mRNA_H-paniculata_contig1651.3710.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 115 bits (288), Expect = 1.850e-28 Identity = 64/156 (41.03%), Postives = 98/156 (62.82%), Query Frame = 1
Query: 1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVMESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNVGY 468
+ FAD+D+A+ + R S+S G V G +SWFSRTQ+ T+EA+YV+L D++ E LFLRQV+ F++ + I ++ED +GAI +A N S+ ++HI+V+H IR V ++ I +VES QH LT+ L+ FE H N +M++ Y
Sbjct: 100 MEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECHRNYVMSMDY 255
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5K399_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K399_9PHAE) HSP 1 Score: 109 bits (272), Expect = 2.050e-27 Identity = 66/158 (41.77%), Postives = 94/158 (59.49%), Query Frame = 1
Query: 1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVM-ESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNVGYE 471
+ FAD+D+A + R S+SEG V G ISW SRTQ+ T+EA+YV+L D++ E LFLR+V F++ + I + ED +GAI +A N S+ ++HI+V+H IR V + I +VES QH G LT+ +FE H N M+VG E
Sbjct: 1 MEVFADADYARKAADRRSVSEGLVMWGGGCISWLSRTQKCVTLSTTEAEYVSLADVMKKEVLFLRKVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKGISIFHVESAYQHAGFLTKAFHVGNFEFHRNFAMSVGQE 158
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE) HSP 1 Score: 111 bits (277), Expect = 9.270e-27 Identity = 65/157 (41.40%), Postives = 93/157 (59.24%), Query Frame = 1
Query: 1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVMESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNVGYE 471
+ FAD+D+A+ + R S+S G V ISWFSRTQ+ T+EA+YV+L D++ E LFLRQV F++ + I + ED +GAI +A N S+ ++H +V+H I V ++ I YVES QH LT+ L FE H N +M+VG E
Sbjct: 139 MEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISIFYVESAYQHADFLTKALHFGDFEFHRNFVMSVGQE 295
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5L4G0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G0_9PHAE) HSP 1 Score: 112 bits (280), Expect = 8.450e-26 Identity = 64/157 (40.76%), Postives = 98/157 (62.42%), Query Frame = 1
Query: 1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVMESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNVGYE 471
+ FAD+D+A+ + R +S G V +G ISWFSRTQE T++A+YV+L+D++ E LFLRQV+ F++ + I + ED +GAI +A N +S+ ++HI+V+H IR V ++ I +VES QH LT+ L+ E H +M+VG E
Sbjct: 614 MEVFADADYASKAADRRYVSGGLVICAGGCISWFSRTQECVTLSTTKAEYVSLVDVMKEVLFLRQVRRFMLPEAGMPCIPVFEDNQGAIQLAQNPNSNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALNAGDVEFHRIFVMSVGQE 770
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 109 bits (273), Expect = 2.650e-25 Identity = 63/154 (40.91%), Postives = 93/154 (60.39%), Query Frame = 1
Query: 1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVMESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNV 462
+ F D+D+A+ + R S+S G V G ISWFSRTQ+ T+EA+YV+L D++ E LFLRQV F++ + I + ED +GAI +A N S+ ++HI+V+H IR V ++ I +VES QH LT+ L FE H N +M++
Sbjct: 284 MEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 437
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5L0C9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C9_9PHAE) HSP 1 Score: 110 bits (274), Expect = 5.490e-25 Identity = 64/154 (41.56%), Postives = 94/154 (61.04%), Query Frame = 1
Query: 1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVMESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNV 462
I FAD+D+A+ + R S+S G V G ISWFSRTQ+ T+EA+YV+L D++ E LFLRQV F++ + I + ED +GAI +A N S+ ++HI+V+H IR V ++ I +VES Q+ LT+ L FE H N +M++
Sbjct: 743 IEVFADADYASKAADRRSVSGGLVICGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMSCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQYADFLTKALHAGDFEFHRNYVMSM 896
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 109 bits (273), Expect = 6.480e-25 Identity = 63/154 (40.91%), Postives = 93/154 (60.39%), Query Frame = 1
Query: 1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVMESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNV 462
+ F D+D+A+ + R S+S G V G ISWFSRTQ+ T+EA+YV+L D++ E LFLRQV F++ + I + ED +GAI +A N S+ ++HI+V+H IR V ++ I +VES QH LT+ L FE H N +M++
Sbjct: 458 MEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 611
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE) HSP 1 Score: 109 bits (273), Expect = 7.670e-25 Identity = 63/157 (40.13%), Postives = 94/157 (59.87%), Query Frame = 1
Query: 1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVMESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNVGYE 471
+ F D+D+A+ + R S+S G V G ISWFSRTQ+ T+EA+YV++ D++ E LFLR+V F++ + I + ED + A+ +A N S+ ++HI+V+H IR V ++ I +VES QH LT+ L FE H N +MNVG E
Sbjct: 975 MEVFGDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSVADVMKELLFLRKVWRFMLPEAGMPCIPVFEDNQRALQLAQNPISNSNSKHIDVRHHSIRELVGREEISIFHVESAYQHADFLTKALHVGDFEFHRNFVMNVGQE 1131
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.050e-24 Identity = 63/154 (40.91%), Postives = 93/154 (60.39%), Query Frame = 1
Query: 1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVMESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNV 462
+ F D+D+A+ + R S+S G V G ISWFSRTQ+ T+EA+YV+L D++ E LFLRQV F++ + I + ED +GAI +A N S+ ++HI+V+H IR V ++ I +VES QH LT+ L FE H N +M++
Sbjct: 979 MEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDFEFHRNYVMSM 1132
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE) HSP 1 Score: 107 bits (268), Expect = 1.250e-24 Identity = 60/155 (38.71%), Postives = 94/155 (60.65%), Query Frame = 1
Query: 1 IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYVTLLDIVMESLFLRQVQAFIMLTLEIYPIDIMEDIEGAITMANNRHSSKRTRHINVKHRIIRGSVDEGKVRIIYVESGDQHTGVLTRPLDTTSFEKHVNALMNVG 465
++ +AD+D AT + R S+S G V G A+SWFSRTQ+ T+EA+YV L D+V E LFLRQ F++ + + I I ED +GAI +A N S+ ++H++V+H ++R V+ ++ +I+V Q LT+ L +FE H +MN+
Sbjct: 275 LQGYADADFATKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQFWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHVDVRHHLVRELVERKEISVIHVPRRYQRADFLTKSLPKDAFESHREFVMNLA 429 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1651.3710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1651.3710.1 >prot_H-paniculata_contig1651.3710.1 ID=prot_H-paniculata_contig1651.3710.1|Name=mRNA_H-paniculata_contig1651.3710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp IRAFADSDHATCSDTRHSMSEGGVNLSGSAISWFSRTQETTAAGTSEADYback to top mRNA from alignment at H-paniculata_contig1651:15404..15880+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1651.3710.1 ID=mRNA_H-paniculata_contig1651.3710.1|Name=mRNA_H-paniculata_contig1651.3710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=477bp|location=Sequence derived from alignment at H-paniculata_contig1651:15404..15880+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1651:15404..15880+ >mRNA_H-paniculata_contig1651.3710.1 ID=mRNA_H-paniculata_contig1651.3710.1|Name=mRNA_H-paniculata_contig1651.3710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig1651:15404..15880+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |