mRNA_H-paniculata_contig1650.3704.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1650.3704.1 vs. uniprot
Match: D8LK50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK50_ECTSI) HSP 1 Score: 530 bits (1365), Expect = 1.500e-167 Identity = 426/906 (47.02%), Postives = 516/906 (56.95%), Query Frame = 1
Query: 31 MATRGGRG-WAGEKSKRFMMVGTKDSLPTGTKSGVVAPVPINTPSLRQEIHGSQGENTGISSISRSSAGGGWGT-IAGISPAGNASDETSGSGKGTGRVGGDRSQGGDDVFTRHFPDLRAGLEQAEKLDAVTKASSKVAPLRKPKPESAKDHGPSLRPRAMLKPTGSAGGGSAATAAAQAAIKDAVHNRVADKPKPEEPRRNSSSFADEISPKSRWPGRSQQEGGQQEXXXXXXXXXXGGRGAWDRSREGGXXXXXXXXXXXXXXXXHRDGFQDK-DRRNVGWSSDRNA-GSSRARESIFGLGAHTGVGSV--DTENAGGVPKPTTMYVRQHGPPPRKTSTHGTS-TPVKTQVPPQQHDRHVSTTHQSSSVRSSGESDTDPW-----TPTEASKWRSSSSPVDEPV--GAQEASPTLDSSSSQSGTHVHTHGPPRRGGREGPGDEKGDAS-SSSRSEGGHTAGRKPDAASEAPSRFASAGGVSEQGRGGTERDSVGSGERTLSGRWKEPATALAPPPAPTNTRWKEPKEEQFAPRPGMKRWRNGSREESNMGSGKWNREIGSVGDADGNAGPSDQSPTAPLYEQQAPLEEWQHGGTQTAHRAQEDQSTRPMEQQLHKRQPQVGASVQQPPQHLHLHDQPPHLKQEYRPPPPTAFSSFQQQDRRQHQMQEPVLRQFQPDHFRAQNYHTQEQGGPPSVPE-HVQHRQYQQEHLHXXXXXXXXXXXXQPPQQMHMPQHTLQQHSLXXXXXXXXXXXXXXQGQQQIPPAPLANHMNQVHHSRQHPVIPQQQXXXXXXXXXXXXXXXXXXXXGXXXXXXXXHHQEIGRQISQPQQLLVQQPQQHPPFLGYSDPRARGAGGLGGLPVHNMAPPGSYRDMPL---------QQPGIPPPGPYGFQSPESHHKR 2673
MA RGGRG WAG+K+KR+MMVGTKD++P G K+GVVAPVPINTPSLRQEI QG+N G ++I+RS +GGGWG+ +A + A +A+ + R G Q GDDVFTRHFPDLRAGLEQAEKLDAVTKASSKVAPLRKPK E AKD GPSLRPRAMLKPTGSAGGGSAATAAAQAAI DAVHNRVA PKPEE RR +SFADEIS KSRW R QEGG + G G W+ ++E G RD F +K DRR+ +S+R+A S+R RESIFG GAH GV S D+ + G P+T YVRQHGPPPRK +T T+ P Q P + ++ S+S S+ +S DPW TP SKWRS+S +P EA DS SSQSG++V HGPPRR GREG DE+G+ S SSSR + H AG +P SRF + G EQG+ ++DS ERT SGRWKEPA +LAPPP PTNTRWKEPKEE PR G +RW+ +RE+ MG G+W R D D + PLEEWQ GG Q + R+Q++Q+ +E QL ++QP V S Q Q LHLH+ +L + Y+ P FSSFQ Q +HQMQ+P L QFQ +HF+AQ Y Q+ +PE H+ QYQ +H+ Q PQ MH PQH+ XXXXXXXXXXX QQQ+ + Q+ SRQ Q H + Q+ P + Q +G +DPR GLGGLPV P YRD Q G+ PG YG QSPE+HHKR
Sbjct: 1 MAARGGRGGWAGDKTKRYMMVGTKDAVPAGAKTGVVAPVPINTPSLRQEI---QGDNAGTAAINRSGSGGGWGSAVASSASANSAAGQXXXXXXXXXRRDGSGRQRGDDVFTRHFPDLRAGLEQAEKLDAVTKASSKVAPLRKPKSEPAKDQGPSLRPRAMLKPTGSAGGGSAATAAAQAAIADAVHNRVATAPKPEERRRPMASFADEISTKSRWAERPLQEGGSR-----GRGAGRGTGGTWEMNKERGRDSGQGGRGFERAERGRRDAFPEKEDRRSFRQNSNRSAMNSTRGRESIFGSGAHVGVASSTQDSTSKGSSKTPSTTYVRQHGPPPRKVATPATTPAPAAQQEQPLVSQQPTRSSAYSASKPSNDQSHGDPWGKSVETP---SKWRSASPSNPQPAMDAPPEAPQMPDSPSSQSGSYVRAHGPPRRSGREGQADERGETSISSSRPD--HDAGGEP------TSRFGGSWGAPEQGQNAMDKDSSAGIERTQSGRWKEPAGSLAPPPHPTNTRWKEPKEE---PRAGARRWK--AREDGQMGGGRWGRSAEEDADIDDSXXXXXXXXXXXXX---VPLEEWQQGGAQASRRSQQNQTAHAVEPQLQQQQP-VHQSHQPASQPLHLHEHA-NLDRGYQRNPSEGFSSFQPQ---KHQMQDPGLHQFQAEHFQAQAYQNQQSASRGPLPEQHLPRHQYQSDHV---PVQRQHFNQVQIPQHMHPPQHSAXXXXXXXXXXXXXXXXHQGHPQQQV-----YHQGQQLDMSRQTSQAQQM------------------------------HMHQHHLQMQHPSSAFMMPSQ----GMG-TDPRGARGVGLGGLPVQMATP---YRDEQXXXXXXXXSQHQAGMSAPGAYGVQSPETHHKR 828
BLAST of mRNA_H-paniculata_contig1650.3704.1 vs. uniprot
Match: A0A6H5KJY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJY1_9PHAE) HSP 1 Score: 447 bits (1150), Expect = 1.980e-133 Identity = 315/578 (54.50%), Postives = 375/578 (64.88%), Query Frame = 1
Query: 31 MATRGGRG-WAGEKSKRFMMVGTKDSLPTGTKSGVVAPVPINTPSLRQEIHGSQGENTGISSISRSSAGGGWGT-IAGISPAGNASDETSGSGKGTGRVGGDRSQGGDDVFTRHFPDLRAGLEQAEKLDAVTKASSKVAPLRKPKPESAKDHGPSLRPRAMLKPTGSAGGGSAATAAAQAAIKDAVHNRVADKPKPEEPRRNSSSFADEISPKSRWPGRSQQEGGQQEXXXXXXXXXXGGRGAWDRSREGGXXXXXXXXXXXXXXXXHRDGFQDK-DRRNVGWSSDRNA-GSSRARESIFGLGAHTGVGSV--DTENAGGVPKPTTMYVRQHGPPPRKTSTHGTS-TPVKTQVPPQQHDRHVSTTHQSSSVRSSGESDTDPW--TPTEASKWRSSSSPVDEPV--GAQEASPTLDSSSSQSGTHVHTHGPPRRGGREGPGDEKGDAS-SSSRSEGGHTAGRKPDAASEAPSRFASAGGVSEQGRGGTERDSVGSGERTLSGRWKEPATALAPPPAPTNTRWKEPKEEQFAPRPGMKRWRNGSREESNMGSGKWNREIGSVGDADGN--AGPSDQSPTA 1722
MA RGGRG WAG+K+KR+MMVGTKD+LP G K+GVVAPVPINTPSLRQEI QGEN G ++I+RS +GGGWG+ + + A +A+ ++ SG G GR G Q GDDVFTRHFPDLRAGLEQAEKLDAVTKASSKVAPLRKPK E AKD GPSLRPRAMLKPTGSAGGGS ATAAAQAAI DAVHNRVA PKPEE RR +SFADEIS KSRW R QEGG + G G W+ ++E G RD F +K DRR+ +S+R+A S+R RESIFG GAH GV S D+ + G P+T YVRQHGPPPRK +T T+ P Q P + ++ S+S S+ +S DPW + SKWRS+S +P EA P DS SSQSG++V GP GREG DE+ + S SSSRS+ H AG +P SRF + G EQG+ ++DS ERT SGRWKEPA +LAPPP PTNTRWKEPKEE PR G +RW+ +RE+ MG G+W R G D D + A P+ SPT+
Sbjct: 1 MAARGGRGGWAGDKTKRYMMVGTKDALPAGAKTGVVAPVPINTPSLRQEI---QGENAGTAAINRSGSGGGWGSAVVSSASANSAAGQSVASGNGKGRRDGSGRQRGDDVFTRHFPDLRAGLEQAEKLDAVTKASSKVAPLRKPKSEPAKDQGPSLRPRAMLKPTGSAGGGSVATAAAQAAIADAVHNRVATAPKPEERRRPMASFADEISTKSRWAERPFQEGGSR-----VRGAGRGTGGTWEMNKERGRDSGQGGRGFERAERGRRDAFPEKEDRRSFRQNSNRSAMNSTRGRESIFGSGAHVGVASSTQDSTSKGSSATPSTTYVRQHGPPPRKAATPATTPAPAVQQEQPLVSQQPTRSSAYSASKPSNDQSHGDPWGKSAETLSKWRSASPSNPQPAMDAPPEAPPMPDSPSSQSGSYVRGDGP----GREGQADERVETSVSSSRSD--HDAGGEP------TSRFGGSWGAPEQGQNAMDKDSSAGIERTQSGRWKEPAGSLAPPPHPTNTRWKEPKEE---PRAGARRWK--AREDGQMGGGRWGRSAGEDADIDDSSAAPPTMASPTS 553 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1650.3704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1650.3704.1 >prot_H-paniculata_contig1650.3704.1 ID=prot_H-paniculata_contig1650.3704.1|Name=mRNA_H-paniculata_contig1650.3704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=882bp MATRGGRGWAGEKSKRFMMVGTKDSLPTGTKSGVVAPVPINTPSLRQEIHback to top mRNA from alignment at H-paniculata_contig1650:10328..18442- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1650.3704.1 ID=mRNA_H-paniculata_contig1650.3704.1|Name=mRNA_H-paniculata_contig1650.3704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8115bp|location=Sequence derived from alignment at H-paniculata_contig1650:10328..18442- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1650:10328..18442- >mRNA_H-paniculata_contig1650.3704.1 ID=mRNA_H-paniculata_contig1650.3704.1|Name=mRNA_H-paniculata_contig1650.3704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5292bp|location=Sequence derived from alignment at H-paniculata_contig1650:10328..18442- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |