mRNA_H-paniculata_contig1652.3716.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1652.3716.1
Unique NamemRNA_H-paniculata_contig1652.3716.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1652.3716.1 vs. uniprot
Match: A0A6H5L5Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Z1_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.960e-32
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 TKRICDDIKNGLKEMKLARYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVANETYVNVS 180
            TKRICD+IKNGLKEM L RYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVA+ETYVN S
Sbjct:    8 TKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVNDS 67
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BLAST of mRNA_H-paniculata_contig1652.3716.1 vs. uniprot
Match: D7FHW5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW5_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.770e-32
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 1 
Query:    1 TKRICDDIKNGLKEMKLARYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVANETYVNV 177
            TKRICD+IKNGLKEM L RYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVA+ETYVNV
Sbjct:    8 TKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVNV 66
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BLAST of mRNA_H-paniculata_contig1652.3716.1 vs. uniprot
Match: A0A507E5F5_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E5F5_9FUNG)

HSP 1 Score: 95.1 bits (235), Expect = 8.780e-24
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 TKRICDDIKNGLKEMKLARYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVANETYVNVS 180
            TK I DDIKN LKE+ L RYKY+V VVIGE RGEGVRMG RCFWD++TDNVA +T++N S
Sbjct:   55 TKEIADDIKNRLKELDLPRYKYIVNVVIGEMRGEGVRMGCRCFWDADTDNVAQDTFINDS 114
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BLAST of mRNA_H-paniculata_contig1652.3716.1 vs. uniprot
Match: A0A507FCI1_9FUNG (Uncharacterized protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507FCI1_9FUNG)

HSP 1 Score: 94.4 bits (233), Expect = 2.030e-23
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 TKRICDDIKNGLKEMKLARYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVANETYVNVS 180
            T+ I D+IKN LKE+ L RYKY+V VVIGE RGEGVRMG RCFWD++TDNVA +T++NVS
Sbjct:   53 TREIADEIKNRLKELDLPRYKYLVNVVIGEMRGEGVRMGCRCFWDADTDNVAQDTFINVS 112
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BLAST of mRNA_H-paniculata_contig1652.3716.1 vs. uniprot
Match: A0A4V1IPS8_9FUNG (Tctex-1 family-domain-containing protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4V1IPS8_9FUNG)

HSP 1 Score: 92.0 bits (227), Expect = 1.040e-22
Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    4 KRICDDIKNGLKEMKLARYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVANETYVNVS 180
            K I D++KN LKE++LARYKYVV VVIGE RGEGVRMG RCFWD++TDN+A + + NVS
Sbjct:   52 KEIADEVKNRLKELELARYKYVVNVVIGEMRGEGVRMGCRCFWDADTDNMAQDVFSNVS 110
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BLAST of mRNA_H-paniculata_contig1652.3716.1 vs. uniprot
Match: A0A6U6Z4C7_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A6U6Z4C7_9DINO)

HSP 1 Score: 92.0 bits (227), Expect = 1.400e-22
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 TKRICDDIKNGLKEMKLARYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVANETYVNVS 180
            TK++ DDIK+ LKE+   RYK VVQV IGEQRG+GVRMGSRCFWDS+TDN A+ETY N S
Sbjct:   54 TKQVADDIKDRLKELNWHRYKIVVQVAIGEQRGQGVRMGSRCFWDSDTDNFASETYSNES 113
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BLAST of mRNA_H-paniculata_contig1652.3716.1 vs. uniprot
Match: A0A507CZQ7_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CZQ7_9FUNG)

HSP 1 Score: 91.7 bits (226), Expect = 3.130e-22
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 TKRICDDIKNGLKEMKLARYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVANETYVNVS 180
            T+ I DDIKN LKEM L RYKYVV VV+GEQRGEGVR+G+RC WD++TDN+A + ++N S
Sbjct:   71 TREIADDIKNRLKEMDLKRYKYVVNVVLGEQRGEGVRIGARCLWDADTDNIAQDVFINES 130
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BLAST of mRNA_H-paniculata_contig1652.3716.1 vs. uniprot
Match: F4P0V3_BATDJ (Uncharacterized protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4P0V3_BATDJ)

HSP 1 Score: 90.5 bits (223), Expect = 4.450e-22
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 TKRICDDIKNGLKEMKLARYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVANETYVNVSNN 186
            T+ I D+IKN LKE+ L RYKYVV V +GE RGEGVRMG+RCFWD++TDN+A ++++N S N
Sbjct:   51 TREIADEIKNKLKELDLPRYKYVVHVTMGEMRGEGVRMGARCFWDADTDNIAQDSFINASVN 112
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BLAST of mRNA_H-paniculata_contig1652.3716.1 vs. uniprot
Match: A0A7S3MAW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAW9_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.110e-21
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 TKRICDDIKNGLKEMKLARYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVANETYVN 174
            TK++ DDIK+ LK++ L RYK VVQV IGEQRG+GVRMGSRCFWDS+TD+ A+ETY N
Sbjct:   55 TKQVADDIKDRLKDLVLPRYKIVVQVAIGEQRGQGVRMGSRCFWDSDTDSYASETYSN 112
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BLAST of mRNA_H-paniculata_contig1652.3716.1 vs. uniprot
Match: F2U6L1_SALR5 (Tctex1 domain-containing protein 2 n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U6L1_SALR5)

HSP 1 Score: 89.4 bits (220), Expect = 1.450e-21
Identity = 39/60 (65.00%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 TKRICDDIKNGLKEMKLARYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVANETYVNVS 180
            T+ ICD++K  LKE+KL RYK+VVQ  IGEQRGEGV++G+RC WDS+TDN+A + YVN S
Sbjct:   50 TQEICDEVKQKLKELKLPRYKFVVQGTIGEQRGEGVKVGARCLWDSDTDNLAQDVYVNDS 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1652.3716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5Z1_9PHAE1.960e-3291.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHW5_ECTSI2.770e-3293.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A507E5F5_9FUNG8.780e-2471.67Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A507FCI1_9FUNG2.030e-2370.00Uncharacterized protein n=1 Tax=Spizellomyces sp. ... [more]
A0A4V1IPS8_9FUNG1.040e-2269.49Tctex-1 family-domain-containing protein n=1 Tax=B... [more]
A0A6U6Z4C7_9DINO1.400e-2271.67Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A507CZQ7_9FUNG3.130e-2266.67Uncharacterized protein n=1 Tax=Synchytrium endobi... [more]
F4P0V3_BATDJ4.450e-2262.90Uncharacterized protein n=2 Tax=Batrachochytrium d... [more]
A0A7S3MAW9_9STRA1.110e-2170.69Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
F2U6L1_SALR51.450e-2165.00Tctex1 domain-containing protein 2 n=1 Tax=Salping... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1652contigH-paniculata_contig1652:5848..6767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue1.7e-24
Seed eggNOG ortholog2880.D7FHW5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of intraciliary retrograde transport
EggNOG OGsKOG4108@1,KOG4108@2759
Ec32 ortholog descriptionTctex-1
Ec32 orthologEc-12_006150.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929315.8652437-CDS-H-paniculata_contig1652:5847..59931622929315.8652437-CDS-H-paniculata_contig1652:5847..5993Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1652 5848..5993 -
1691480812.3607244-CDS-H-paniculata_contig1652:5847..59931691480812.3607244-CDS-H-paniculata_contig1652:5847..5993Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1652 5848..5993 -
1622929315.8769433-CDS-H-paniculata_contig1652:6727..67671622929315.8769433-CDS-H-paniculata_contig1652:6727..6767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1652 6728..6767 -
1691480812.3749232-CDS-H-paniculata_contig1652:6727..67671691480812.3749232-CDS-H-paniculata_contig1652:6727..6767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1652 6728..6767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1652.3716.1prot_H-paniculata_contig1652.3716.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1652 5848..6767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1652.3716.1

>prot_H-paniculata_contig1652.3716.1 ID=prot_H-paniculata_contig1652.3716.1|Name=mRNA_H-paniculata_contig1652.3716.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
TKRICDDIKNGLKEMKLARYKYVVQVVIGEQRGEGVRMGSRCFWDSETDN
VANETYVNVSNN
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mRNA from alignment at H-paniculata_contig1652:5848..6767-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1652.3716.1 ID=mRNA_H-paniculata_contig1652.3716.1|Name=mRNA_H-paniculata_contig1652.3716.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=920bp|location=Sequence derived from alignment at H-paniculata_contig1652:5848..6767- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAAGAGGATATGCGACGACATCAAGAATGGACTCAAAGGTGGCTGATA
TTGATCACTAGCTTTTAGTCAAGGGAACATTTTTTGCACTCATTGTCACT
CTATAGGTGTTGTGGGAGAAATATATACCCTTCATCAGCATATCAGGGTT
TATCACGCGAACCTCTCTTATACCCACCCGATACGCCTGGTGAAGCCGAT
GAGTGGACGATGGTACGATTAATTGTGTTGAAATCTGGTGGCCAGAACAG
CCTCGTCGTTGGTGTCCTTCTTATCAGTCGTCTACCTTTGGCTCCTGCTA
TGTGCAATCAGGATTCGTGAATCACCCTGATAGAGCTGTGTCACGAAGCT
CTTGCCTGTGTCTTTCACCACCATGGCTCAAGGCTTTCGTTCACGATACC
TCTACGAAGAGGAATATGTTCGATCGAAGACTACAGATGACGCCATATTA
CAGTTGATTCGCTACTTTTCACACTGACAGCGACGCAAATGTTTATTCGC
TGTACGAACAATTTCTTGTTTGGCGGTCGCATCCTCATCAGTATTGGCGA
TGCACAGATTCATCGGTGAATGATCTCTTTGAAAGGGATGCATTGCCTAC
TGGTCGCTATGTTGTGTAGATCCTAGCGTAACGCTTACAGTCACTTGTAA
CGTGGCATAGTATGAAATGCAGCTGGAACGGACTGATGTAAAACTCTAAC
TGGCCACGAATAGAAAGAAATCAATAGATTTCTTGCGCTCCGTCCCATGT
ACCTCTCCGCTGCTTCCTGGGCAGAGATGAAGCTGGCACGATACAAGTAT
GTCGTACAGGTAGTGATAGGCGAGCAGCGAGGAGAAGGAGTACGCATGGG
CAGTCGTTGTTTCTGGGACTCCGAGACAGACAACGTTGCCAACGAGACTT
ACGTCAATGTGAGCAACAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig1652:5848..6767-

>mRNA_H-paniculata_contig1652.3716.1 ID=mRNA_H-paniculata_contig1652.3716.1|Name=mRNA_H-paniculata_contig1652.3716.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig1652:5848..6767- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAAGAGGATATGCGACGACATCAAGAATGGACTCAAAGACCAAGAGGA
TATGCGACGACATCAAGAATGGACTCAAAGAGATGAAGCTGGCACGATAC
AAGTATGTCGTACAGGTAGTGATAGGCGAGCAGCGAGGAGAAGGAGTACG
CATGGGCAGTCGTTGTTTCTGGGACTCCGAGACAGACAACGTTGCCAACG
AGACTTACGTCAATGTGAGCAACAATAGATGAAGCTGGCACGATACAAGT
ATGTCGTACAGGTAGTGATAGGCGAGCAGCGAGGAGAAGGAGTACGCATG
GGCAGTCGTTGTTTCTGGGACTCCGAGACAGACAACGTTGCCAACGAGAC
TTACGTCAATGTGAGCAACAAT
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