T +G+ G V L S + + +D H+G+A +GL SD + + D AR + HR V+GEP+P ++LA+R+ D+ + T GG RP V L+AGVD T L G + Y+A A+G G
Sbjct: 9 YDRAITIFSPDGRLFQVEYAFEAVKKGWTTLGIKGKDGVVLAVEKRQVSPLMEGMEK--INKIDDHVGLAFAGLSSDARILIDQARLYAQRHRLVYGEPIPIELLAKRICDIKQAYTQHGGVRPFGVSFLIAGVDA-TAQHLIGTDPGGTYVNYKAHAIGSGG 168
BLAST of mRNA_H-paniculata_contig1654.3721.1 vs. uniprot
Match: A0A5E4IM51_9ARCH (Proteasome subunit alpha n=1 Tax=uncultured archaeon TaxID=115547 RepID=A0A5E4IM51_9ARCH) HSP 1 Score: 112 bits (280), Expect = 1.090e-24 Identity = 66/169 (39.05%), Postives = 95/169 (56.21%), Query Frame = 1
Query: 88 GASASQRKYDGSTLLYDPKGRMFQVEYAMEATRRGRTVVG-VCGDGCVALVARDPTSSSSCRAVAAGGVRAVDSHIGIAASGLRSDVQYVADCARTWCSEHRFVFGEPMPCKMLARRLADLVHSCTTRGGKRPLAVDILLAGVDGHTGASLFQVQATGAFQRYRATAVG 591
G A+ + YD + ++ P GR+FQVEYA EA RRG T VG VCGD V L A S+ A + V +D H+ ASGL +D + + D AR H+ +GEP+ +++ + L DL+ T GG RP V +L+AG+D LF+ + +GA Y+A A+G
Sbjct: 6 GGGANPQAYDRAITVFSPDGRLFQVEYAKEAVRRGATAVGIVCGDA-VVLAAYKNVVSNLLVADSMRKVFEIDDHVAATASGLIADARRLVDIARLEAQRHKIAYGEPVSIEIITKELCDLMQVYTQYGGIRPFGVSLLVAGIDDEP--KLFEAEPSGAMTGYKADAIG 171
BLAST of mRNA_H-paniculata_contig1654.3721.1 vs. uniprot
Match: A0A7J3X9M7_THEPE (Proteasome subunit alpha n=3 Tax=Thermofilum TaxID=2268 RepID=A0A7J3X9M7_THEPE) HSP 1 Score: 112 bits (279), Expect = 1.340e-24 Identity = 64/167 (38.32%), Postives = 93/167 (55.69%), Query Frame = 1
Query: 94 SASQRKYDGSTLLYDPKGRMFQVEYAMEATRRGRTVVGVCG-DGCVALVARDPTSSSSCRAVAAGGVRAVDSHIGIAASGLRSDVQYVADCARTWCSEHRFVFGEPMPCKMLARRLADLVHSCTTRGGKRPLAVDILLAGVDGHTGASLFQVQATGAFQRYRATAVG 591
+A YD + ++ P+GR++QVEYA EA +RG T +GV DG V V + TS A ++ +D H+G+A +GL D + + D AR + HR V+GEP+P +ML +R+ D+ T GG RP V L AG+D G L Q G + R +A A+G
Sbjct: 4 AAPMAGYDRAITIFSPEGRLYQVEYAYEAVKRGMTALGVKAVDGVVLAVEKKSTSPL---VEGAEKIKKIDDHVGVAFAGLFGDARVLIDQARIYAQTHRLVYGEPIPIEMLVKRICDIKQVYTQHGGVRPFGVAFLFAGID-RKGVHLIQTDPGGTYLRCKARAIG 166
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Archaea |
| Seed ortholog score | 122.5 |
| Seed ortholog evalue | 4.8e-25 |
| Seed eggNOG ortholog | 797210.Halxa_2757 |
| Preferred name | psmA |
| KEGG ko | ko:K03432 |
| KEGG Pathway | ko03050,map03050 |
| KEGG Module | M00342,M00343 |
| Hectar predicted targeting category | signal peptide |
| GOs | GO:0000502,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005839,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016787,GO:0019538,GO:0019773,GO:0030163,GO:0032991,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369 |
| EggNOG free text desc. | Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation |
| EggNOG OGs | 23VCX@183963,2XWXV@28890,COG0638@1,arCOG00971@2157 |
| Ec32 ortholog description | Nucleophile aminohydrolases, N-terminal |
| Ec32 ortholog | Ec-07_005450.1 |
| EC | 3.4.25.1 |
| COG Functional cat. | O |
| Best tax level | Halobacteria |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01002,ko03051 |
| Exons | 5 |
| Model size | 1469 |
| Cds size | 1269 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1654.3721.1 >prot_H-paniculata_contig1654.3721.1 ID=prot_H-paniculata_contig1654.3721.1|Name=mRNA_H-paniculata_contig1654.3721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=423bp
MLRETAARYKALVYFIFVVGASASQRKYDGSTLLYDPKGRMFQVEYAMEA
TRRGRTVVGVCGDGCVALVARDPTSSSSCRAVAAGGVRAVDSHIGIAASG
LRSDVQYVADCARTWCSEHRFVFGEPMPCKMLARRLADLVHSCTTRGGKR
PLAVDILLAGVDGHTGASLFQVQATGAFQRYRATAVGGDGGTVRARLANP
PAWVGGEKQSASPEGEGKGVDDQRGRDVSENTEAREKFSSDASLLQKANG
GERGVHDGWSFEGKGDENSDNSRGIFQGDGTTADRSDPDGWKRRREQQRW
PRLAPKQRQALKRALAALWNSENDRGGQSSDAPDGGEAILVRGGLKASEL
SATIYGTTEALCELGARGDDWGGGAAGLDGEDSDGVRRFECSVEDCEEIL
LELEAEEMEARRLDGQMDGRSP* back to topmRNA from alignment at H-paniculata_contig1654:4232..13536+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1654.3721.1 ID=mRNA_H-paniculata_contig1654.3721.1|Name=mRNA_H-paniculata_contig1654.3721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9305bp|location=Sequence derived from alignment at H-paniculata_contig1654:4232..13536+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACAGCCTGCTCTTCGTGCTGGTGCCCAATATGCTTAGGGAGACGGCCGC
ACGGTACAAGGCTTTAGTATATTTTATTTTCGTGGTCGGGGCGTCGGCCA
GCCAGCGCAAGTATGATGGCAGCACTTTACTCTACGATCCCAAGGTACTG
