mRNA_H-paniculata_contig16505.3709.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16505.3709.1
Unique NamemRNA_H-paniculata_contig16505.3709.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16505.3709.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.210e-13
Identity = 34/77 (44.16%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:  106 MEPGQDPDDFFFVLDGCRDLLADMGQPVHDERYEDIILQALPAEYERIRIASYEKRDFGLDDIRHMIHTMYVDSLSR 336
            M  G+DPD FF  ++  R    DM + + DER+ED+ILQA+  +Y+ +R  S+  R FGL++I+  + +MY+DSLSR
Sbjct:    1 MAQGEDPDGFFITVEDVRQRPKDMVEIISDERFEDVILQAISNDYDYVRPTSFRVRHFGLEEIKTTMKSMYIDSLSR 77
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BLAST of mRNA_H-paniculata_contig16505.3709.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.680e-10
Identity = 36/110 (32.73%), Postives = 58/110 (52.73%), Query Frame = 1 
Query:    7 GNGRAAWEALTEKYDSHPKEAQRACHETLVNTKMEPGQDPDDFFFVLDGCRDLLADMGQPVHDERYEDIILQALPAEYERIRIASYEKRDFGLDDIRHMIHTMYVDSLSR 336
            G+G+AA++ L   Y+    E  RA  E L+NT MEP Q+PDD+F      R     MG+ + D  + D  +     EY+ +++  Y   DF +D ++  +  M++D  SR
Sbjct:   91 GDGQAAFQELNLNYNKVTDEVIRATMEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSR 200
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BLAST of mRNA_H-paniculata_contig16505.3709.1 vs. uniprot
Match: A0A6H5L4Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y1_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.200e-5
Identity = 23/77 (29.87%), Postives = 42/77 (54.55%), Query Frame = 1 
Query:  106 MEPGQDPDDFFFVLDGCRDLLADMGQPVHDERYEDIILQALPAEYERIRIASYEKRDFGLDDIRHMIHTMYVDSLSR 336
            MEPG +PDDFF+     R  L  MG+ + D R++DI +Q    +Y+ I++  +    F +  ++  +  +++D   R
Sbjct:    1 MEPGDNPDDFFYKQHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMR 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16505.3709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JWF9_9PHAE3.210e-1344.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KW66_9PHAE1.680e-1032.73CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L4Y1_9PHAE1.200e-529.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16505contigH-paniculata_contig16505:1177..1536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929315.300187-CDS-H-paniculata_contig16505:1176..15361622929315.300187-CDS-H-paniculata_contig16505:1176..1536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16505 1177..1536 -
1691480812.0577753-CDS-H-paniculata_contig16505:1176..15361691480812.0577753-CDS-H-paniculata_contig16505:1176..1536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16505 1177..1536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16505.3709.1prot_H-paniculata_contig16505.3709.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16505 1177..1536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16505.3709.1

>prot_H-paniculata_contig16505.3709.1 ID=prot_H-paniculata_contig16505.3709.1|Name=mRNA_H-paniculata_contig16505.3709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
GPGNGRAAWEALTEKYDSHPKEAQRACHETLVNTKMEPGQDPDDFFFVLD
GCRDLLADMGQPVHDERYEDIILQALPAEYERIRIASYEKRDFGLDDIRH
MIHTMYVDSLSRPAITTPVA
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mRNA from alignment at H-paniculata_contig16505:1177..1536-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16505.3709.1 ID=mRNA_H-paniculata_contig16505.3709.1|Name=mRNA_H-paniculata_contig16505.3709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig16505:1177..1536- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACCTGGAAACGGACGGGCGGCTTGGGAGGCTCTGACGGAAAAGTACGA
CAGTCACCCAAAGGAAGCTCAGAGGGCCTGCCACGAAACGTTGGTCAACA
CGAAGATGGAGCCCGGCCAGGACCCCGATGACTTCTTTTTCGTCTTGGAC
GGATGCCGCGACCTTCTCGCAGACATGGGGCAGCCGGTGCACGACGAGAG
GTATGAGGACATTATCCTGCAGGCTCTCCCCGCTGAGTACGAGAGGATTC
GCATTGCCAGCTATGAAAAGCGGGATTTTGGCCTGGACGACATCCGGCAC
ATGATCCACACTATGTATGTCGACAGCCTTTCACGTCCTGCAATCACCAC
GCCGGTCGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig16505:1177..1536-

>mRNA_H-paniculata_contig16505.3709.1 ID=mRNA_H-paniculata_contig16505.3709.1|Name=mRNA_H-paniculata_contig16505.3709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig16505:1177..1536- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACCTGGAAACGGACGGGCGGCTTGGGAGGCTCTGACGGAAAAGTACGA
CAGTCACCCAAAGGAAGCTCAGAGGGCCTGCCACGAAACGTTGGTCAACA
CGAAGATGGAGCCCGGCCAGGACCCCGATGACTTCTTTTTCGTCTTGGAC
GGATGCCGCGACCTTCTCGCAGACATGGGGCAGCCGGTGCACGACGAGAG
GTATGAGGACATTATCCTGCAGGCTCTCCCCGCTGAGTACGAGAGGATTC
GCATTGCCAGCTATGAAAAGCGGGATTTTGGCCTGGACGACATCCGGCAC
ATGATCCACACTATGTATGTCGACAGCCTTTCACGTCCTGCAATCACCAC
GCCGGTCGCAGGACCTGGAAACGGACGGGCGGCTTGGGAGGCTCTGACGG
AAAAGTACGACAGTCACCCAAAGGAAGCTCAGAGGGCCTGCCACGAAACG
TTGGTCAACACGAAGATGGAGCCCGGCCAGGACCCCGATGACTTCTTTTT
CGTCTTGGACGGATGCCGCGACCTTCTCGCAGACATGGGGCAGCCGGTGC
ACGACGAGAGGTATGAGGACATTATCCTGCAGGCTCTCCCCGCTGAGTAC
GAGAGGATTCGCATTGCCAGCTATGAAAAGCGGGATTTTGGCCTGGACGA
CATCCGGCACATGATCCACACTATGTATGTCGACAGCCTTTCACGTCCTG
CAATCACCACGCCGGTCGCA
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