mRNA_H-paniculata_contig1649.3697.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1649.3697.1
Unique NamemRNA_H-paniculata_contig1649.3697.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1649.3697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1649contigH-paniculata_contig1649:12768..14784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929314.3065622-CDS-H-paniculata_contig1649:12769..129131622929314.3065622-CDS-H-paniculata_contig1649:12769..12913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1649 12770..12913 -
1691480811.5293038-CDS-H-paniculata_contig1649:12769..129131691480811.5293038-CDS-H-paniculata_contig1649:12769..12913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1649 12770..12913 -
1622929314.3226624-CDS-H-paniculata_contig1649:14652..147841622929314.3226624-CDS-H-paniculata_contig1649:14652..14784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1649 14653..14784 -
1691480811.5392954-CDS-H-paniculata_contig1649:14652..147841691480811.5392954-CDS-H-paniculata_contig1649:14652..14784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1649 14653..14784 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1649.3697.1prot_H-paniculata_contig1649.3697.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1649 12770..14784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1649.3697.1

>prot_H-paniculata_contig1649.3697.1 ID=prot_H-paniculata_contig1649.3697.1|Name=mRNA_H-paniculata_contig1649.3697.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
ETSYARTGQGQTIPNENSCGNGRAMDGSNVVMPGHASEALERSSRQVHTD
RWGFLGRQNGEDTEPPLGSKHGRGGKGEMAETSQRGLYPGVS
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mRNA from alignment at H-paniculata_contig1649:12768..14784-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1649.3697.1 ID=mRNA_H-paniculata_contig1649.3697.1|Name=mRNA_H-paniculata_contig1649.3697.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2017bp|location=Sequence derived from alignment at H-paniculata_contig1649:12768..14784- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGACGAGCTATGCACGCACGGGACAAGGACAGACTATCCCGAATGAAAA
TAGCTGTGGCAATGGGCGGGCTATGGATGGCAGCAATGTTGTCATGCCTG
GTCATGCTAGTGAAGCTCTAGAGAGATCATCGGTGAGCACCGTACTCGAA
ACAAAATCGTGTTTGTAGACGGAGTGCGCGCTGGTTGCGAAGCGTTACTA
CGGCATTTCACCCAAGTCATGTCCAGAGAGATATATCGTTGGATCATTTG
CGCGAAATTGTTCCCGATTGAAAAACCCACAGCATGCAGGCTGGTCTATG
TCTGCCAAGCGTAGATACCCTGAAGGGCTAAAAGTATGAGCCATTTTAAC
TGAAAGGGCGTTATAATGCCAAATTCGATAACAAGAATTTTCTTTTTAGA
GGGAAAAGTAAGAAGATTTGGCGGATTCCTCAGGGCTGAGTGACCCCACC
