mRNA_H-paniculata_contig16516.3714.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16516.3714.1
Unique NamemRNA_H-paniculata_contig16516.3714.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY)

HSP 1 Score: 110 bits (274), Expect = 4.130e-27
Identity = 61/127 (48.03%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    1 GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIGFGCMGSTTLFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLADNLTKGLSRVKFQILR 381
            GYVF +  GAI+WCSR+QQ  + S+TE EYVAA EA KE ++L  LL  I    + +  L+  N+SAI + K    H R KHI  R H I+E  + G + ++YV++ DQLAD LTK L  VKF  LR
Sbjct:  121 GYVFNMANGAITWCSRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKEKFQNGDIKIEYVRSEDQLADILTKPLVSVKFNKLR 247          
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: A0A060SU91_PYCCI (Uncharacterized protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SU91_PYCCI)

HSP 1 Score: 109 bits (273), Expect = 1.110e-26
Identity = 63/128 (49.22%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    4 YVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIG---FGCMGSTT----LFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLADNLTKGLSRVK 366
            YVFKL GGAISWCSRKQQ +  SSTE EYVA   A KE ++L  LL  +    F  + S      +   N+SA+ ++K S  H R KHI  R H IR+ +  G L ++YV TGDQ+AD LTK L+R K
Sbjct:  146 YVFKLGGGAISWCSRKQQSIAQSSTEAEYVALALAAKEGLWLSTLLSDLDSPVFHALSSRLQVPLILVDNQSAMALAKNSSFHDRTKHIAVRHHFIRDELERGTLTVEYVPTGDQVADVLTKSLAREK 273          
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: H3G5F6_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5F6_PHYRM)

HSP 1 Score: 104 bits (260), Expect = 1.850e-26
Identity = 54/118 (45.76%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    1 GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIGFGCMGSTTLFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLADNLTKGL 354
            GYVF LNG AISW S++Q  V  SSTE EY+A   A +E V+L +LL  +G  C+G+TT+F+ N+  I ++K    H R KHI  + H +RE V + V+ L+Y  T + +AD  TK L
Sbjct:    5 GYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHILREKVEDKVIVLEYNPTDEMIADGFTKAL 122          
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: A0A4S4L116_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4L116_9AGAM)

HSP 1 Score: 110 bits (274), Expect = 4.100e-26
Identity = 58/112 (51.79%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    1 GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIGFGCMGSTTLFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLAD 336
            G+VFK+  GAISW S+KQ     SST+ EYVA   A KE V+L  L   I   C G TTLF  N+SA+ I++    H R KHIG R H +RE V +G L LKY+ TGDQ+AD
Sbjct:  273 GFVFKVADGAISWSSKKQGSTALSSTKAEYVAGTHAAKELVWLWALFAEISLPCKGPTTLFMDNQSAMAIAENPVYHARTKHIGARHHFLRERVEDGELELKYLPTGDQMAD 384          
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: A0A8H7CY76_9AGAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H7CY76_9AGAR)

HSP 1 Score: 109 bits (273), Expect = 4.490e-26
Identity = 62/130 (47.69%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    1 GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIGFGCMGSTTLFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLADNLTKGLSRVKFQILRILL 390
            GY F L  GAISW S+KQ +VT SSTE+EYVA   A KE ++L +LL  +     G TTLF  N+ AI +S+ S  H R KHI  R H IR+ +R G  ++ Y  T D +AD  TK L+R K +  R LL
Sbjct:  230 GYTFFLGNGAISWSSKKQPIVTLSSTESEYVALTHASKELIWLRKLLSELRLLPTGPTTLFCDNQGAIVLSRDSTYHARTKHIDIRFHFIRQTIRHGHASVTYCSTHDMIADVFTKSLTRAKIEKFRDLL 359          
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM)

HSP 1 Score: 108 bits (269), Expect = 7.240e-26
Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIGFGCMGSTTLFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLADNLTKGLSRVK 366
            GYVF LNG AISW S++Q  V  SSTE EY+A   A +E V+L +LL  +G  C+G+TT F+ N+  I ++K    H R KHI  + H +RE V + V+ L+Y  T + +AD  TK L+R K
Sbjct:  179 GYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALARPK 300          
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: UPI001E1BA65C (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA65C)

HSP 1 Score: 105 bits (262), Expect = 8.850e-26
Identity = 61/127 (48.03%), Postives = 76/127 (59.84%), Query Frame = 1
Query:    1 GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIGFGCMGSTTLFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLADNLTKGLSRVKFQILR 381
            GYVF LNG AISW  +KQ+    S+TE E+VA+ EAGKE V++   L  +         LF  N+SAI I +    H R KHI  R H IRE   +GV+  KYV T +QLAD LTK L+  +FQ LR
Sbjct:   71 GYVFLLNGAAISWSGKKQKCTAQSTTEAEFVASSEAGKEAVWILRGLKELEGDVPTPMELFMDNQSAIRIIRNPELHQRTKHIDVRYHFIRELQEQGVIDAKYVNTNEQLADILTKPLAAPRFQRLR 197          
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: A0A1J3D358_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D358_NOCCA)

HSP 1 Score: 110 bits (274), Expect = 1.130e-25
Identity = 59/127 (46.46%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    1 GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIGFGCMGSTTLFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLADNLTKGLSRVKFQILR 381
            GYVF L+GGA++W SRKQ +VT SSTE EYVAA     + +++  +LG IGF      TLF  N S I +SK +  H + KHI  R H +RE  +EG++ L +  T +QLAD +TK L    FQ +R
Sbjct:  356 GYVFLLSGGAVAWSSRKQPIVTLSSTEAEYVAAATCACQAIWMKRVLGEIGFEQEDGMTLFCDNTSTIKLSKNAVMHGKSKHIRVRYHFLRELSKEGLVTLVHCNTEEQLADIMTKPLKMASFQRIR 482          
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: UPI0006A737CF (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A737CF)

HSP 1 Score: 108 bits (269), Expect = 1.220e-25
Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    1 GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIGFGCMGSTTLFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLADNLTKGLSRVKFQILR 381
            G+ F   GGA+SW S+KQ +VT S+TE EYVAA     + V++  +L  IGFG    T LF  N SAI +SK    H R KHI  R H +RE V EG+++ +Y  T +QLAD +TK +    F+ LR
Sbjct:  208 GFTFMFGGGAVSWSSKKQPIVTLSTTEAEYVAAANGACQAVWMRNMLTEIGFGQGDGTVLFCDNSSAIKLSKNLVLHGRSKHIHVRFHFLRELVNEGIISTEYCSTHEQLADIMTKPVKLEVFEKLR 334          
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Match: A0A1Y1L8J7_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1L8J7_PHOPY)

HSP 1 Score: 103 bits (258), Expect = 1.890e-25
Identity = 60/131 (45.80%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    1 GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSIGFGCMGSTTLFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLALKYVQTGDQLADNLTKGLSRVKFQILRILLV 393
            GYV    GG ISWCSRKQ +V+ SSTE EY+AA +  KE ++L  L+  +      S TL   N+SAI + K    + R KHI  R H + E VREGVL +KY  T +Q+AD  TK L + KF + + LL+
Sbjct:   50 GYVIYFCGGPISWCSRKQPIVSLSSTEAEYIAAADCVKELLFLKSLIEEL-INTKVSKTLNVDNQSAIQLMKSGQFNRRSKHIDVRFHFLCEKVREGVLEVKYCPTNNQIADIFTKALGKQKFNVFKELLL 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16516.3714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1N3K4_PHOPY4.130e-2748.03Uncharacterized protein n=2 Tax=Photinus pyralis T... [more]
A0A060SU91_PYCCI1.110e-2649.22Uncharacterized protein n=2 Tax=Pycnoporus cinnaba... [more]
H3G5F6_PHYRM1.850e-2645.76Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A4S4L116_9AGAM4.100e-2651.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H7CY76_9AGAR4.490e-2647.69Retrovirus-related Pol polyprotein from transposon... [more]
H3GB69_PHYRM7.240e-2645.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001E1BA65C8.850e-2648.03secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
A0A1J3D358_NOCCA1.130e-2546.46Retrovirus-related Pol polyprotein from transposon... [more]
UPI0006A737CF1.220e-2545.67uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A1Y1L8J7_PHOPY1.890e-2545.80Uncharacterized protein (Fragment) n=1 Tax=Photinu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16516contigH-paniculata_contig16516:37..432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score107.1
Seed ortholog evalue6.5e-21
Seed eggNOG ortholog7425.NV19274-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929315.5749779-CDS-H-paniculata_contig16516:36..4321622929315.5749779-CDS-H-paniculata_contig16516:36..432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16516 37..432 +
1691480812.1830485-CDS-H-paniculata_contig16516:36..4321691480812.1830485-CDS-H-paniculata_contig16516:36..432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16516 37..432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16516.3714.1prot_H-paniculata_contig16516.3714.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16516 37..432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16516.3714.1

>prot_H-paniculata_contig16516.3714.1 ID=prot_H-paniculata_contig16516.3714.1|Name=mRNA_H-paniculata_contig16516.3714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
GYVFKLNGGAISWCSRKQQLVTWSSTETEYVAAGEAGKETVYLGELLGSI
GFGCMGSTTLFEGNKSAINISKGSGAHCRIKHIGGRSHGIREWVREGVLA
LKYVQTGDQLADNLTKGLSRVKFQILRILLV*
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mRNA from alignment at H-paniculata_contig16516:37..432+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16516.3714.1 ID=mRNA_H-paniculata_contig16516.3714.1|Name=mRNA_H-paniculata_contig16516.3714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=396bp|location=Sequence derived from alignment at H-paniculata_contig16516:37..432+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATATGTTTTCAAACTAAACGGTGGTGCGATAAGTTGGTGCTCTAGGAA GCAACAGTTAGTCACGTGGTCCAGTACAGAGACAGAGTACGTTGCTGCAG GAGAAGCGGGAAAGGAGACGGTGTATCTTGGGGAGTTACTAGGATCGATA GGTTTCGGATGCATGGGGAGCACGACATTGTTTGAGGGCAATAAATCAGC TATCAATATCAGTAAGGGATCTGGCGCACATTGCAGGATAAAACACATCG GAGGGCGCTCGCACGGAATTCGAGAGTGGGTTCGGGAAGGAGTATTGGCG TTGAAATACGTGCAGACCGGCGACCAACTTGCTGACAATTTAACGAAAGG ACTGAGCAGAGTAAAGTTTCAGATACTGAGAATTTTACTCGTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig16516:37..432+

>mRNA_H-paniculata_contig16516.3714.1 ID=mRNA_H-paniculata_contig16516.3714.1|Name=mRNA_H-paniculata_contig16516.3714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig16516:37..432+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATATGTTTTCAAACTAAACGGTGGTGCGATAAGTTGGTGCTCTAGGAA
GCAACAGTTAGTCACGTGGTCCAGTACAGAGACAGAGTACGTTGCTGCAG
GAGAAGCGGGAAAGGAGACGGTGTATCTTGGGGAGTTACTAGGATCGATA
GGTTTCGGATGCATGGGGAGCACGACATTGTTTGAGGGCAATAAATCAGC
TATCAATATCAGTAAGGGATCTGGCGCACATTGCAGGATAAAACACATCG
GAGGGCGCTCGCACGGAATTCGAGAGTGGGTTCGGGAAGGAGTATTGGCG
TTGAAATACGTGCAGACCGGCGACCAACTTGCTGACAATTTAACGAAAGG
ACTGAGCAGAGTAAAGTTTCAGATACTGAGAATTTTACTCGTATGAGGAT
ATGTTTTCAAACTAAACGGTGGTGCGATAAGTTGGTGCTCTAGGAAGCAA
CAGTTAGTCACGTGGTCCAGTACAGAGACAGAGTACGTTGCTGCAGGAGA
AGCGGGAAAGGAGACGGTGTATCTTGGGGAGTTACTAGGATCGATAGGTT
TCGGATGCATGGGGAGCACGACATTGTTTGAGGGCAATAAATCAGCTATC
AATATCAGTAAGGGATCTGGCGCACATTGCAGGATAAAACACATCGGAGG
GCGCTCGCACGGAATTCGAGAGTGGGTTCGGGAAGGAGTATTGGCGTTGA
AATACGTGCAGACCGGCGACCAACTTGCTGACAATTTAACGAAAGGACTG
AGCAGAGTAAAGTTTCAGATACTGAGAATTTTACTCGTATGA
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