mRNA_H-paniculata_contig16483.3693.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16483.3693.1
Unique NamemRNA_H-paniculata_contig16483.3693.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16483.3693.1 vs. uniprot
Match: D7G3M8_ECTSI (Similar to metal response element-binding transcription factor-1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M8_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 3.950e-68
Identity = 123/161 (76.40%), Postives = 134/161 (83.23%), Query Frame = 1 
Query:    1 SRFNSRLCRCTQPGCGRAFDRPSKLAAHEKTHLPRFFCEFEGCGRGFVLASGLNLHLREEHPFRCSLCERSFDREDKMQEHQSTHARAGDGGLIRPYLCGAPGCGKAFTEKRNLNAHRRTAHTEGGRKRFRXXXXXXXXXXXXXXXXXXXXXREHSPSKKG 483
            S+FNSR  RC+  GCGR+FDRPSKLAAHEKTH  RF C+F+GCG  FVLASGLNLHL+E+HPFRC +C++ FDREDKMQ HQ+THARAGDG  IRPY C   GCGKAFTEKRNLNAHRRTAHTEGGRKRFRXXXXXXXXXXXXXXXX     REH  S  G
Sbjct:  366 SKFNSRQHRCSHAGCGRSFDRPSKLAAHEKTHKARFVCQFDGCGAAFVLASGLNLHLKEKHPFRCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCNVRGCGKAFTEKRNLNAHRRTAHTEGGRKRFRXXXXXXXXXXXXXXXXVKHVKREHQSSSGG 526
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BLAST of mRNA_H-paniculata_contig16483.3693.1 vs. uniprot
Match: A0A0D0VUF7_CRYGA (Transcription factor iiia n=6 Tax=Cryptococcus gattii species complex TaxID=1884637 RepID=A0A0D0VUF7_CRYGA)

HSP 1 Score: 68.2 bits (165), Expect = 2.350e-10
Identity = 38/117 (32.48%), Postives = 51/117 (43.59%), Query Frame = 1 
Query:   25 RCTQPGCGRAFDRPSKLAAHEKTHLPRFFCEFEGCGRGFVLASGLNLHLREEHPFRCSLCERSFDREDKMQEHQSTHARAGDGGLIRPYLCGAPGCGKAFTEKRNLNAHRRTAHTEG 375
            +C   GC RA+ +PS+LA HE TH                         R E PF CSLC R++ RED ++ H  TH+       I+P+ C   GC K+F     L  H      +G
Sbjct:   44 KCAYEGCDRAYTKPSRLAEHEMTH-------------------------RNERPFVCSLCPRTYYREDHLKAHARTHSNV----KIKPFPCTREGCKKSFWTASKLRRHEEVHDKDG 131
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BLAST of mRNA_H-paniculata_contig16483.3693.1 vs. uniprot
Match: A0A084G5H2_PSEDA (Uncharacterized protein n=1 Tax=Pseudallescheria apiosperma TaxID=563466 RepID=A0A084G5H2_PSEDA)

HSP 1 Score: 61.6 bits (148), Expect = 4.410e-8
Identity = 36/119 (30.25%), Postives = 56/119 (47.06%), Query Frame = 1 
Query:   28 CTQPGCGRAFDRPSKLAAHEKTHLPR--FFCEFEGCGRGFVLASGLNLHLREEH----PFRCSLCERSFDREDKMQEHQSTHARAGDGGLIRPYLCGAPGCGKAFTEKRNLNAHRRTAH 366
            C  PGC +AF+RPS+L AH+++H     F           +    L  H++  H    PF CS C +SF    ++Q H++ HAR  +      +    P C + F ++  L  H R+ H
Sbjct:   46 CEFPGCTKAFNRPSRLTAHQRSHTGERPFIXXXXXXXXXXMEEKHLQQHIKGTHEDYRPFVCSHCGKSFGTSTRLQRHEAIHARRDNQLRCSEF----PPCDRLFKQQSALERHIRSDH 160
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BLAST of mRNA_H-paniculata_contig16483.3693.1 vs. uniprot
Match: A0A2N3NCU0_9PEZI (Uncharacterized protein n=1 Tax=Lomentospora prolificans TaxID=41688 RepID=A0A2N3NCU0_9PEZI)

HSP 1 Score: 56.6 bits (135), Expect = 2.380e-6
Identity = 32/119 (26.89%), Postives = 55/119 (46.22%), Query Frame = 1 
Query:   28 CTQPGCGRAFDRPSKLAAHEKTHLPRFFCEFEGCGRGFVLASGLNL--HLREEH----PFRCSLCERSFDREDKMQEHQSTHARAGDGGLIRPYLCGAPGCGKAFTEKRNLNAHRRTAH 366
            C  PGC +AF+RPS+L AH+++H                     +L  H++  H    P+ CS C ++F    ++Q H++ H R  +      +    P C ++F ++  L  H R+ H
Sbjct:   46 CDYPGCTKAFNRPSRLTAHQRSHTGXXXXXXXXXXXXXXXXXXKHLQQHVKGTHEDYRPYTCSHCGKTFGTSTRLQRHEAIHTRRDNQLRCTEF----PPCERSFKQQSALERHIRSEH 160
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BLAST of mRNA_H-paniculata_contig16483.3693.1 vs. uniprot
Match: A0A8J1THZ9_OWEFU (Ofus.G033556 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1THZ9_OWEFU)

HSP 1 Score: 52.4 bits (124), Expect = 7.900e-5
Identity = 36/125 (28.80%), Postives = 58/125 (46.40%), Query Frame = 1 
Query:   25 RCTQPGCGRAFDRPSKLAAHEKT---HLPRFF-CEFEGCGRGFVLASGLNLHLREEHPF-----RCSLCERSFDREDKMQEHQSTHARAGDGGLIRPYLCGAPGCGKAFTEKRNLNAHRRTAHTE 372
            RC +  CG        LA H +    ++ + F C F+ C + F     L+ H++ +H       RCS+C+R+F  + K+++HQ  H     G  +  Y+CG     K F  K NL  H +  H +
Sbjct: 1463 RCLE--CGILCSTLKGLATHNRKKHDNVEKMFKCTFK-CPKSFATKELLDRHIKRQHEIKADDKRCSVCDRAFSSQSKLEDHQRGHT----GVKLLCYICG-----KKFKFKNNLGTHMKEQHNK 1575
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16483.3693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G3M8_ECTSI3.950e-6876.40Similar to metal response element-binding transcri... [more]
A0A0D0VUF7_CRYGA2.350e-1032.48Transcription factor iiia n=6 Tax=Cryptococcus gat... [more]
A0A084G5H2_PSEDA4.410e-830.25Uncharacterized protein n=1 Tax=Pseudallescheria a... [more]
A0A2N3NCU0_9PEZI2.380e-626.89Uncharacterized protein n=1 Tax=Lomentospora proli... [more]
A0A8J1THZ9_OWEFU7.900e-528.80Ofus.G033556 protein n=1 Tax=Owenia fusiformis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16483contigH-paniculata_contig16483:3275..5491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score73.6
Seed ortholog evalue9.9e-11
Seed eggNOG ortholog5286.M7X248
KEGG koko:K09191
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Zinc finger, C2H2 type
EggNOG OGs2YFSC@29000,39VD5@33154,3Q322@4751,3UZ2E@5204,KOG1721@1,KOG1721@2759
Ec32 ortholog descriptionZinc finger C2H2-type/integrase DNA-binding domain
Ec32 orthologEc-24_001700.1
COG Functional cat.S
Best tax levelPucciniomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000,ko03021
Exons3
Model size489
Cds size489
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16483.3693.1prot_H-paniculata_contig16483.3693.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16483 3275..5491 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929314.012826-CDS-H-paniculata_contig16483:3274..33911622929314.012826-CDS-H-paniculata_contig16483:3274..3391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16483 3275..3391 -
1691480811.4126856-CDS-H-paniculata_contig16483:3274..33911691480811.4126856-CDS-H-paniculata_contig16483:3274..3391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16483 3275..3391 -
1622929314.0264106-CDS-H-paniculata_contig16483:4410..45911622929314.0264106-CDS-H-paniculata_contig16483:4410..4591Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16483 4411..4591 -
1691480811.4219058-CDS-H-paniculata_contig16483:4410..45911691480811.4219058-CDS-H-paniculata_contig16483:4410..4591Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16483 4411..4591 -
1622929314.041036-CDS-H-paniculata_contig16483:5300..54911622929314.041036-CDS-H-paniculata_contig16483:5300..5491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16483 5301..5491 -
1691480811.4292014-CDS-H-paniculata_contig16483:5300..54911691480811.4292014-CDS-H-paniculata_contig16483:5300..5491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16483 5301..5491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16483.3693.1

>prot_H-paniculata_contig16483.3693.1 ID=prot_H-paniculata_contig16483.3693.1|Name=mRNA_H-paniculata_contig16483.3693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=163bp
SRFNSRLCRCTQPGCGRAFDRPSKLAAHEKTHLPRFFCEFEGCGRGFVLA
SGLNLHLREEHPFRCSLCERSFDREDKMQEHQSTHARAGDGGLIRPYLCG
APGCGKAFTEKRNLNAHRRTAHTEGGRKRFRCEEPGCEMAFAHRHTLVKH
VKREHSPSKKGKA
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mRNA from alignment at H-paniculata_contig16483:3275..5491-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16483.3693.1 ID=mRNA_H-paniculata_contig16483.3693.1|Name=mRNA_H-paniculata_contig16483.3693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2217bp|location=Sequence derived from alignment at H-paniculata_contig16483:3275..5491- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCAGGTTTAACTCAAGACTCTGCCGGTGTACGCAGCCGGGTTGTGGCCG
TGCATTCGACCGCCCGAGCAAGCTAGCGGCGCACGAGAAGACGCACCTGC
CGAGGTTCTTCTGTGAGTTCGAGGGGTGTGGCAGGGGCTTCGTGCTGGCG
TCGGGGCTTAATCTGCACCTCCGAGAGGAACACCCGTTTAGGTAGGTGGT
CTTCCCGTCGCCTTTTTTTTTTGTCGTCGTCGCGGAGTGGTTCTTTTATC
GCAATCTTCGGTCCAAAGCTCGGAGTGTAGTGTCTTCATTCTTGCCTTGT
GTTATTGGGCGATGGGAGGGTACAGTGCGACTCGCTTGTCAATGTTAACG
TTGACAGCGGCACACTATTGTTTTGGCAGTATTTTGTTTTTTCACCGGCC
TTTTTTGCCGCTTTTATCGTTTTCCCCCGCAAAGGATTGGGAAAAAATTG
TGGGTAAACGAGTAGAGATCACATGCTATATAAATGTATGAGTGACGAAC
ATAATGATGGGATCAGCAAGCAAAGACCTATATTTGGGCAATTGTAGTGG
CGATATTTCGGAAACGACCACGTCCATAATGCATGAACCGGACAGAGGTA
GTCGGGGGGTCGTTGGCTCCTAGAAGGGTTGCCGTTGCGGTTCTTCATAG
CTGAGACACTTAGAGTACCAGTTTTCTTCTTTTAGTGTATTTTTCAAAAT
TTCAAGAGATACAGCGATTCTACACCTCGTTTTTCTTTTTTTCGATTTTT
CTGACAGATTGTGTTTTATCGACAACGGTAATAAGAAAGAACAAAGACAG
ATATAGGGAAAAAATAGTAATGTCAACAACGTCCTTAACTCAAGCGATGT