AGCGCAAAAAACTGACAAAAATACGCGCATCAATTCACCTCTCAGTGGAA
GAAATGGCTACCTCGCGACGAAAACAAGTGTATAGTTCGGTCGGCTCAGG
GTTGAGGACGACTCGTTCCCTTGAAAATGACTTAAACTGGCTCTAATTGA
CTCTAACCAGCACTATCTGAATCGGCTTTGCCGATATTTCAACGGTTTCG
CCCTCAGGGCTGAGGACATGCCGCAAGGCTGAGAGCTCAAAGATATGTCA
GAATGAGTGAGAATCATGGATGGGCCCAGTGTATCCCAAATATCTTTGTC
GTCGTACTACGCCCCCTTCAGTTAACGCGACTCTACTTGTACGGCTAACC
GGTTAGCGTGACCCTGTGACCAGGCGTTTCTCGTGCTAGGTTTTGTTTTT
CAATGCCGTTTTTAGTAACCCAGGCAGTCGGTTTGATCAAAACAGTCATG
AGGTTTTGGACCAGAACGACCACGGAATCTTTCTTGTGTCGTGATCATTT
CACGTCTTCAATGGTTCGAAACGACGTCTTTCTCACATCGATTCTCCGCA
GAACCCCACTTTCGCCGGAAACAAAACGCATGGCCGATTGGCTTCTTTAC
CAGCGCAAAACACATGTGTTAAACCAATTTTTCATTCCTGACAGAACATC
TTCCTCGCCACTTAATCGAGTGTGTTTCTGCGCCGGTTGCGGTGTCTAGT
CAAGCTTCATCAACCCCATAGTCATATGTGTATTCCACACAGATAGAATC
TCTCAATTGTAGAACAAAATGATGTCTGGAGCTACCGGCGATGTTCGAGC
TCGAACTTCGAATAAGCGGATAGACAAGATGATGACAAACATTTGACGGT
TTCATACGGAGTAGGGGAGGGCGAAAACGACATTCGATTACATGTTCCAG
CCCCGAGATGATGTTTATCTTGTTTTCATGGGAGGAGAATATCTCAGGGC
CAACCATGACATGGAGTGATGTTTCCTGGTTTTGGACGAACCGAGTTGAA
TTTTACGTTTCGGTGACATCCGATATGCTGTGCAGGTGCCTTGACCTGAT
GATACGCTTGTTGCCATAATCATGCTTCAAAAATTGTTTTTCGAGTTTTT
TGCTCGAGAAGGTTGACTTTGTAGCTGTGCTTCCGTCCTTCGGGTGAAAC
ATCTCCATAACGCAAGCCTATGCATACCTAAGCACAATATCAGGCAAGCA
CACGCTGGGCTCGGTTGACGAACCCACTACGGCAGCAAGACAGCAAATAA
CCCAAAATCAAGATATGGAACCACATTCAGAAATACTGACAATAACTGGT
GAAGTTATTTCTCGTTGACTGCTCGGGTCTGTGGGCGTCTGCGTGCGCTC
TAGTCACTACGAAGGTGGCCTTTCATATGACTTCTGCTTCGTTTGCCCGC
CGTGTCAAAACTGCAACACAGCGGCAAGTACACACCGATAGGTGGGGTTT
TCTCGGCAGACAGAACGGTGAAGATACCGAACCCCCTCTCGGAAGCAAAC
ACGGCAGAGGAGGAAAAGGAGAAATGGCTGAGACGAGCCAGCGAGGATTG
TATCCCGGAGTTAGCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1649:12768..14784-

>mRNA_H-paniculata_contig1649.3697.1 ID=mRNA_H-paniculata_contig1649.3697.1|Name=mRNA_H-paniculata_contig1649.3697.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig1649:12768..14784- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGACGAGCTATGCACGCACGGGACAAGGACAGACTATCCCGAATGAAAA
TAGCTGTGGCAATGGGCGGGCTATGGATGGCAGCAATGTTGTCATGCCTG
GTCATGCTAGTGAAGCTCTAGAGAGATCATCGGAGACGAGCTATGCACGC
ACGGGACAAGGACAGACTATCCCGAATGAAAATAGCTGTGGCAATGGGCG
GGCTATGGATGGCAGCAATGTTGTCATGCCTGGTCATGCTAGTGAAGCTC
TAGAGAGATCATCGCGGCAAGTACACACCGATAGGTGGGGTTTTCTCGGC
AGACAGAACGGTGAAGATACCGAACCCCCTCTCGGAAGCAAACACGGCAG
AGGAGGAAAAGGAGAAATGGCTGAGACGAGCCAGCGAGGATTGTATCCCG
GAGTTAGCCGGCAAGTACACACCGATAGGTGGGGTTTTCTCGGCAGACAG
AACGGTGAAGATACCGAACCCCCTCTCGGAAGCAAACACGGCAGAGGAGG
AAAAGGAGAAATGGCTGAGACGAGCCAGCGAGGATTGTATCCCGGAGTTA
GC
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