mRNA_H-paniculata_contig16513.3713.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16513.3713.1
Unique NamemRNA_H-paniculata_contig16513.3713.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: D7FQY3_ECTSI (AP-3 complex subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQY3_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 9.830e-41
Identity = 75/79 (94.94%), Postives = 79/79 (100.00%), Query Frame = 1
Query:   25 QDVDKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSNQV 261
            +DVDKLKGMKWLLAMVSKGRDVS+FFSDVVKNMAVRSVEVKKMVYIYLVHYAD+DAQCRELALLSINSFQNDLRGSNQ+
Sbjct:   28 KDVDKLKGMKWLLAMVSKGRDVSEFFSDVVKNMAVRSVEVKKMVYIYLVHYADNDAQCRELALLSINSFQNDLRGSNQL 106          
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: A0A836CCL9_9STRA (AP-3 complex subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCL9_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.580e-33
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1
Query:   25 QDVDKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSNQV 261
            ++ DKLKGMKWLLAM+SKG+D+SDFFSDVVKN+ VRSVEVKKMVYIYL+HYAD +A CRELALLSINSFQ DL  SNQ+
Sbjct:   40 REPDKLKGMKWLLAMISKGKDMSDFFSDVVKNVVVRSVEVKKMVYIYLMHYADANANCRELALLSINSFQKDLAASNQL 118          
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: A0A7S2DHK3_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHK3_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.530e-33
Identity = 64/82 (78.05%), Postives = 72/82 (87.80%), Query Frame = 1
Query:   16 VVSQDVDKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSNQV 261
            V S+D +K KGMKWLLAM+SKGRD SDFFSDVVKN+ V+SVEVKKMVY+YLVHYAD +A CRELALLSINSFQ DL  SNQ+
Sbjct:   51 VSSKDYEKAKGMKWLLAMLSKGRDASDFFSDVVKNVVVKSVEVKKMVYMYLVHYADANANCRELALLSINSFQKDLAASNQL 132          
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: A0A7R9U6F4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6F4_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.260e-32
Identity = 61/76 (80.26%), Postives = 66/76 (86.84%), Query Frame = 1
Query:   34 DKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSNQV 261
            D LKGMKWLLAM+SKGR+VSDFF  VVKN+  +SVEVKKMVYIYLVHYADH A CRELALLSINSFQ DL  SNQ+
Sbjct:   49 DLLKGMKWLLAMISKGRNVSDFFPAVVKNVIAKSVEVKKMVYIYLVHYADHSAACRELALLSINSFQKDLAASNQL 124          
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: A0A7S2UYV1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYV1_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.410e-31
Identity = 61/79 (77.22%), Postives = 70/79 (88.61%), Query Frame = 1
Query:   25 QDVDKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSNQV 261
            +D++K+KGMKWLLAM+SKGRDVS+FF DVVKN+ V  VEVKKMVY+YLVHYAD DAQ RELALLSINSFQ DL  SNQ+
Sbjct:   54 KDLEKVKGMKWLLAMMSKGRDVSEFFPDVVKNVVVNHVEVKKMVYMYLVHYADFDAQARELALLSINSFQKDLAASNQL 132          
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: A0A7S2SUN3_9STRA (AP-3 complex subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUN3_9STRA)

HSP 1 Score: 124 bits (311), Expect = 5.080e-31
Identity = 60/82 (73.17%), Postives = 71/82 (86.59%), Query Frame = 1
Query:   16 VVSQDVDKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSNQV 261
            + S++ +K KGMKWLLAM+SKG D S+FFSDVVKN+AV+ VEVKKMVY+YLVHYAD +A CRELALLSINSFQ DL  SNQ+
Sbjct:   51 MASKEYEKAKGMKWLLAMMSKGSDASEFFSDVVKNVAVKGVEVKKMVYMYLVHYADANATCRELALLSINSFQKDLAASNQL 132          
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: A0A8J2WFS6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WFS6_9STRA)

HSP 1 Score: 123 bits (309), Expect = 9.350e-31
Identity = 59/79 (74.68%), Postives = 68/79 (86.08%), Query Frame = 1
Query:   25 QDVDKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSNQV 261
            +D DK+KGMKWLLAM+SKGRD S+FFSDVVKN+  +SVEVKKMVY+YL HY D + QCRELALLSINSFQ DL  SNQ+
Sbjct:   42 KDYDKVKGMKWLLAMMSKGRDASEFFSDVVKNVVAKSVEVKKMVYMYLSHYCDFNHQCRELALLSINSFQKDLAASNQL 120          
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: A0A7S3XL87_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL87_HETAK)

HSP 1 Score: 118 bits (295), Expect = 1.380e-30
Identity = 56/80 (70.00%), Postives = 69/80 (86.25%), Query Frame = 1
Query:   22 SQDVDKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSNQV 261
            +++ +K+KGMKWLLAM+SKGRDVS+FF+DVVK +    VEVKKMVY++LVHYADH+  CRELALLSINSFQ DL  SNQ+
Sbjct:   30 TKESEKVKGMKWLLAMMSKGRDVSEFFTDVVKAVIAAHVEVKKMVYMFLVHYADHNDSCRELALLSINSFQKDLAASNQL 109          
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: A0A7S3H4B4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4B4_9STRA)