GCGGTGGGGTAGGATGACGACCTAAATACTTTTGTTCTGAATGACCATAC
CATCGTATACGGTAAGCGTTCAACGTTTTAGTTGCTCATGAAGGCCATGA
TGGCCTGATAACGGCTCGTGGCGAATAACGTACCAAAAATGTAGAGGTTT
CTTCACCTCCCACTGTCTGCCTAGTGCGCAATCTTTTATATTGTAGCGAT
TGTTGTCACCTTGTCGCATACATACTAGCACCGTGATCGACCTACCTAGG
CGGCGCGATCCATCCATCAGACAGTGGTGAGGCAGCACGTTGTGGCAGAC
TGCGGGAGCTTTGAGGGACAACTTGATGCGAGGCATAATTCGGCTGTAGA
CGATCTCCGGATTGAGGATGATCCCTGACAAGAATTATCTTCCGTTAGGT
ATCGTGAATAGCATCTGGCGCTGGGCGACACACAGGTTCATCTTGGGTGT
CGTGCTCCATTTGGCGCAAGCTGGAAGTCAAGTACAAAATTTTCTCCCGC
AGTTTTAGATACAAGCACACCAAGCAGTATCTCTGCTATCTGTCATCGAT
AAAACCACTCGGAAACTATTTAGCACTGTGATGACTGTCTGTATCTAACG
GTAATCCGTTTCCTGGGTGGATTGATTTCTTTTTGGCAACAGTCTGTAAC
AAGCACCCGCGGCAGGAGGAAAACTGAACTTCTGTTCCCTGTTGGGCCTG
CTCAAGTTCCCCTGGTCCCTTTACTCGAGCGCCATTTGCTCGTCCAGTTC
CTGACGAAACCCTGATGTATGCCGCCCCCCCGATGATCCATGCCGCAGGG
ACGCATGTTTCAGGTGGAATATGCAATGGAAGCGACCCGCAGAGGCCGCA
CTGTGGTCGGAGTTTGTGGAGACGGTTGCGTTGCCCTCGTAGCGAGAGAC
CCCACCTCGTCATCCTCGTGCCGGGCGGTCGCTGCCGGAGGCGTGCGGGC
GGTAGATTCACACATTGGCATAGCAGCATCCGGGTGAGAGCAGATGCAGC
TTTATCACCTTGTTATCCTCATGACAAAACTTCGCCGACAAGGGTTGGTT
ACTGTAGAAATACAGGTAAAAGAGCAGGGAAATATACAGATTTACCGCAT
TGTCTTGTACCAGGTATGCCAGTATTCTGCGAAGCTGTGTTGCGACATTG
AGTAGAATTCAGCACCAAGTGGCAATGTCAAATTCCTCTTGTCTTCCTCC
TGTCAACGTTAGGTTCGCTGCCAATTGGTGGAAGATACACCCTCAGATAT
CGCCGTGGAGGAAAACACAGAAGTGTCGCTCGTTCCACTCTGCGATATGC
ATAGTCTCTCAGTCTGTCTGCTCCGCCTCCGTGCTTCTTTGTGTTGTTGC
CTTGTTTATTTTGCGGTGTATGGTACCCAAACGTGTCAGACTGCGTAGCG
ACGTGCAGTACGTCGCAGACTGCGCTAGAACATGGTGCTCGGAGCATCGT
TTTGTTTTCGGAGAGCCCATGCCTTGCAAGATGTTGGCCAGGTGAGCGAG
GTTGAGGAGGGGCAAAAATCTACCCAGTGGCGTGCTCTACGTCAGTATAC
AACGTTGCATGTGAACATTTTTTTAGGGTTATACATGTCAAGGTATGTAG
ATATCCTTGTGGCTTGTGACACAGTAGTGCAAACACAGTAAACACAGTAA
TTTACTGTTGCTTCCTAGAGCACCAACTTATCGCACTACCGTTCAGCTTG
AAAACGTATCCTGTTGTGGACTTTCGGTCCTTGATATCTTCCGCCCTATC
GGCATCAATGAATCCTTTCAGACCGTGACCATTACTCTTACCGCCGAACG
TAATGCCGAGGTCAGGCGCAGTACTGAGATAATGAAACATGCGCTTGCAT
GTATGAAGTTTTCCGGACATGGGTCCTCTATACGACGTGCTGCTTGGTGT
ACCGCGTATGCTATATCAGGTCTAGTTCCTGTCGGGGCGTACATGAGTGA
TCCTACCATGCCTTTGTATTCAGTTGAATTGCCTCTTCTCCCATTGCTGC
TTTCTTGTACTCCTGCGCCTATGTCCGACAATACAGCCCCAATTGGTTTC
GATTTGGGGGGTTTGTCGGCCGACTCGGGTGCCAAAATCTTCAATTTTCC
CTCTACAGGGGTGGACACGTCTCGACACTCGTCAAAACCGTATCTTTTTA
GTACCTCGCGGATGTAGCTACCCTGCGAGATAGTTATGATACCGTTAGGG
CGGTCACGTCGTACTTCTACTCCCAAGATGCGCGAGAGAGTCGAAGTATT
TCATTCTAAAACGCTGAATTATGTTATGCGTGAACTCGTCTACTTCCTCA
CGACGGCCAGCAATGACCAGGTCGTCAATATACACGGCCACCAGAAGATC
TGTCTCTCTTCCATCGTCGCGAGAAAAGTACAGGCATGAGTCGGTAGTGC
AACGGTCGAGTCCTATCCCAACGAGAATATCGTCAAAGGAGTTATTCCAG
TTTCGGCCGCTCTGCTCGAGGCCATACAGGCTTTTACGTAGGCGACGCAC
AAACGGTATGTCTGGGGAGGAAGGGGAAAACTGGGGGTTAGCTTAAAAAC
AGTTCTTCCTCTACCAGGGCGTTCGAATACGCCGCATCTACGTACATGGC
TTCTAAGTCGATATCATGTTCGGCGGCCAGGCTAAAAACAATAAGTAACG
TCGACATGCGAACTACGGGGGCACTAGTTTCAAAGAAATCTTCGCCCTCC
ATTTGTGGAAAGCCTCTAGCCGCCAGTCGCGCTTTGTAGCATGCCATGCT
GCTACCCTCCTTCAATTTCCGCTTGAAATCCATTTCGTACGAATCGCCTT
CCACCCTCACGGTAACCTCCCCGGGTCTTCGCTTTCTCATGTTCCATTTT
CCACCAACGCCCCCATTCCTCCTCCATTGCCGCGCGCCATTTTCCCGCAT
CTGGACCCCTTGATGCTTCTGCCGCGGATTTCGGCTCCCCCTTAGATACC
ACCCCTGTAAGGTTGCCAGTGCCTTTCACTTTTGCCACGCGCGCGGTAGC
GCCTGGATTTTTTTCGCAGTTTTCCCTCGCTCTCGCCCGTGTTCGTATTG
GTGACCGATCTCGCGGACGCTGCGCCTCCATCCCTGACTGCTTCGTGGTA
TTCCCCCGCGACGCGGGTGCGGCTGTCCCTGCTGATAATGCGTCTTCGAC
TGCGGGCTCCGCATCCTTCATCGTGGAGTCGCCGTTACTTTCGTCACCAC
CGTCATTGCTCAAGACACTAAATGAGTTTGCGCTGGCGGCTGACAGCGAA
TATGCCGGCAATATTGGCGGCATTTGTGACGCCGACGTCCGGTCTTCTGG
TCTTCAGTGTTAGTCACGTTTCCTTGCTCGCCTCGAGCGCGGGATCGAGT
GACCGCTGGCGTGACTGGCGGTGTTGAAAAATAATTTTCCATGTGGCGCG
TCCCGTCATGCTCCTATTGTCTGTGATGATCGGTTACGAACTCCTCCTCG
TCAAGTTTCACGTTCCTGCTCATTTGCACGATCTTGGTCCTCAGGTCGTA
TACGCGATAGCTCGGGCTGTCGTCATCGTACCCCAAGAACACCCCCGCCC
ATGCTTCGTCGTCGACCTTGCGTCTCTGCTGCGACTGGAACATAACATAC
GCCGTGCAGCCGAAGACGCGAAGGTGGTCCAACTTTGGTGTCTTTCCGTG
CCATTTTTCGTACGGTATTTCTCCGTTGTGCGACCGCGTCGGGGCGCGAT
TTAGGCAGTACACTACTGAGCATACCGCTTCCGCCCAATGTCAACAACCC
ATGTTGGCGGTGATCATCTTGGTTCTCGCCATCTCGAAAATGCTGCGCCA
GCTGTGCTTCGCCACACTGTTTTGTTGCGGTGTGCAAGCGGCGGAGAACT
CCTGCCTGACGCCATTTTCCGAGCAGAATTGCCTAAAAGGTTTCCCAGTA
TATTCTCCCTAATTCGACCGAAGGCGCATAATCCGCAAACCGTTTGCCCT
CGCCACATCCCTCTCGAATTGCTTCAGGAACCATGGCGCCTCAGATTTTA
GTGGCAAGGTACAGACTTTGCGCATTCTGCTGTAGTCGCCGACGAAGATG
ATGGCGAAGCGGTACCTCCGAAGGACGTGTCCACCGGTCTGGCTATGTCG
GTGTGCATCAGCTCCAGCGGTTCGGTCTTCTGCTCTTCTCGATACTGTTT
CACAGGCTGCTTCGACGCTTTCCTCTTCTCACACGCCGAGCAGACACCGA
GCTTCCCGCTTAACTTTATGCCTTGTTGCCGCGCGACTGTGGGAAGGTCT
CGAACATGCCCAAGTCGCTCGTGTAGTAACTTGGCGTCCACCACCTGTTG
CCTCTTCTCATTTTTCTTCGGCGTGGTGCAGTCGTTGCTGAATATTCGAA
GAACCTCCACTTGTTTTCCGATGGTTCGTATTGCGGCCTGTTTCTCCACT
TCGTCCCTTACTATCATACGCAACGAATATATATTATCCTTTCGTGATGT
GTGTTTCAACGGGATCATCATCGCATCGTAATGCAACCGTCCCCGTTCCA
AACCAAATTACGCCTCCATCCCTCGGCTCACCATCCGCTCAACCGATAAA
ATACTATCTGATGCTTCAGATATATGAAACACATTGCAGAAGATGATGCG
CATGGCTCCTTCCGCAGTCCAAATTAAACCTTCCACGTCTCCTTGCCCGT
CTACATCCAACCCCCCCTTGCCCGCTGTGGCAATGAAGCTACGTACAACC
TTACAAATTTTTTGCAAGAGGTCGCGTTGCTGGGTCAGGTGATGTCCGGT
GCAGCCCGAATCAAATATCCATGGTACTTGTGATTTAGATGACTCCATCC
ATCGCGGCACACAGGCAACCGGATCAAGCAACCATCGGGGCATAAAGTGA
TGTTGGCGTACTGGGTGCAACGCTACATTATACTCTTTTACGTAGCCCTC
GTGTTCACTTGTGCCATGTCGTTTGCTGCCGAGTGGTTTCTCCTTGCGCT
TCTCACGGTACACCCACCGCCCATGTCCATGCTTGCCGCAATTCCATCAT
CGGGTGCCAAAGTCTTTCTCCGTTTCTGAAACGTCACACTCGAAAGCGGC
ATGACCGCACACGCCGCAATTAGCGCAAACCAGTCTTCGTCCCCGTCCTC
CTCTTGATGGCTCTCTCGACCGCGTAACGCCTGATTTTTTGGTCCTCGCC
GCGCTTTCATTCGCTATCACGATTTATGTGCTCGTCGGAGGGGGGTGTTC
TCGGTTTTCCGCTTGTGGTGGCCAGTACTCGGTTGGGCGCTTTGCCCATA
TGCGGCGCAATTTCATGGCGCCAGTGATCTCGAATCAGTGGTCTGAACGT
TTCATATGAAATTAGCATGCCCCATCTAATGACGGTTCGTACGATCGCGT
AATCGTCGGTCAGTCCGGCGACGATGGTGCTGCGTTTGCGGGACTCGGTC
ACCGGCTCATCAAGCATGGCCAGATTGTCCACTTTTTTTACCGCAAGAAT
GAAATGGTCCGGGTCTTGGTCTGGTGTGTCGACGGCCATGTTAGCGAGGT
CGGCGTGTAGATTCATTGCCCCCGCCTGTGTTCTCTCTTCATACTCACCC
ACCAATGCGTCATCAGCGCTTCGCCCGTCTCCTGGGGATATGTCTTGGCC
CGCAAATTGGCAGACTATCGCTTCCGCCAGTCCATCCATAGACAGCATCA
GTATGTCGAACATCTTCGCGTTTATTTCGTACCATGTGCCCCAAGTTTTT
TCTGCCTCTCGTTCAGGTCGCTCTTTCATTAGCGGTCTAATCAACAGTTT
TCTTTGGCGTCCTTTGGCGTCCTTGTAGGCCTATCTGTCCTCGTAGCTCT
TGCTCTCACAGCCTGTTTTTGAAGGTTCTTGTTTTTTTTTTCAACAATGC
TCCTCGCACCGGCTCTCTATATATCACTTAGTAACGGACTGTACTGTGCT
ATCTAGCTGAATCGATGGCTCATTAATCTGTTAAGATATGTAGTATCCTT
GTGGCTTGTGATCAGTAGTGCAAACACAGTAGTTTACTTGTTCATAGATT
ATGATGCCCAGACAAGAGTGAGACAAAGGGAATCGGTGCACCTCCCATGT
CGTGGACAATATCTTGTTCTAGAAATTCCTAAATAACCCACGAGACGTTC
CAGCTCCTGAACATCCAATAAGCAGCAAAACGCGGAACGTTCCGACTCTA
GAACATTCAAATCAATATCCCGTGCCAACCTCCCAACGGTCGATACTCTG
CGTTATCGTATCACATCCTCATTCCTCAACGATGCATCGGTCATACAATT
CAATATAAATATATTGTTCGGTTTGATCCATCAATATACCAAAATATTTC
CAGATCTATTGGCGGTAATATACTGGTGCGAGTGAAGTGAGCCCGCAGCG
CGAAACGTCAAGGGAGTGCTGGCAAGGGGGGCTCGCCGGAGGCAGAAAAA
CATGCGTTCTAGCTTCGTCATTCTTCAAAATCGAAAAGTATAAGTGCCTC
CAGAGTTGTGCACTTTCATCAAGCAACACTTTTGATTTCAAGGAAAAATA
AATAAATCAAGAGACGCTTATAGTTGAACGACAACCGCGACTTCGCAATA
TTTGTGAACAGTTTTTGGCTATTGGTGAAAATGACGAGAAAAGAGCGGGC
CATGTAGGTTGCCCTCGTTCGCTGGCGTGTCGAGAAGGGATGTATATACA
TGAGCATTGATTTATGCCACCGAAATAGAAGAGCTGAATTCAACGACAGA
GTCAGAGTCCGAATCAGATGATTCTTCGCCGCTGGCGGTACCCAGTGGCG
GTGGGCTTTGATACTAGGGGAGCTCGTGCTGCTGGTTGCCTTCCTGGGGG
GGGTAGATATACATGTGTACTGTCACGTGTACATGTGTACGGAGCAGGTT
TTGAATTGTAATAAAAACATTTGTACATCCAGTGAGAAATGACCACAATA
TATCCCATTAATCAATATATATATATATATATATATTGGCGATACAGTGT
ATCGGTATATTGGTAAATTACTGGTGCCAATACAAAACCCTGGTGGTTTT
TGTGGCAGTTGATGGAAATTTATTTAGATGGGGTGTGGCTTTATAGCGCA
TTAGACCTGCACCCGTTGTTGCGGCTGAGTATGGGCCAGTCATCCTCTTT
TCGTTCTCTCTATGCCGTGGGAAATATGTAAGTTTAAGGAAGGACACTTA
TGCGTGTGCCTTGTTATCACAGCCATAGTAGACATGTGCCCTGAAATGTG
GCACCGATGCAGAAAGTACATTTCTGTGTACTGTTGACTCGTCTTGCTTC
CCTGTGATTCAAGCACTGTTGGGTGATACGCTGTCTAGGGTACGTCGTTA
CCGTTCAATTTCATTTGCTTGCGTGTGCTTGAAGTACTGTCGTGTTAAAC
AGTATCTGGAGCACTTCGTTAGTGTTCAATCCAGGCGTTTTTTTTTTTTT
TGGTGCTCGTGGAGTGACGTTGATCGTATAGGTACTCAAAAGAAGCGGGA
CAGATTCAAGTAAAGGGGGGGTACGGACAGAACCGATACTGGTTGCTGTC
CTCAACCAATGTCGCTGAATCTCGCCTGGATGTGCTATCTGTCATTTGTT
CCTTCGTTACCTGGCAACAGGCGTCTGGCGGATCTGGTTCACTCGTGCAC
CACGCGGGGTGGGAAGAGACCACTCGCCGTCGATATCTTGCTGGCCGGTG
AGTCAAGACGAATTATCGCAGGCTTTGACCTCTTGCGTTGTGGGGGTGTT
GGACTATTTGTTACATCGTGGTGGACAGCAACTTCGAATAAGGACGATGT
ATAAAATACAAAAATATGACCATGACCCGGTAGTGAGCCTCAACGGCAGG
ATCTAGCGCGATACGTGCGCTCCAACGCGCTTCTGTTCTACCCATTCCTG
CAGCATGTGACTACTCTTGTCCTTCGACAGATTTACGTAGACCAACCTTC
CCAGTCCGAAACTTTAGTGTTATTAACTTCTGTTTCTAAATGTTGATTGC
CTTGCAAATGAGCAACCCCGTGTCTTCACCATTTCCAATTTCCAATAGAT
ACCAATCCGCCTCTGCATCGGCAAAAATAAATGAAGCACTTGCGCGTGAA
AGGAGAATATAACAGAATCTGGTTCGTACAGTGGCCATCGGGATCACTAA
GGCAACGTGTTCATATATAGCTCCACGTATCATGGACATATCATCACCTT
AACTCTAACATGCTCTGCCTTTCCCACCGGTGATGCTTCTCCAGGGGTGG
ATGGACATACGGGAGCTAGCCTTTTCCAGGTGCAGGCAACCGGAGCTTTC
CAGCGGTACCGCGCAACTGCCGTCGGCGGGGACGGAGGGACGGTAAGGGC
TCGCCTTGCTAATCCTCCGGCCTGGGTTGGCGGAGAAAAGCAGAGTGCGT
CGCCCGAAGGCGAAGGGAAAGGGGTTGATGATCAGCGAGGAAGGGACGTG
TCAGAGAACACGGAAGCGAGGGAAAAATTCAGCAGCGACGCGTCTTTGTT
GCAGAAGGCCAACGGCGGTGAAAGGGGCGTACACGATGGCTGGAGTTTTG
AAGGCAAGGGTGACGAAAACTCCGACAACAGCAGGGGCATTTTCCAAGGC
GATGGAACAACAGCCGATCGAAGTGACCCTGATGGATGGAAAAGGCGGCG
GGAGCAGCAGCGATGGCCACGACTCGCGCCGAAACAACGGCAAGCCTTGA
AACGGGCATTGGCGGCGTTGTGGAACAGTGAGAACGATAGAGGAGGACAA
TCGAGCGATGCGCCGGACGGCGGGGAGGCAATTCTCGTTCGCGGGGGTTT
AAAGGCTTCTGAGTTGTCCGCCACGATCTATGGGACGACGGAAGCTTTGT
GTGAGCTGGGCGCGAGGGGCGACGATTGGGGCGGGGGGGCTGCTGGGTTA
GATGGTGAAGATAGTGACGGAGTGCGACGGTTTGAGTGCTCGGTGGAGGA
TTGCGAGGAGATTTTGTTGGAACTGGAGGCTGAGGAGATGGAAGCTCGCC
GATTAGATGGGCAGATGGATGGTCGCAGCCCTTGATTTTCTGTGGGAAGG
GAAATCGTTGCCATATTTTACTGTTTGGAAATGTGTGTCTCAAGGTGACT
GCAGAAGAATAAGAAAATGTTGTGCTGTTACGCATTTTTTGTTATTCACG
TGCATTGCTGGTTACTGCGAATTTTTACGTCTTCGACGTTCTTGCTCTGT
CGCCC back to topCoding sequence (CDS) from alignment at H-paniculata_contig1654:4232..13536+ >mRNA_H-paniculata_contig1654.3721.1 ID=mRNA_H-paniculata_contig1654.3721.1|Name=mRNA_H-paniculata_contig1654.3721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2538bp|location=Sequence derived from alignment at H-paniculata_contig1654:4232..13536+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTAGGGAGACGGCCGCACGGTACAAGGCTTTAGTATATTTTATTTT
CGTGGTCGGGGCGTCGGCCAGCCAGCGCAAGTATGATGGCAGCACTTTAC
TCTACGATCCCAAGATGCTTAGGGAGACGGCCGCACGGTACAAGGCTTTA
GTATATTTTATTTTCGTGGTCGGGGCGTCGGCCAGCCAGCGCAAGTATGA
TGGCAGCACTTTACTCTACGATCCCAAGGGACGCATGTTTCAGGTGGAAT
ATGCAATGGAAGCGACCCGCAGAGGCCGCACTGTGGTCGGAGTTTGTGGA
GACGGTTGCGTTGCCCTCGTAGCGAGAGACCCCACCTCGTCATCCTCGTG
CCGGGCGGTCGCTGCCGGAGGCGTGCGGGCGGTAGATTCACACATTGGCA
TAGCAGCATCCGGGGACGCATGTTTCAGGTGGAATATGCAATGGAAGCGA
CCCGCAGAGGCCGCACTGTGGTCGGAGTTTGTGGAGACGGTTGCGTTGCC
CTCGTAGCGAGAGACCCCACCTCGTCATCCTCGTGCCGGGCGGTCGCTGC
CGGAGGCGTGCGGGCGGTAGATTCACACATTGGCATAGCAGCATCCGGAC
