mRNA_H-paniculata_contig16501.3707.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16501.3707.1
Unique NamemRNA_H-paniculata_contig16501.3707.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16501.3707.1 vs. uniprot
Match: A0A6H5KTU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTU3_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 3.860e-54
Identity = 107/153 (69.93%), Postives = 115/153 (75.16%), Query Frame = 1 
Query:    1 LTTLNLSSNELDGAAIRSSAPHLGALSSLESLDLSCNRVDALLGLPFLPRLRRLLVPYNRLTSRRGTAPRSVSRIDQSQALASSLVYLDVRDNRIAGPAHAHTPHLAALARLSSLLLMSPGGG---QANPVCASTGYREVMFSATCSLETLDG 450
            LT LNLSSNELDG AIRS APHLG L+SLESLDLSCNR+D LLGLPFLP LRRLLVPYNRLTS           +D  QALASSL +LD RDNRIAGPA AH PHLAAL RL SL L S G G   Q NP+CA  GYRE +F+A  SL+TLDG
Sbjct:   11 LTALNLSSNELDGEAIRSCAPHLGPLASLESLDLSCNRIDGLLGLPFLPGLRRLLVPYNRLTS-----------LDGVQALASSLTHLDARDNRIAGPAGAHAPHLAALGRLESLALASVGRGRRVQPNPICACRGYREEVFAAARSLKTLDG 152
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BLAST of mRNA_H-paniculata_contig16501.3707.1 vs. uniprot
Match: D7FK56_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK56_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 3.060e-53
Identity = 107/153 (69.93%), Postives = 115/153 (75.16%), Query Frame = 1 
Query:    1 LTTLNLSSNELDGAAIRSSAPHLGALSSLESLDLSCNRVDALLGLPFLPRLRRLLVPYNRLTSRRGTAPRSVSRIDQSQALASSLVYLDVRDNRIAGPAHAHTPHLAALARLSSLLLMSPGGG---QANPVCASTGYREVMFSATCSLETLDG 450
            LT LNLSSNELDG AIRS APHLG L+SLESLDLSCNR+D LLGLPFLP LRRLLVPYNRLTS           +D  QALASSL +LD RDNRIAGPA AH PHLAAL RL SL L S G G   Q NP+CA  GYRE +F+A  SL+TLDG
Sbjct:   88 LTALNLSSNELDGEAIRSCAPHLGPLASLESLDLSCNRIDGLLGLPFLPGLRRLLVPYNRLTS-----------LDGVQALASSLTHLDARDNRIAGPAGAHAPHLAALGRLESLALASVGRGRRVQPNPICACRGYREDVFAAARSLKTLDG 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16501.3707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTU3_9PHAE3.860e-5469.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK56_ECTSI3.060e-5369.93Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16501contigH-paniculata_contig16501:3457..4450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.6
Seed ortholog evalue1.3e-46
Seed eggNOG ortholog2880.D7FK56
KEGG koko:K16475
Hectar predicted targeting categoryother localisation
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size450
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929315.212209-CDS-H-paniculata_contig16501:3456..37191622929315.212209-CDS-H-paniculata_contig16501:3456..3719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16501 3457..3719 -
1691480812.0091624-CDS-H-paniculata_contig16501:3456..37191691480812.0091624-CDS-H-paniculata_contig16501:3456..3719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16501 3457..3719 -
1622929315.2216132-CDS-H-paniculata_contig16501:4263..44501622929315.2216132-CDS-H-paniculata_contig16501:4263..4450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16501 4264..4450 -
1691480812.020007-CDS-H-paniculata_contig16501:4263..44501691480812.020007-CDS-H-paniculata_contig16501:4263..4450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16501 4264..4450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16501.3707.1prot_H-paniculata_contig16501.3707.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16501 3457..4450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16501.3707.1

>prot_H-paniculata_contig16501.3707.1 ID=prot_H-paniculata_contig16501.3707.1|Name=mRNA_H-paniculata_contig16501.3707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
LTTLNLSSNELDGAAIRSSAPHLGALSSLESLDLSCNRVDALLGLPFLPR
LRRLLVPYNRLTSRRGTAPRSVSRIDQSQALASSLVYLDVRDNRIAGPAH
AHTPHLAALARLSSLLLMSPGGGQANPVCASTGYREVMFSATCSLETLDG
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mRNA from alignment at H-paniculata_contig16501:3457..4450-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16501.3707.1 ID=mRNA_H-paniculata_contig16501.3707.1|Name=mRNA_H-paniculata_contig16501.3707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=994bp|location=Sequence derived from alignment at H-paniculata_contig16501:3457..4450- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCACTACCCTCAATCTGTCGTCCAACGAGCTCGATGGTGCGGCGATCCG
GTCATCGGCTCCGCACCTTGGAGCGCTCTCGTCCCTTGAGAGCCTGGACT
TGTCGTGCAATCGCGTGGACGCTCTCTTGGGGTTGCCGTTCCTGCCTCGC
CTTCGCCGGCTACTGGTGCCGTACAACCGACTCACCTGTTTGGATGGAGT
GCAGGTGTGTCTTGTCTGCTTTTGTAGTTGTACCTCTTTCATACCGAAAG
AAGCGTGAGTGCTGTGTGCTTTTGTGATGAGTGTCTGATTGAATGAGTAG
TTGTTGCATGGTGTATCGTTTGGGGGGGTATTTGAAAAAACAGAACGTGA
AAAGCCGGCAGAAGATGGTTGTTAAAGCGCTGTCTCGGATGTCGAATGTA
TTGTCATGGGATCACCTATCCCAAATATCTTGAAATTGTCACTCGTCTTC
TTGTACTTCTCTTACAGTGGTGGCACCAATTTGCGTCTCTTGACCGTCAC
CCGCACGTGCTCCTGTACAGTACCGACCCGCTAAAAATATATATGCACCC
TTCTAAGAAAGCAAGCCTAAGCTTTTAGAAATGTTTCAAGAAACAGCCTT
TGTAAGCCTGGGAGCGGACTGCAACTCGATAAAAGAGTGCAATAAGAGTT
CTTCTTTGACTTCCTTGCCTCGCCCAGACAAAAAACAAACACAGCCGACG
CCTGCCTTTTTCTTTTTCAGTTCCTTATGAGCGCGCCGGGGCACTGCACC
TCGTTCTGTGTCCCGCATCGATCAATCACAGGCTCTCGCTTCCTCGCTCG
TCTACTTGGACGTGAGAGACAACCGGATCGCCGGCCCGGCCCACGCCCAC
ACCCCGCATCTGGCTGCCCTCGCCCGCCTGAGCAGTCTTCTTCTCATGTC
CCCTGGTGGTGGCCAAGCCAACCCTGTCTGCGCCTCCACAGGGTACCGAG
AGGTGATGTTTTCGGCCACTTGTTCTCTCGAGACCCTCGACGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig16501:3457..4450-

>mRNA_H-paniculata_contig16501.3707.1 ID=mRNA_H-paniculata_contig16501.3707.1|Name=mRNA_H-paniculata_contig16501.3707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig16501:3457..4450- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCACTACCCTCAATCTGTCGTCCAACGAGCTCGATGGTGCGGCGATCCG
GTCATCGGCTCCGCACCTTGGAGCGCTCTCGTCCCTTGAGAGCCTGGACT
TGTCGTGCAATCGCGTGGACGCTCTCTTGGGGTTGCCGTTCCTGCCTCGC
CTTCGCCGGCTACTGGTGCCGTACAACCGACTCACCTCTCACTACCCTCA
ATCTGTCGTCCAACGAGCTCGATGGTGCGGCGATCCGGTCATCGGCTCCG
CACCTTGGAGCGCTCTCGTCCCTTGAGAGCCTGGACTTGTCGTGCAATCG
CGTGGACGCTCTCTTGGGGTTGCCGTTCCTGCCTCGCCTTCGCCGGCTAC
TGGTGCCGTACAACCGACTCACCTCGCGCCGGGGCACTGCACCTCGTTCT
GTGTCCCGCATCGATCAATCACAGGCTCTCGCTTCCTCGCTCGTCTACTT
GGACGTGAGAGACAACCGGATCGCCGGCCCGGCCCACGCCCACACCCCGC
ATCTGGCTGCCCTCGCCCGCCTGAGCAGTCTTCTTCTCATGTCCCCTGGT
GGTGGCCAAGCCAACCCTGTCTGCGCCTCCACAGGGTACCGAGAGGTGAT
GTTTTCGGCCACTTGTTCTCTCGAGACCCTCGACGGGCGCGCCGGGGCAC
TGCACCTCGTTCTGTGTCCCGCATCGATCAATCACAGGCTCTCGCTTCCT
CGCTCGTCTACTTGGACGTGAGAGACAACCGGATCGCCGGCCCGGCCCAC
GCCCACACCCCGCATCTGGCTGCCCTCGCCCGCCTGAGCAGTCTTCTTCT
CATGTCCCCTGGTGGTGGCCAAGCCAACCCTGTCTGCGCCTCCACAGGGT
ACCGAGAGGTGATGTTTTCGGCCACTTGTTCTCTCGAGACCCTCGACGGG
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