HSP 1 Score: 119 bits (297), Expect = 5.120e-30
Identity = 56/77 (72.73%), Postives = 67/77 (87.01%), Query Frame = 1
Query:   25 QDVDKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSN 255
            Q+ DKLKGMK LLAM+SKG+D+ +FF DVVKN+ VRS+EVKKMVYIYLVHYAD +  CRE+ALLSINSFQ D+ G+N
Sbjct:   54 QEADKLKGMKLLLAMLSKGKDIPEFFPDVVKNVVVRSIEVKKMVYIYLVHYADFNDSCREIALLSINSFQKDMSGTN 130          
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: A0A2R5GN16_9STRA (AP-3 complex subunit beta n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GN16_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.000e-28
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 1
Query:   34 DKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSN 255
            ++ + MKWLLAMVSKGRDVS FF DVVKN+ VRSVE+KK+VY+YL+HYADHDA CR+LALLSINSFQ DL   N
Sbjct:   37 ERTQAMKWLLAMVSKGRDVSQFFPDVVKNVVVRSVELKKLVYVYLMHYADHDATCRDLALLSINSFQKDLADGN 110          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQY3_ECTSI9.830e-4194.94AP-3 complex subunit beta n=2 Tax=Ectocarpus TaxID... [more]
A0A836CCL9_9STRA2.580e-3379.75AP-3 complex subunit beta n=1 Tax=Tribonema minus ... [more]
A0A7S2DHK3_9STRA3.530e-3378.05Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7R9U6F4_9STRA3.260e-3280.26Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2UYV1_9STRA1.410e-3177.22Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2SUN3_9STRA5.080e-3173.17AP-3 complex subunit beta n=1 Tax=Rhizochromulina ... [more]
A0A8J2WFS6_9STRA9.350e-3174.68Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3XL87_HETAK1.380e-3070.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3H4B4_9STRA5.120e-3072.73Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A2R5GN16_9STRA1.000e-2874.32AP-3 complex subunit beta n=1 Tax=Hondaea fermenta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16513contigH-paniculata_contig16513:186..470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.8
Seed ortholog evalue1.7e-34
Seed eggNOG ortholog2880.D7FQY3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5096@1,KOG1060@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size285
Cds size285
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929315.5232263-CDS-H-paniculata_contig16513:185..4701622929315.5232263-CDS-H-paniculata_contig16513:185..470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16513 186..470 +
1691480812.1731412-CDS-H-paniculata_contig16513:185..4701691480812.1731412-CDS-H-paniculata_contig16513:185..470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16513 186..470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16513.3713.1prot_H-paniculata_contig16513.3713.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16513 186..470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16513.3713.1

>prot_H-paniculata_contig16513.3713.1 ID=prot_H-paniculata_contig16513.3713.1|Name=mRNA_H-paniculata_contig16513.3713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
IQAARVVSQDVDKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKK
MVYIYLVHYADHDAQCRELALLSINSFQNDLRGSNQVQMEGAPV*
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mRNA from alignment at H-paniculata_contig16513:186..470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16513.3713.1 ID=mRNA_H-paniculata_contig16513.3713.1|Name=mRNA_H-paniculata_contig16513.3713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=285bp|location=Sequence derived from alignment at H-paniculata_contig16513:186..470+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCAAGCTGCCCGCGTTGTTTCCCAGGATGTTGACAAACTGAAAGGGAT GAAGTGGCTATTGGCCATGGTGAGTAAGGGACGAGACGTGAGCGACTTCT TCTCAGATGTGGTGAAGAACATGGCCGTTCGCTCCGTAGAGGTGAAAAAG ATGGTGTACATTTACCTCGTCCACTACGCCGACCATGACGCCCAGTGCCG CGAGCTAGCTCTTCTCTCCATCAACTCTTTTCAGAACGACCTGCGAGGCT CCAACCAGGTACAGATGGAGGGTGCTCCGGTTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig16513:186..470+

>mRNA_H-paniculata_contig16513.3713.1 ID=mRNA_H-paniculata_contig16513.3713.1|Name=mRNA_H-paniculata_contig16513.3713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig16513:186..470+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCAAGCTGCCCGCGTTGTTTCCCAGGATGTTGACAAACTGAAAGGGAT
GAAGTGGCTATTGGCCATGGTGAGTAAGGGACGAGACGTGAGCGACTTCT
TCTCAGATGTGGTGAAGAACATGGCCGTTCGCTCCGTAGAGGTGAAAAAG
ATGGTGTACATTTACCTCGTCCACTACGCCGACCATGACGCCCAGTGCCG
CGAGCTAGCTCTTCTCTCCATCAACTCTTTTCAGAACGACCTGCGAGGCT
CCAACCAGGTACAGATGGAGGGTGCTCCGGTTTAAATTCAAGCTGCCCGC
GTTGTTTCCCAGGATGTTGACAAACTGAAAGGGATGAAGTGGCTATTGGC
CATGGTGAGTAAGGGACGAGACGTGAGCGACTTCTTCTCAGATGTGGTGA
AGAACATGGCCGTTCGCTCCGTAGAGGTGAAAAAGATGGTGTACATTTAC
CTCGTCCACTACGCCGACCATGACGCCCAGTGCCGCGAGCTAGCTCTTCT
CTCCATCAACTCTTTTCAGAACGACCTGCGAGGCTCCAACCAGGTACAGA
TGGAGGGTGCTCCGGTTTAA
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