mRNA_H-paniculata_contig1650.3705.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1650.3705.1
Unique NamemRNA_H-paniculata_contig1650.3705.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1650.3705.1 vs. uniprot
Match: D8LK51_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK51_ECTSI)

HSP 1 Score: 375 bits (962), Expect = 9.010e-124
Identity = 181/209 (86.60%), Postives = 191/209 (91.39%), Query Frame = 2 
Query:   86 MEFSVPDKLQTLKDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGIFKFRVELPADYNDADTWPVVLFTSSVFNPMVNPMTGELDLKSMFPKWLPGKHYMVTALTFLKKVFYMKDFSFSHPANPEAQNLFQDDKRGFLERVETCVRESQERVYENEEESSLRFTEPKPAHDKLREKILGADVAARSSPIQADMREL 712
            ME SVPDKLQTLKDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANG+FKFRVELP DYNDA TWP++ FTSSVFNPMV+P+TGELDL+S+FP+WLPGKHYMVTALT+LKKVFYMKDFSF  PANPEAQ LFQDDKRGFLERVE CVRESQE VYENEE SSLRFTEPKPAHDKLREKILG D AA+SS      REL
Sbjct:    1 MELSVPDKLQTLKDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGVFKFRVELPPDYNDAGTWPIIRFTSSVFNPMVSPITGELDLRSVFPEWLPGKHYMVTALTYLKKVFYMKDFSFPRPANPEAQALFQDDKRGFLERVEACVRESQETVYENEEGSSLRFTEPKPAHDKLREKILGTDQAAKSSLPPTGTREL 209
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BLAST of mRNA_H-paniculata_contig1650.3705.1 vs. uniprot
Match: A0A7S2V268_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V268_9STRA)

HSP 1 Score: 267 bits (682), Expect = 2.520e-81
Identity = 129/212 (60.85%), Postives = 164/212 (77.36%), Query Frame = 2 
Query:   95 SVPDKLQTLKDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGIFKFRVELPADYNDADTWPVVLFTSSVFNPMVNPMTGELDLKSMFPKWLPGKHYMVTALTFLKKVFYMKDFSFSHPANPEAQNLFQDDKRGFLERVETCVRESQERVYENEEESSLRFTEPKPAHDKLREKILGAD--VAARS---SPIQADMRELE 715
            S  +++Q L+DY+LTIEYKHLKQ+APGGVFVIPS   LR+W+GVIFVRRGHY+ GIFKFRV+LP +YN  +TWP V FTS VFNP+V P TGELDLKS +P+W P +HYMVT LTFLKK+FYMK F   +PANP AQNLF  +K  FLE V  CVRES+E +++N+  SSL+F+EPKPAH+ LR+ I  ++  +  RS   S I+A+ ++ E
Sbjct:   32 SQQEQMQALRDYKLTIEYKHLKQHAPGGVFVIPSFESLRVWWGVIFVRRGHYSKGIFKFRVDLPDEYNGPNTWPKVTFTSRVFNPLVFPQTGELDLKSAYPEWNPERHYMVTVLTFLKKIFYMKSFDGPNPANPVAQNLFHSNKVEFLEEVNNCVRESKENIFKNDPGSSLKFSEPKPAHESLRKSIFESEEFLKGRSEVLSVIEANKKQAE 243
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BLAST of mRNA_H-paniculata_contig1650.3705.1 vs. uniprot
Match: A0A836CDQ7_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDQ7_9STRA)

HSP 1 Score: 233 bits (593), Expect = 9.030e-69
Identity = 108/196 (55.10%), Postives = 143/196 (72.96%), Query Frame = 2 
Query:   86 MEFSVPDKLQTLKDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGIFKFRVELPADYNDADTWPVVLFTSSVFNPMVNPMTGELDLKSMFPKWLP-GKHYMVTALTFLKKVFYMKDFSFSHPANPEAQNLFQDDKRGFLERVETCVRESQERVYENEEESSLRFTEPKPAHDKLREKILGADV 670
            ++    D+ + LKDY++ +EYKHL Q+APGGV+V P ++ LRIW+GVIFVRRG YANG+FKF VELP +Y DA  WP ++F S+VFNP+V P  GELDL+ M P W P G   M+  +T++KK+FY KDF+ + P NPEAQ +F+D+K GF ER   CV ES  R YE+   SSL+FTEP+PAHD +  +ILGA +