TGCGTAGCGACGTGCAGTACGTCGCAGACTGCGCTAGAACATGGTGCTCG
GAGCATCGTTTTGTTTTCGGAGAGCCCATGCCTTGCAAGATGTTGGCCAG
ACTGCGTAGCGACGTGCAGTACGTCGCAGACTGCGCTAGAACATGGTGCT
CGGAGCATCGTTTTGTTTTCGGAGAGCCCATGCCTTGCAAGATGTTGGCC
AGGCGTCTGGCGGATCTGGTTCACTCGTGCACCACGCGGGGTGGGAAGAG
ACCACTCGCCGTCGATATCTTGCTGGCCGGCGTCTGGCGGATCTGGTTCA
CTCGTGCACCACGCGGGGTGGGAAGAGACCACTCGCCGTCGATATCTTGC
TGGCCGGGGTGGATGGACATACGGGAGCTAGCCTTTTCCAGGTGCAGGCA
ACCGGAGCTTTCCAGCGGTACCGCGCAACTGCCGTCGGCGGGGACGGAGG
GACGGTAAGGGCTCGCCTTGCTAATCCTCCGGCCTGGGTTGGCGGAGAAA
AGCAGAGTGCGTCGCCCGAAGGCGAAGGGAAAGGGGTTGATGATCAGCGA
GGAAGGGACGTGTCAGAGAACACGGAAGCGAGGGAAAAATTCAGCAGCGA
CGCGTCTTTGTTGCAGAAGGCCAACGGCGGTGAAAGGGGCGTACACGATG
GCTGGAGTTTTGAAGGCAAGGGTGACGAAAACTCCGACAACAGCAGGGGC
ATTTTCCAAGGCGATGGAACAACAGCCGATCGAAGTGACCCTGATGGATG
GAAAAGGCGGCGGGAGCAGCAGCGATGGCCACGACTCGCGCCGAAACAAC
GGCAAGCCTTGAAACGGGCATTGGCGGCGTTGTGGAACAGTGAGAACGAT
AGAGGAGGACAATCGAGCGATGCGCCGGACGGCGGGGAGGCAATTCTCGT
TCGCGGGGGTTTAAAGGCTTCTGAGTTGTCCGCCACGATCTATGGGACGA
CGGAAGCTTTGTGTGAGCTGGGCGCGAGGGGCGACGATTGGGGCGGGGGG
GCTGCTGGGTTAGATGGTGAAGATAGTGACGGAGTGCGACGGTTTGAGTG
CTCGGTGGAGGATTGCGAGGAGATTTTGTTGGAACTGGAGGCTGAGGAGA
TGGAAGCTCGCCGATTAGATGGGCAGATGGATGGTCGCAGCCCTTGAGGG
TGGATGGACATACGGGAGCTAGCCTTTTCCAGGTGCAGGCAACCGGAGCT
TTCCAGCGGTACCGCGCAACTGCCGTCGGCGGGGACGGAGGGACGGTAAG
GGCTCGCCTTGCTAATCCTCCGGCCTGGGTTGGCGGAGAAAAGCAGAGTG
CGTCGCCCGAAGGCGAAGGGAAAGGGGTTGATGATCAGCGAGGAAGGGAC
GTGTCAGAGAACACGGAAGCGAGGGAAAAATTCAGCAGCGACGCGTCTTT
GTTGCAGAAGGCCAACGGCGGTGAAAGGGGCGTACACGATGGCTGGAGTT
TTGAAGGCAAGGGTGACGAAAACTCCGACAACAGCAGGGGCATTTTCCAA
GGCGATGGAACAACAGCCGATCGAAGTGACCCTGATGGATGGAAAAGGCG
GCGGGAGCAGCAGCGATGGCCACGACTCGCGCCGAAACAACGGCAAGCCT
TGAAACGGGCATTGGCGGCGTTGTGGAACAGTGAGAACGATAGAGGAGGA
CAATCGAGCGATGCGCCGGACGGCGGGGAGGCAATTCTCGTTCGCGGGGG
TTTAAAGGCTTCTGAGTTGTCCGCCACGATCTATGGGACGACGGAAGCTT
TGTGTGAGCTGGGCGCGAGGGGCGACGATTGGGGCGGGGGGGCTGCTGGG
TTAGATGGTGAAGATAGTGACGGAGTGCGACGGTTTGAGTGCTCGGTGGA
GGATTGCGAGGAGATTTTGTTGGAACTGGAGGCTGAGGAGATGGAAGCTC
GCCGATTAGATGGGCAGATGGATGGTCGCAGCCCTTGA back to top
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