CATGGTTGTGCTGATTTTGCGGGATTTGCGGGGGTTTTTTTGCATATCAG
GTGTAGTCTGTGTGAGCGGTCCTTCGACAGAGAGGACAAAATGCAAGAGC
ACCAATCGACTCATGCACGGGCTGGGGACGGAGGGTTGATCCGGCCGTAC
CTGTGCGGCGCACCCGGGTGCGGAAAGGCGTTCACAGAGAAGAGAAATCT
CAATGCCCATCGCAGGACGGCGCACACAGAGGTGTGTTTAAAAACCATGC
ATACGCAGCAGGCTGGACTTGGTATATTTTTCGTCTCCGAAGCATGTAGG
CTGAGGCGGGGGGGAGGGGGAGGGGCAACCATCCATCTCCGCGACATGGC
GTATACCTTTGCTCGAAGAATTGTATGTGCAACTACATATAAACTGAAGT
ACCAGCAAACGTGTGTGATCCTCGAGCTCATATATGAATTATCACTGTCT
AAAATCCATGATGACGTATACAACGGCTTGCTGCGTTTTCACCGACTCTT
GACTAGTCGCTTGTAGGCGCAATGTTACTCTTCAGGTGTGTTCTCGTTTT
TTTTTTTTTAATATTGAAAACTGCATATAAAACAGGTATCACGGGAAGGT
GATAATTTAAAAGCACCAAGATAAAGCTACACTCCTTGGAAACAATATCT
CGGCGTTTTTGTTTTTTTAGTCCAAGTGACCGTGTTTTCCCGAAATAACG
AACAGCGAATACCGTTTTGTGGCCTTAGATATTGGTCTCAAGGAGTGTAG
CTTTTTCGTGGTACGTTTAGAATACTGCTTCGCTCAATGGTGCCTGTTTT
ATACGTGGTTTTCAAAAATACCGAATTGATTGTCACCTTCGTCACCTAAG
TGTATTAAATACGAGGAATATTGAAGCACAGATGTACCCATTGGAGTAGG
GGTTCACTCTGCTCTTCATGTATTTTATCCTACCGTGTAGGGTTAGGGTC
GGCAGGGCGGTAAAAACGTGTGACGCGGTAGGGCTTTACTGATATGAAAA
TCGTGGGCAATATTCGATTGCCAACCAAAAGATGAGGTTCAGTCCCAGTC
ATCTACCTGCTGTGCATCTTTTCATGACATCGTATTGTTTGCCCCCCCCC
CCCCCAGCGGTGCCTTTGGGTTGCAGTACCCAAGAGTAGAAGACTTATCT
TGTAATTGATGTACTTTTAGTTGGGTCGCTTTCAGCTGGGAATATTTGCA
GGACACTGATGAACAAATCGAACCCGCTGACCAATTTTGCAAACGTGCAG
GGCGGTCGAAAAAGATTCCGTTGTGAGGAGCCTGGGTGCGAGATGGCGTT
CGCCCATCGGCACACCTTGGTCAAGCACGTAAAGCGCGAGCATTCTCCGT
CGAAAAAGGGAAAGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig16483:3275..5491-

>mRNA_H-paniculata_contig16483.3693.1 ID=mRNA_H-paniculata_contig16483.3693.1|Name=mRNA_H-paniculata_contig16483.3693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at H-paniculata_contig16483:3275..5491- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCAGGTTTAACTCAAGACTCTGCCGGTGTACGCAGCCGGGTTGTGGCCG
TGCATTCGACCGCCCGAGCAAGCTAGCGGCGCACGAGAAGACGCACCTGC
CGAGGTTCTTCTGTGAGTTCGAGGGGTGTGGCAGGGGCTTCGTGCTGGCG
TCGGGGCTTAATCTGCACCTCCGAGAGGAACACCCGTTTAGTCCAGGTTT
AACTCAAGACTCTGCCGGTGTACGCAGCCGGGTTGTGGCCGTGCATTCGA
CCGCCCGAGCAAGCTAGCGGCGCACGAGAAGACGCACCTGCCGAGGTTCT
TCTGTGAGTTCGAGGGGTGTGGCAGGGGCTTCGTGCTGGCGTCGGGGCTT
AATCTGCACCTCCGAGAGGAACACCCGTTTAGGTGTAGTCTGTGTGAGCG
GTCCTTCGACAGAGAGGACAAAATGCAAGAGCACCAATCGACTCATGCAC
GGGCTGGGGACGGAGGGTTGATCCGGCCGTACCTGTGCGGCGCACCCGGG
TGCGGAAAGGCGTTCACAGAGAAGAGAAATCTCAATGCCCATCGCAGGAC
GGCGCACACAGAGGTGTAGTCTGTGTGAGCGGTCCTTCGACAGAGAGGAC
AAAATGCAAGAGCACCAATCGACTCATGCACGGGCTGGGGACGGAGGGTT
GATCCGGCCGTACCTGTGCGGCGCACCCGGGTGCGGAAAGGCGTTCACAG
AGAAGAGAAATCTCAATGCCCATCGCAGGACGGCGCACACAGAGGGCGGT
CGAAAAAGATTCCGTTGTGAGGAGCCTGGGTGCGAGATGGCGTTCGCCCA
TCGGCACACCTTGGTCAAGCACGTAAAGCGCGAGCATTCTCCGTCGAAAA
AGGGAAAGGCGGGCGGTCGAAAAAGATTCCGTTGTGAGGAGCCTGGGTGC
GAGATGGCGTTCGCCCATCGGCACACCTTGGTCAAGCACGTAAAGCGCGA
GCATTCTCCGTCGAAAAAGGGAAAGGCG
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