Sbjct:   15 VDLDFADRDRALKDYKIAVEYKHLWQHAPGGVYVTPDLDDLRIWHGVIFVRRGMYANGMFKFSVELPQNYGDAGAWPRLVFMSTVFNPLVKPSNGELDLRLMMPGWNPAGGDCMLKVITYMKKIFYTKDFALAAPPNPEAQRMFRDNKSGFAERAAACVEESLSRRYESPPGSSLKFTEPRPAHDSVAARILGAQI 210
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BLAST of mRNA_H-paniculata_contig1650.3705.1 vs. uniprot
Match: A0A7S2R8I5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R8I5_9STRA)

HSP 1 Score: 221 bits (563), Expect = 4.700e-64
Identity = 106/187 (56.68%), Postives = 134/187 (71.66%), Query Frame = 2 
Query:  107 KLQTLKDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGIFKFRVELPADYNDADTWPVVLFTSSVFNPMVNPMTGELDLKSMFPKWLPGKHYMVTALTFLKKVFYMKDFS---FSHPANPEAQNLFQDDKRGFLERVETCVRESQERVYENEEESSLRFTEPKPAHDKLREKIL 658
            + Q LKD +LTIEYKHLKQN+PGGV V+PS   LRIW GVIFVR+G Y +GIFKF + +PA+YND + WP V F S V NP VNP TG LDL+S FP+W P  H+MV+ LTFLKK+FY+KD     +  PANPEA  +F  D+  + +RVE  V  SQ  VYEN  ES L F++P+ AHD++R+ +L
Sbjct:   46 RTQALKDLKLTIEYKHLKQNSPGGVLVVPSFEDLRIWNGVIFVRKGLYQDGIFKFVITIPAEYNDRNVWPEVRFVSEVVNPYVNPQTGILDLRSNFPQWDPNSHFMVSVLTFLKKIFYLKDSDVADYRKPANPEALRMFMRDRAQYRQRVEELVATSQSTVYENPHESPLAFSQPQAAHDQVRQTLL 232
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BLAST of mRNA_H-paniculata_contig1650.3705.1 vs. uniprot
Match: A0A7R9W3Q1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W3Q1_9STRA)

HSP 1 Score: 219 bits (559), Expect = 9.900e-64
Identity = 100/190 (52.63%), Postives = 144/190 (75.79%), Query Frame = 2 
Query:   77 HGTMEFSVPDKLQTLKDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGIFKFRVELPADYNDADTWPVVLFTSSVFNPMVNPMTGELDLKSMFPKWLPGKHYMVTALTFLKKVFYMKDFSFSHPANPEAQNLFQDDKRGFLERVETCVRESQERVYENEEESSLRFTEPKPAHDKLR 646
            HG+   S  ++ Q+L+DY++TIEYKHLKQ+APGGV++IPS++ LR+++GVIFVRRG + NGIFKFRV+LP  YND + WP ++F+S V+NP VNP TGELD+++ +P W P +HY+VT LT+LKK+FYMK F     ANP+A++L + +   + ++VE CVRESQ  V+ NE + + +F+E +  H  LR
Sbjct:   41 HGSPLTSEAEREQSLRDYKVTIEYKHLKQHAPGGVYLIPSLDDLRVFHGVIFVRRGPFTNGIFKFRVKLPPRYNDVNAWPQIVFSSYVYNPHVNPETGELDVQAAYPTWDPHRHYLVTVLTYLKKIFYMKGFGEEARANPDARDLARSNPPAYRKKVEACVRESQRSVFVNEPDCTAKFSEDEVCHQVLR 230
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BLAST of mRNA_H-paniculata_contig1650.3705.1 vs. uniprot
Match: A0A7S1VY26_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VY26_9STRA)

HSP 1 Score: 213 bits (542), Expect = 4.520e-61
Identity = 99/185 (53.51%), Postives = 139/185 (75.14%), Query Frame = 2 
Query:   95 SVPDKLQTLKDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGIFKFRVELPADYNDADTWPVVLFTSSVFNPMVNPMTGELDLKSMFPKWLPGKHYMVTALTFLKKVFYMKDFSFSHPANPEAQNLFQDDKRGFLERVETCVRESQERVYENEEESSLRFTEPKPAHDKLRE 649
            S  ++ Q L+DY++TIEYKHL+Q+APGGV++IPS+  LR +YGVIFVRRG + NGIFKF+++LP  YND +TWP + FTS+VFNP V+P TGELD+KS +P+W P +HY+VT LTFLKK+FY+K F     AN EA+ L + +   +  +V+ CVR+SQ+ V+ NE+  + +FTE   +H  LR+
Sbjct:   39 SEEEREQALRDYKVTIEYKHLRQHAPGGVYLIPSLTDLRHFYGVIFVRRGPFTNGIFKFQLKLPPTYNDLNTWPTITFTSNVFNPHVHPKTGELDVKSAYPRWDPHRHYLVTILTFLKKIFYVKTFGPDAKANKEAKKLAEKEPAAYRLKVDECVRDSQKDVFVNEDGCTAKFTEETLSHRVLRD 223
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BLAST of mRNA_H-paniculata_contig1650.3705.1 vs. uniprot
Match: A0A024G8I5_9STRA (UBC core domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G8I5_9STRA)

HSP 1 Score: 211 bits (538), Expect = 1.730e-60
Identity = 97/186 (52.15%), Postives = 134/186 (72.04%), Query Frame = 2 
Query:  113 QTLKDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGIFKFRVELPADYNDADTWPVVLFTSSVFNPMVNPMTGELDLKSMFPKWLPGKHYMVTALTFLKKVFYMKDFS--FSHPANPEAQNLFQDDKRGFLERVETCVRESQERVYENEEESSLRFTEPKPAHDKLREKILGA 664
            QT+KDY L IEYKHL+Q+ P G++V+PS ++ RIWYG IF+ +G Y NGIFKF +E+P+DYN   T+P ++F+SS+F+P V+P T +LDLK+ FP+W P  HYMV ALTFLK +FYMK+F     + ANP A  LF D+   ++  VE CV  S E V+++E  SS+RFT P PAH+ LR++   +
Sbjct:   38 QTMKDYGLMIEYKHLRQHVPAGIYVLPSFDNSRIWYGTIFIHQGLYRNGIFKFTIEIPSDYNGPGTYPSIVFSSSIFHPYVSPQTRKLDLKAKFPEWDPELHYMVAALTFLKSIFYMKEFPEILDNVANPNALKLFHDELETYVTNVERCVSGSLESVFDDEPNSSIRFTRPIPAHENLRKEFFAS 223
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BLAST of mRNA_H-paniculata_contig1650.3705.1 vs. uniprot
Match: F0W1H7_9STRA (Uncharacterized protein AlNc14C7G945 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W1H7_9STRA)

HSP 1 Score: 211 bits (538), Expect = 1.900e-60
Identity = 96/186 (51.61%), Postives = 135/186 (72.58%), Query Frame = 2 
Query:  113 QTLKDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGIFKFRVELPADYNDADTWPVVLFTSSVFNPMVNPMTGELDLKSMFPKWLPGKHYMVTALTFLKKVFYMKDF--SFSHPANPEAQNLFQDDKRGFLERVETCVRESQERVYENEEESSLRFTEPKPAHDKLREKILGA 664
            QT+KDY L IEYKHL+Q+ P G++V+PS ++ RIW+G IF+ +G Y NGIFKF +E+P+DYN   T+P + F+++VF+P V+P T +LDLK+ FP+W P  HYMV ALTFLK +FYMK+F  + ++ ANP A  LF D+   ++  VE CV  S E VYE++  SS+RFT P PAH+ LR++   +
Sbjct:   38 QTMKDYGLMIEYKHLRQHVPAGIYVLPSFDNSRIWFGTIFIHQGLYRNGIFKFTIEIPSDYNGPGTYPSITFSTAVFHPYVSPQTRKLDLKAKFPEWDPELHYMVAALTFLKSIFYMKEFPETINNVANPNALKLFHDELETYVTNVERCVSGSLENVYEDDSSSSIRFTRPTPAHENLRKEFFAS 223
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BLAST of mRNA_H-paniculata_contig1650.3705.1 vs. uniprot
Match: A0A7S1ZU80_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZU80_TRICV)

HSP 1 Score: 209 bits (531), Expect = 1.980e-59
Identity = 100/186 (53.76%), Postives = 133/186 (71.51%), Query Frame = 2 
Query:   95 SVPDKLQTLKDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGIFKFRVELPADYNDADTWPVVLFTSSVFNPMVNPMTGELDLKSMFPKWLPGKHYMVTALTFLKKVFYMKDFSFSHP-ANPEAQNLFQDDKRGFLERVETCVRESQERVYENEEESSLRFTEPKPAHDKLRE 649
            S  ++ Q L+DY++TIEYKHLKQ+APGGV+++PS+  LR+++GV+FVRRG + NG+FKFRV LP  YND +  P + F S V+NP V+P TGELD+K  +P W P +HY+VT LT+LKK+FYMK F    P ANPEA+ L + D + +  RVE CVRESQ  V+ NEE  +  F E +  H  LRE
Sbjct:   28 SEAEREQALRDYKVTIEYKHLKQHAPGGVYLVPSLTDLRLFHGVVFVRRGPFTNGVFKFRVSLPPRYNDFNAHPSIHFGSYVYNPHVDPETGELDVKGAYPTWDPHRHYLVTVLTYLKKIFYMKTFGTDEPVANPEARELVRRDPKEYRRRVEACVRESQRSVFVNEEGCTAEFHEDRVCHQILRE 213
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BLAST of mRNA_H-paniculata_contig1650.3705.1 vs. uniprot
Match: A0A6U3YNG3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3YNG3_9STRA)

HSP 1 Score: 208 bits (529), Expect = 3.990e-59
Identity = 97/185 (52.43%), Postives = 136/185 (73.51%), Query Frame = 2 
Query:   95 SVPDKLQTLKDYRLTIEYKHLKQNAPGGVFVIPSVNHLRIWYGVIFVRRGHYANGIFKFRVELPADYNDADTWPVVLFTSSVFNPMVNPMTGELDLKSMFPKWLPGKHYMVTALTFLKKVFYMKDFSFSHPANPEAQNLFQDDKRGFLERVETCVRESQERVYENEEESSLRFTEPKPAHDKLRE 649
            S  ++ Q L+DY++TIEYKHLKQ+APGGV++IPS++ LR ++GVIFVRRG + NGIFKF+V LP  YND + WP + F+S V+NP VN  TGELD++  +P W P +HY+VT LT+LKK+FYMK+F     AN EA++L + D   + ++VE+CV+ESQ  V+ N+   + RFTE +  H  LR+
Sbjct:   41 SEAEREQALRDYKVTIEYKHLKQHAPGGVYLIPSLDSLRTFHGVIFVRRGPFTNGIFKFQVTLPERYNDVNAWPQITFSSYVYNPHVNVETGELDVRVAYPTWDPHRHYLVTVLTYLKKIFYMKNFGDDAVANVEARDLARSDPSAYRKKVESCVKESQRSVFVNDPGCTARFTEEQACHQVLRD 225
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1650.3705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK51_ECTSI9.010e-12486.60UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S2V268_9STRA2.520e-8160.85Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CDQ7_9STRA9.030e-6955.10Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A7S2R8I5_9STRA4.700e-6456.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9W3Q1_9STRA9.900e-6452.63Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1VY26_9STRA4.520e-6153.51Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A024G8I5_9STRA1.730e-6052.15UBC core domain-containing protein n=1 Tax=Albugo ... [more]
F0W1H7_9STRA1.900e-6051.61Uncharacterized protein AlNc14C7G945 n=1 Tax=Albug... [more]
A0A7S1ZU80_TRICV1.980e-5953.76Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A6U3YNG3_9STRA3.990e-5952.43Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1650contigH-paniculata_contig1650:18202..22491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score379.4
Seed ortholog evalue1.2e-102
Seed eggNOG ortholog2880.D8LK51
Preferred nameAKTIP
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000209,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006810,GO:0006950,GO:0006974,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009893,GO:0009987,GO:0010256,GO:0010498,GO:0010562,GO:0010604,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016482,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031325,GO:0031371,GO:0031399,GO:0031401,GO:0031625,GO:0031974,GO:0031981,GO:0032092,GO:0032268,GO:0032270,GO:0032446,GO:0032991,GO:0033503,GO:0033554,GO:0034641,GO:0036211,GO:0042325,GO:0042327,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045022,GO:0045937,GO:0046483,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051276,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070695,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080171,GO:0090304,GO:0098927,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.sperm individualization
EggNOG OGsKOG0429@1,KOG0429@2759
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-06_008200.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1922
Cds size702
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1650.3705.1prot_H-paniculata_contig1650.3705.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1650 18550..21332 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929315.0594046-UTR-H-paniculata_contig1650:18201..182341622929315.0594046-UTR-H-paniculata_contig1650:18201..18234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1650 18202..18234 +
1691480811.9134202-UTR-H-paniculata_contig1650:18201..182341691480811.9134202-UTR-H-paniculata_contig1650:18201..18234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1650 18202..18234 +
1622929315.071005-UTR-H-paniculata_contig1650:18521..185491622929315.071005-UTR-H-paniculata_contig1650:18521..18549Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1650 18522..18549 +
1691480811.9288566-UTR-H-paniculata_contig1650:18521..185491691480811.9288566-UTR-H-paniculata_contig1650:18521..18549Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1650 18522..18549 +
1622929315.1376917-UTR-H-paniculata_contig1650:21332..224911622929315.1376917-UTR-H-paniculata_contig1650:21332..22491Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1650 21333..22491 +
1691480811.9808762-UTR-H-paniculata_contig1650:21332..224911691480811.9808762-UTR-H-paniculata_contig1650:21332..22491Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1650 21333..22491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929315.0823896-CDS-H-paniculata_contig1650:18549..185881622929315.0823896-CDS-H-paniculata_contig1650:18549..18588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1650 18550..18588 +
1691480811.936636-CDS-H-paniculata_contig1650:18549..185881691480811.936636-CDS-H-paniculata_contig1650:18549..18588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1650 18550..18588 +
1622929315.0927243-CDS-H-paniculata_contig1650:18990..191631622929315.0927243-CDS-H-paniculata_contig1650:18990..19163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1650 18991..19163 +
1691480811.9448538-CDS-H-paniculata_contig1650:18990..191631691480811.9448538-CDS-H-paniculata_contig1650:18990..19163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1650 18991..19163 +
1622929315.1029334-CDS-H-paniculata_contig1650:19573..198171622929315.1029334-CDS-H-paniculata_contig1650:19573..19817Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1650 19574..19817 +
1691480811.9535885-CDS-H-paniculata_contig1650:19573..198171691480811.9535885-CDS-H-paniculata_contig1650:19573..19817Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1650 19574..19817 +
1622929315.1181943-CDS-H-paniculata_contig1650:20685..208021622929315.1181943-CDS-H-paniculata_contig1650:20685..20802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1650 20686..20802 +
1691480811.962749-CDS-H-paniculata_contig1650:20685..208021691480811.962749-CDS-H-paniculata_contig1650:20685..20802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1650 20686..20802 +
1622929315.128564-CDS-H-paniculata_contig1650:21203..213321622929315.128564-CDS-H-paniculata_contig1650:21203..21332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1650 21204..21332 +
1691480811.9719126-CDS-H-paniculata_contig1650:21203..213321691480811.9719126-CDS-H-paniculata_contig1650:21203..21332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1650 21204..21332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1650.3705.1

>prot_H-paniculata_contig1650.3705.1 ID=prot_H-paniculata_contig1650.3705.1|Name=mRNA_H-paniculata_contig1650.3705.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp
MASDDHGTMEFSVPDKLQTLKDYRLTIEYKHLKQNAPGGVFVIPSVNHLR
IWYGVIFVRRGHYANGIFKFRVELPADYNDADTWPVVLFTSSVFNPMVNP
MTGELDLKSMFPKWLPGKHYMVTALTFLKKVFYMKDFSFSHPANPEAQNL
FQDDKRGFLERVETCVRESQERVYENEEESSLRFTEPKPAHDKLREKILG
ADVAARSSPIQADMRELEKQEIGEAGVEAHPAR*
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mRNA from alignment at H-paniculata_contig1650:18202..22491+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1650.3705.1 ID=mRNA_H-paniculata_contig1650.3705.1|Name=mRNA_H-paniculata_contig1650.3705.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4290bp|location=Sequence derived from alignment at H-paniculata_contig1650:18202..22491+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACAGTGAAAGTCGTCTTCGTGCTCAAGGAGGGTGAGTTTCTCAAATGA
CTGCAGAAGAGAGGAAGATGTAAAGACAAAGGTTAGGGGCAACGCCCATT
TGTAGGAGGTCCATCCAAGAGGGAAGAGGGAAGGAAATCGCATGTTTTGG
TGGCGACCAAGCTAATCTAGCACGACTTACCTGCCCACCCTCGTCCCCCT
CGAGTAGCCATCAGCTCTCACCCTAAGCCTCTTGCCCTCGCAAACACGAG
GTATACACAACACCACCAGCATCTCGTGTGGAAAATGACCAAACAATTCG
TTTCATATTCGATAGCGCAGGGGATAATTGTTCAAGTACAGCGACGGAAT
GGCAAGCGACGATCACGGGACTATGGAGTTCTCAGTGGTGAGGAATGTTT
TACAGTATATGCGTTTTTCTGGATCACCGTCGCTCCGAGTAGAGTTCAAA
ACTCTTTCAAAATTCAGTCCCGCCTACTACTGCATGGACTACTGGATGGA
AGGAGTCTTACTTTTTTTCCAATACTGGCACATGAAATATACAGGATGTG
TTCATCGTACCCATATGTTTTGTGACGGCAGTCCCGCGCACGTTTTGAAG
GAGGGATGCGACTGCATCGTCCTCCGTTGATTGATAGAGCCTAGTATTGT
TTTGCGTAGCGTTCGGGAGAGAGTTGGTGCTTGCGTCGTCCTCCGTTGGT
CTCATCCGTGAAACTTGTGACTCGTGAACGTTATTTTTACCCATGAAATT
TTGCTCTTCTCCATCTCGTTTAAATCCCAAAAAATACAGCCAGACAAACT
ACAGACCCTGAAGGACTACCGTCTGACAATTGAATACAAGCACCTCAAGC
AGAACGCACCAGGCGGCGTGTTCGTGATTCCGAGCGTGAATCACCTTCGC
ATATGGTACGGCGTGATATTTGTTCGCCGCGGCCACTACGCTAACGGCAT
ATTCAAGTTCAGGTACGCTCGGGCTGGCAGTGGTGTCCATGTTTCATGTG
TACACCCGAAAGCTTATTGCACAGAGTGCCTTCGCGCGCCATACCGAGTA
CTTGCTAGTACCAAGTTTTCAATTTTCCAAGTACTTGCACCAGACAGACA
GATAGACAGGGATAGGTGCTGTTTTCGGCTTGTGCCCTCTACTTTCATCG
GTAGGATAACCTCGTTTCGGTCGTTTAAACGTTGCTACTGCTGTGTTGTT
CTCAAATTGTGTTTTCTGTACTACAGTAGTCCTCGGAGCATATTTTTATA
TTCAAGTATATCGTATCACTCATCATGATGGTCGAATAGCGTAATTCCTT
TCTGTATTATTCAGTGTTCCCTCAACTCCCAAGTGTATGTTTCTCTTGCG
TTGTCGGCTATTGGGTGTACAGGGTGGAGCTGCCAGCAGACTACAATGAC
GCCGATACCTGGCCCGTTGTCCTTTTCACCAGCTCCGTTTTCAATCCTAT
GGTGAATCCAATGACCGGAGAACTCGACCTGAAGTCCATGTTCCCTAAGT
GGCTCCCCGGAAAACACTACATGGTTACAGCCTTGACGTTCCTAAAGAAA
GTTTTCTACATGAAGGATTTTTCTTTCTCCCACCCCGCGAATCCAGAGGC
GCAAAATCTCTTCCAAGTGAGTCAAGTACTGTAGTTGCTTGCTCCGGAAT
GCATTTTCCTAACGTAAATGAACTCCCTTCCTCGCCCCCCCCCCGCTCTT
GACTGGCTTCGCGCTTCGAGGTGGTCCTGGTTCTGGTGTAAATTCATAAT
TGGATTTGACAAAAGAGAGCAGGTGCCGCTGATTTTGTGTGCAAGTAGTT
CACGGCGGCGGAAAATATAAATGCCTGGGGAAAATTGTGCACTTGTACTC
ATAACGAAGCGTTACATATGTTGAATCATACCGAGAGATCAGCGCTGTCC
AACGTATGGAAGTGTCTGAAGAAGCATTGTCACTGTTCTGAATGGTGCTT
TTTGGCTTTGAGGAAAATAATTCGTTTGATAGATTTGTGTGCAAACCAGC
ATACTATCGGACGTACCTTGACTTGCGAAGAGAAGCAGCAATTTTAATCG
TAATCGTAAGCGTAAGCATTTTTTCGGGCGAAATGCACCATCCATCCGTG
CATATACAAGAAATGGCAATCGTGTGTCATTCTCATATTATGTGCTGATC
ACAAGATCACTGTCGAAACTGATCATGTTGCTGACGGCGGACTCGCAGCA
AAACTCCCAGATTAACCTCATCGCCTTGTTGCTGGGGTACTGAAAATATC
TGTTACCACCACCGGGTTGGGTGTTGCAGCCGGTACCACGAAGAATATTA
TACATCCCTGTAGTGTCATACCATGCTGCCTTGAGCTGTATCTGGTGCTT
CGGATGTGTCCTGTTTACTCTCTGGGTGCACATCACTAGCAGGTTTGTCG
AGATTGCGACAGACCAATCACTTAGATTAACTGACTAACTGACGTGAGCG
TAGCCGTCCGTTTTCTCTATGCGAAATACGCCAGGATGACAAGCGAGGGT
TTCTGGAAAGGGTCGAGACATGCGTGCGTGAGAGCCAGGAACGCGTATAC
GAGAACGAAGAAGAATCCAGCCTACGTTTTACGGAACCAAAACCCGCGCA
TGTGGGTTATCGTTATAGTATAGTGTCAACGCCCTGTCGCGAATTGCCGG
GCTATACGGCACTTCGCTTGTCATCCTGGCGTATTTCGCTTGTCATACGG
CACGGAGCACTCCATCGTATGGTATCTTCATTTTGTACGCTAGCAGTGCA
GTCTTGAGCCTGCCACCTGGCTATGAATAGATGGGGAAAATGCCGCAACT
GGTCGCTGTTACTGTTTTTTTTTTTTTCCAAAACCGAGGTCATCGGCGCA
GACAGTTGGGCTGGGCTGATGGGGTATCGGCGTACAATATTTGCTGGTTC
GCACATGTCCTATATCAGGTAGTTCTGACCCAGCGTTTTGCTTTTCTTGT
GCTAATTCTCGATTCTAACCGTCGCTCGTCCCGTGCATCGGTACGTACGC
AGGACAAGCTCCGGGAAAAGATTTTGGGGGCAGATGTCGCCGCCAGATCA
TCGCCAATACAGGCAGACATGCGAGAGCTAGAAAAACAGGAAATCGGGGA
AGCTGGTGTGGAGGCTCACCCGGCTCGATGACCGTCGGCTAGCGAAGCAA
GAACTTGTGTTACCAGAGGGATCCATTGAGGCCGCTAAGCTCTGCTTGAA
TTGTCGCAAGAGTACAGTTGCAACCGTGCTATGCCTTTTTGGCTGCAAAA
AGTGTAATCAACACGGGGTATTTCATTCTGTCGGTGGCAATACCCAGTGT
TAGTTTCCACTCGACATGGTTTTTTTGCTTTTCCTCCACGACAAGCGATC
ACTATTAATAAGCTGAGTTTCACATGTCTTCCAAACGTTTACTCTTAATA
CGCATTTGGTTGAGATTGAGCAAGTTCTCAGATAGAGCATGGTTGAATAG
AAACCGCCTTATCTGCGCGAAAATTGATTCAACAGATTCGGTGTCACCCC
TTTCATGTCGACTTGGATGTGGAGGCTGCAAGGTGGCCTATATCCTGTCT
TCTTGTGTCAGTCGGTCAGTGTTTGACGACCTGTAGGGGCAAAGAGTAAA
TTTGAAATGCCTCAGTACTATATTATTTATTGTATGGTGGGCGCAGTCGT
TTCGCTCCCTCCTCGACGTTGGAGTTGTCAGCAATATATTCCGAAGGTTA
GGTTTTCTCCTTCCGTAGGCAACAGATCTTACCCTATTATTTTTTCTCGA
AGGCCACCTGAATCGAGGCTGATCCAATCCGTGAATTTGCTGAGTTAATG
CTCATGGAAGGCGCTTGTATGCAAACCCAGGGTTAATCGTTACCATATCT
ACAACAAAAAAAAAATCAATGTAGCAGTGGCACACACTGCAGGTGCCCTC
TTGGGGCCATGTTCCCCCAGGATATGGCGACACCAATTATGTTACCAGTG
CGATGAGCACCACAGGCTGGGAAGTAAATATCGTTTAGTTGACTTGGTTT
ATTTATTGTTACAGCTCACATATCGGCCCAGTTTGGGATTTTTGCGATGA
TGATATTGAGGGCGCGAGGGAGAGAGCATGAATGCGGAAAAGAAAACACA
CCATTGGGGTATGAAGAAAAGGAAGAGCATACGTGAAGTGGGGGTATATC
GTGGAGAAGCATTTGAGCTGAGATTCCCTCAGTGGGAGTATTTACAGTAG
GGAATACGGGTGATGTGCCACATATCAACGTATGAACAAGATGATTTATA
TCCGCCATGACGGAACGGAGCGCATCTATCTCTAACTCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1650:18202..22491+

>mRNA_H-paniculata_contig1650.3705.1 ID=mRNA_H-paniculata_contig1650.3705.1|Name=mRNA_H-paniculata_contig1650.3705.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at H-paniculata_contig1650:18202..22491+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAGCGACGATCACGGGACTATGGAGTTCTCAGTGATGGCAAGCGA
CGATCACGGGACTATGGAGTTCTCAGTGCCAGACAAACTACAGACCCTGA
AGGACTACCGTCTGACAATTGAATACAAGCACCTCAAGCAGAACGCACCA
GGCGGCGTGTTCGTGATTCCGAGCGTGAATCACCTTCGCATATGGTACGG
CGTGATATTTGTTCGCCGCGGCCACTACGCTAACGGCATATTCAAGTTCA
GCCAGACAAACTACAGACCCTGAAGGACTACCGTCTGACAATTGAATACA
AGCACCTCAAGCAGAACGCACCAGGCGGCGTGTTCGTGATTCCGAGCGTG
AATCACCTTCGCATATGGTACGGCGTGATATTTGTTCGCCGCGGCCACTA
CGCTAACGGCATATTCAAGTTCAGGGTGGAGCTGCCAGCAGACTACAATG
ACGCCGATACCTGGCCCGTTGTCCTTTTCACCAGCTCCGTTTTCAATCCT
ATGGTGAATCCAATGACCGGAGAACTCGACCTGAAGTCCATGTTCCCTAA
GTGGCTCCCCGGAAAACACTACATGGTTACAGCCTTGACGTTCCTAAAGA
AAGTTTTCTACATGAAGGATTTTTCTTTCTCCCACCCCGCGAATCCAGAG
GCGCAAAATCTCTTCCAAGGTGGAGCTGCCAGCAGACTACAATGACGCCG
ATACCTGGCCCGTTGTCCTTTTCACCAGCTCCGTTTTCAATCCTATGGTG
AATCCAATGACCGGAGAACTCGACCTGAAGTCCATGTTCCCTAAGTGGCT
CCCCGGAAAACACTACATGGTTACAGCCTTGACGTTCCTAAAGAAAGTTT
TCTACATGAAGGATTTTTCTTTCTCCCACCCCGCGAATCCAGAGGCGCAA
AATCTCTTCCAAGATGACAAGCGAGGGTTTCTGGAAAGGGTCGAGACATG
CGTGCGTGAGAGCCAGGAACGCGTATACGAGAACGAAGAAGAATCCAGCC
TACGTTTTACGGAACCAAAACCCGCGCATGATGACAAGCGAGGGTTTCTG
GAAAGGGTCGAGACATGCGTGCGTGAGAGCCAGGAACGCGTATACGAGAA
CGAAGAAGAATCCAGCCTACGTTTTACGGAACCAAAACCCGCGCATGACA
AGCTCCGGGAAAAGATTTTGGGGGCAGATGTCGCCGCCAGATCATCGCCA
ATACAGGCAGACATGCGAGAGCTAGAAAAACAGGAAATCGGGGAAGCTGG
TGTGGAGGCTCACCCGGCTCGATGAGACAAGCTCCGGGAAAAGATTTTGG
GGGCAGATGTCGCCGCCAGATCATCGCCAATACAGGCAGACATGCGAGAG
CTAGAAAAACAGGAAATCGGGGAAGCTGGTGTGGAGGCTCACCCGGCTCG
ATGA
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