mRNA_H-paniculata_contig16513.3713.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: D7FQY3_ECTSI (AP-3 complex subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQY3_ECTSI) HSP 1 Score: 152 bits (383), Expect = 9.830e-41 Identity = 75/79 (94.94%), Postives = 79/79 (100.00%), Query Frame = 1
Query: 25 QDVDKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSNQV 261
+DVDKLKGMKWLLAMVSKGRDVS+FFSDVVKNMAVRSVEVKKMVYIYLVHYAD+DAQCRELALLSINSFQNDLRGSNQ+
Sbjct: 28 KDVDKLKGMKWLLAMVSKGRDVSEFFSDVVKNMAVRSVEVKKMVYIYLVHYADNDAQCRELALLSINSFQNDLRGSNQL 106
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: A0A836CCL9_9STRA (AP-3 complex subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCL9_9STRA) HSP 1 Score: 130 bits (328), Expect = 2.580e-33 Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1
Query: 25 QDVDKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSNQV 261
++ DKLKGMKWLLAM+SKG+D+SDFFSDVVKN+ VRSVEVKKMVYIYL+HYAD +A CRELALLSINSFQ DL SNQ+
Sbjct: 40 REPDKLKGMKWLLAMISKGKDMSDFFSDVVKNVVVRSVEVKKMVYIYLMHYADANANCRELALLSINSFQKDLAASNQL 118
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: A0A7S2DHK3_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHK3_9STRA) HSP 1 Score: 130 bits (327), Expect = 3.530e-33 Identity = 64/82 (78.05%), Postives = 72/82 (87.80%), Query Frame = 1
Query: 16 VVSQDVDKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSNQV 261
V S+D +K KGMKWLLAM+SKGRD SDFFSDVVKN+ V+SVEVKKMVY+YLVHYAD +A CRELALLSINSFQ DL SNQ+
Sbjct: 51 VSSKDYEKAKGMKWLLAMLSKGRDASDFFSDVVKNVVVKSVEVKKMVYMYLVHYADANANCRELALLSINSFQKDLAASNQL 132
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: A0A7R9U6F4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6F4_9STRA) HSP 1 Score: 124 bits (311), Expect = 3.260e-32 Identity = 61/76 (80.26%), Postives = 66/76 (86.84%), Query Frame = 1
Query: 34 DKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSNQV 261
D LKGMKWLLAM+SKGR+VSDFF VVKN+ +SVEVKKMVYIYLVHYADH A CRELALLSINSFQ DL SNQ+
Sbjct: 49 DLLKGMKWLLAMISKGRNVSDFFPAVVKNVIAKSVEVKKMVYIYLVHYADHSAACRELALLSINSFQKDLAASNQL 124
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: A0A7S2UYV1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYV1_9STRA) HSP 1 Score: 125 bits (315), Expect = 1.410e-31 Identity = 61/79 (77.22%), Postives = 70/79 (88.61%), Query Frame = 1
Query: 25 QDVDKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSNQV 261
+D++K+KGMKWLLAM+SKGRDVS+FF DVVKN+ V VEVKKMVY+YLVHYAD DAQ RELALLSINSFQ DL SNQ+
Sbjct: 54 KDLEKVKGMKWLLAMMSKGRDVSEFFPDVVKNVVVNHVEVKKMVYMYLVHYADFDAQARELALLSINSFQKDLAASNQL 132
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: A0A7S2SUN3_9STRA (AP-3 complex subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUN3_9STRA) HSP 1 Score: 124 bits (311), Expect = 5.080e-31 Identity = 60/82 (73.17%), Postives = 71/82 (86.59%), Query Frame = 1
Query: 16 VVSQDVDKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSNQV 261
+ S++ +K KGMKWLLAM+SKG D S+FFSDVVKN+AV+ VEVKKMVY+YLVHYAD +A CRELALLSINSFQ DL SNQ+
Sbjct: 51 MASKEYEKAKGMKWLLAMMSKGSDASEFFSDVVKNVAVKGVEVKKMVYMYLVHYADANATCRELALLSINSFQKDLAASNQL 132
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: A0A8J2WFS6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WFS6_9STRA) HSP 1 Score: 123 bits (309), Expect = 9.350e-31 Identity = 59/79 (74.68%), Postives = 68/79 (86.08%), Query Frame = 1
Query: 25 QDVDKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSNQV 261
+D DK+KGMKWLLAM+SKGRD S+FFSDVVKN+ +SVEVKKMVY+YL HY D + QCRELALLSINSFQ DL SNQ+
Sbjct: 42 KDYDKVKGMKWLLAMMSKGRDASEFFSDVVKNVVAKSVEVKKMVYMYLSHYCDFNHQCRELALLSINSFQKDLAASNQL 120
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: A0A7S3XL87_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL87_HETAK) HSP 1 Score: 118 bits (295), Expect = 1.380e-30 Identity = 56/80 (70.00%), Postives = 69/80 (86.25%), Query Frame = 1
Query: 22 SQDVDKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSNQV 261
+++ +K+KGMKWLLAM+SKGRDVS+FF+DVVK + VEVKKMVY++LVHYADH+ CRELALLSINSFQ DL SNQ+
Sbjct: 30 TKESEKVKGMKWLLAMMSKGRDVSEFFTDVVKAVIAAHVEVKKMVYMFLVHYADHNDSCRELALLSINSFQKDLAASNQL 109
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: A0A7S3H4B4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4B4_9STRA) HSP 1 Score: 119 bits (297), Expect = 5.120e-30 Identity = 56/77 (72.73%), Postives = 67/77 (87.01%), Query Frame = 1
Query: 25 QDVDKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSN 255
Q+ DKLKGMK LLAM+SKG+D+ +FF DVVKN+ VRS+EVKKMVYIYLVHYAD + CRE+ALLSINSFQ D+ G+N
Sbjct: 54 QEADKLKGMKLLLAMLSKGKDIPEFFPDVVKNVVVRSIEVKKMVYIYLVHYADFNDSCREIALLSINSFQKDMSGTN 130
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Match: A0A2R5GN16_9STRA (AP-3 complex subunit beta n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GN16_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.000e-28 Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 1
Query: 34 DKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKMVYIYLVHYADHDAQCRELALLSINSFQNDLRGSN 255
++ + MKWLLAMVSKGRDVS FF DVVKN+ VRSVE+KK+VY+YL+HYADHDA CR+LALLSINSFQ DL N
Sbjct: 37 ERTQAMKWLLAMVSKGRDVSQFFPDVVKNVVVRSVELKKLVYVYLMHYADHDATCRDLALLSINSFQKDLADGN 110 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16513.3713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16513.3713.1 >prot_H-paniculata_contig16513.3713.1 ID=prot_H-paniculata_contig16513.3713.1|Name=mRNA_H-paniculata_contig16513.3713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp IQAARVVSQDVDKLKGMKWLLAMVSKGRDVSDFFSDVVKNMAVRSVEVKKback to top mRNA from alignment at H-paniculata_contig16513:186..470+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16513.3713.1 ID=mRNA_H-paniculata_contig16513.3713.1|Name=mRNA_H-paniculata_contig16513.3713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=285bp|location=Sequence derived from alignment at H-paniculata_contig16513:186..470+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16513:186..470+ >mRNA_H-paniculata_contig16513.3713.1 ID=mRNA_H-paniculata_contig16513.3713.1|Name=mRNA_H-paniculata_contig16513.3713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig16513:186..470+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |