mRNA_H-paniculata_contig1647.3686.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1647.3686.1
Unique NamemRNA_H-paniculata_contig1647.3686.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1647.3686.1 vs. uniprot
Match: A0A6H5JC87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC87_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 2.170e-45
Identity = 106/212 (50.00%), Postives = 133/212 (62.74%), Query Frame = 1
Query:  187 DGGACSSDPFRLPGPEEELTHPFGNGLVVRYGCSSRLVACALSVVAVA-NFPPQVQEPCRMLYFVVTDLMRTNIAVLRSVLKEGVSALYRPSKALVIDNLEVLEVYRKQGLATSLVNFVKGIAEAHGIGLYSSCLPLDAGFWDRRGFQEETMQDI--HVLLNAREPFSPSTRVMLMRAGADYAEYLPGNADRPSSIRPFQHSQYTFGLESGA 813
            DGGA S+D FR+P   EELT PF    VVRYG + RLV    ++  VA   PP+++EP R++YFVVTD MRT IA LR+VLKEG+ A  R   A +ID L  LEV+RKQGLATSL NFVKGIAEAHG+ L+ S       FW+ RGF+EET  ++     L+  +  +      L+RAGA Y EY P N +R S  RPF H    +   +GA
Sbjct:    2 DGGASSTDAFRMPAEGEELTTPFSE-FVVRYGHTPRLVRNTAAIAGVAAELPPRMEEPYRLVYFVVTDQMRTTIATLRAVLKEGLQAPLRTPTAFIIDELHTLEVFRKQGLATSLTNFVKGIAEAHGVELFVSSELYIRSFWELRGFEEETSPEVLRACNLDLDDGSNTGASTTLLRAGAAYTEYQPANDERLSITRPFYHGGDGYLTAAGA 212          
BLAST of mRNA_H-paniculata_contig1647.3686.1 vs. uniprot
Match: D7G1U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U4_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 6.800e-30
Identity = 74/139 (53.24%), Postives = 91/139 (65.47%), Query Frame = 1
Query:  349 QEPCRMLYFVVTDLMRTNIAVLRSVLKEGVSALYRPSKALVIDNLEVLEVYRKQGLATSLVNFVKGIAEAHGIGLYSSCLPLDAGFWDRRGFQEETMQDI--HVLLNAREPFSPSTRVMLMRAGADYAEYLPGNADRPS 759
            +EP R++YFVVTD MRT IA LR+VLKEG+ A  R   A +ID L  LEV+RKQGLATSL NFVKGIAEAHG+ L+ S       FW+ RGF+EET  ++     L+  + F       L+RAGA Y EY P N +R S
Sbjct:    2 EEPYRLVYFVVTDQMRTTIAALRAVLKEGLQAPLRTPTAFIIDELHTLEVFRKQGLATSLTNFVKGIAEAHGVELFVSSELYIRSFWELRGFEEETSPEVLRACSLDLDDGFKTGAATTLLRAGAAYTEYQPANDERLS 140          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1647.3686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JC87_9PHAE2.170e-4550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1U4_ECTSI6.800e-3053.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1647contigH-paniculata_contig1647:3331..9928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size2144
Cds size1962
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929313.1199257-UTR-H-paniculata_contig1647:3330..35101622929313.1199257-UTR-H-paniculata_contig1647:3330..3510Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1647 3331..3510 +
1691480811.0174348-UTR-H-paniculata_contig1647:3330..35101691480811.0174348-UTR-H-paniculata_contig1647:3330..3510Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1647 3331..3510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929313.1335752-CDS-H-paniculata_contig1647:3510..36811622929313.1335752-CDS-H-paniculata_contig1647:3510..3681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1647 3511..3681 +
1691480811.0274148-CDS-H-paniculata_contig1647:3510..36811691480811.0274148-CDS-H-paniculata_contig1647:3510..3681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1647 3511..3681 +
1622929313.147198-CDS-H-paniculata_contig1647:4330..44131622929313.147198-CDS-H-paniculata_contig1647:4330..4413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1647 4331..4413 +
1691480811.0365095-CDS-H-paniculata_contig1647:4330..44131691480811.0365095-CDS-H-paniculata_contig1647:4330..4413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1647 4331..4413 +
1622929313.1573584-CDS-H-paniculata_contig1647:5813..58741622929313.1573584-CDS-H-paniculata_contig1647:5813..5874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1647 5814..5874 +
1691480811.0462005-CDS-H-paniculata_contig1647:5813..58741691480811.0462005-CDS-H-paniculata_contig1647:5813..5874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1647 5814..5874 +
1622929313.1718614-CDS-H-paniculata_contig1647:6226..63221622929313.1718614-CDS-H-paniculata_contig1647:6226..6322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1647 6227..6322 +
1691480811.064492-CDS-H-paniculata_contig1647:6226..63221691480811.064492-CDS-H-paniculata_contig1647:6226..6322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1647 6227..6322 +
1622929313.1941643-CDS-H-paniculata_contig1647:7843..80131622929313.1941643-CDS-H-paniculata_contig1647:7843..8013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1647 7844..8013 +
1691480811.0799093-CDS-H-paniculata_contig1647:7843..80131691480811.0799093-CDS-H-paniculata_contig1647:7843..8013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1647 7844..8013 +
1622929313.2106154-CDS-H-paniculata_contig1647:8547..99281622929313.2106154-CDS-H-paniculata_contig1647:8547..9928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1647 8548..9928 +
1691480811.09026-CDS-H-paniculata_contig1647:8547..99281691480811.09026-CDS-H-paniculata_contig1647:8547..9928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1647 8548..9928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1647.3686.1prot_H-paniculata_contig1647.3686.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1647 3511..9928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1647.3686.1

>prot_H-paniculata_contig1647.3686.1 ID=prot_H-paniculata_contig1647.3686.1|Name=mRNA_H-paniculata_contig1647.3686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=654bp
MADGGACSSDPFRLPGPEEELTHPFGNGLVVRYGCSSRLVACALSVVAVA
NFPPQVQEPCRMLYFVVTDLMRTNIAVLRSVLKEGVSALYRPSKALVIDN
LEVLEVYRKQGLATSLVNFVKGIAEAHGIGLYSSCLPLDAGFWDRRGFQE
ETMQDIHVLLNAREPFSPSTRVMLMRAGADYAEYLPGNADRPSSIRPFQH
SQYTFGLESGAEGCATTAMDDGGGGGDYALPRLRNQTIAPIGTAGEKAFL
SSPTSRNGKSSSSVFGASVALQGFGSADSALPPPPPLPPVGGGGGNSHPV
LTNARLARHDEEEAAKRVGEIYNSGGVSGVAGVEAAGSGLAHERSALARR
TAAGGWPGIPAQQHRSGTHRLMSSSVAEDSTREKALRGLVAIGELPAAPR
LAFVDLTGGGRQRQLSEETDEEALQKAIQLSLQGIGVSGSGGDRGDSPGD
ETETDEEPGYGAHPSVGEGSLGMVRESSAHNQAPPLPTPNPQGFPPPLPP
SINNCGGRDGGSGGNGDDSNLVQQLPGLASGAPTAPVDNQDAAAVRLSAA
SGKDCHRDRQGSSGSYSGSGSSGDSGDGGDGRERGAAGRGHESDNNCFRR
LRRRRDESGASTPGEQSPNGADGALEHQEGHEGYAGVGGDCVEGGAGGAA
GRGG
back to top

mRNA from alignment at H-paniculata_contig1647:3331..9928+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1647.3686.1 ID=mRNA_H-paniculata_contig1647.3686.1|Name=mRNA_H-paniculata_contig1647.3686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6598bp|location=Sequence derived from alignment at H-paniculata_contig1647:3331..9928+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTTGAGCCATGACGAGAACGCCTCTTGTCTGTCTCACTGTTTTCAACA AACGAACTGCCTTTACACACACAACGCTGCCCTTCTCCTACAGTTGTGCT AGTGATGTTGTGATAGTTTGCGTCAAGGAGAGAGCCACTGCGCTGCTCCG CGTACCCGTATTGTGCTCCAGCGTGAACTTATGGCGGATGGTGGAGCGTG TTCCTCCGACCCGTTCAGGTTGCCTGGGCCGGAGGAGGAGCTGACCCACC CCTTTGGCAATGGATTAGTCGTTCGATACGGCTGTTCATCGCGGCTGGTA GCTTGTGCTCTGTCCGTCGTGGCGGTTGCCAACTTCCCCCCTCAAGTCCA GGTACGCACCGACAGCATTGCTCTGGTATGGGCCATTTTGAAGTGTTATG TTGAGGGGCTGCACACCGTTTTGGGGGCCAAGGATAAGTTTCCTCACGCG CTTTTTATTTTTGTCTCTGCCCAACAGATGGTAAGCTTACCACAACAACG CGGCGCGTTTTTTGCTGTGAGGGCAGGATTACGCCGCGTATTTTGACGAG GAAAGCAAACTGTGTTCACTGCTTGATAGGAGCTCACTCACTGCGGCCGG GGACCAGTAGTCAAGCATCGGGTTCCCCGAAAAGAAGATCATCATGTTCT ATCACTTTCCAACTGACCTGGTCACGCCGGTCCTCTCTATGTCGTTGTTG CGCAAGCGCAGTTTAAAAATTGAGCAACTTTGTGCCCGCCATTTGTGGAC TCTCTCAGGATAGACATCGAGTAGAGACAGTACAACTGTACAATACAGTA GTCCCAGCGTGCAGCTGACTTGTTTGTGTGTATGACTGCACTGAGTGTAC TGTAGTTAAGGAGTGTCTCCATTTACACTCGTAGATTACAGTTGGTGATA CAGACAATTGCGACCTTGAGCATTACAGACATAGTGGACAGGGTCATGCA CTAGGTTTGTGGTCTAAGCTGAGAACCTGGTTACTTCCTGTCACCTGCAG GAGCCCTGCCGTATGCTGTACTTCGTCGTGACGGATCTCATGCGGACAAA TATAGCGGTGCTGCGATCAGTGCTGAAAGAAGGGTGAGCTCTAAAACTCA TATAAATAGTATGTTCCTCGCCTAAAAATGTTTTAAAAAATTGCTTGGTC GGCAGCTACACTCATACAGTATATACCACATTTAGTCGCCTAATTATTAT GTATCCGCTTGAGCTTTCAACATGTTGCAATCGGGTTCGCAGAACACGGC GGACGAGTGTTCTTCCTTAGATCTATAGTCCAGTACAATAAAGCTAACGG GGTGCTGTTGTGTATGTACAGAGTACCGCAGGTTCCGTCTTAGAACTGGA TATCGTCTGCGGACAGTGCATTTCATCTCATGTCAGGTCATCCATACTGC ACATGTAGTCACTGCACTGCGCTGTTGCTCATAGTACCGGGCAGTGCACA TACATAAAAAGTATGTAAAAGCACACTGCAGTAATATGGAGGAAATAGAG TAGAACCCTGGAAGCTGGTACACAAACATAAGAGTACATTCGAGTCCGTG CCACCATACCATCTCCGCAGCTTTATTTTAATTGTACTGTTACAGCCTTT TAATCAATATGAGTGCGTCCATGTGTGCCCGCATAAAAAACAACGGTTTT CGATCAGGTCCACGCTCACTCTCCGTGGCAACCGTGTCAACCGTAGTGAA AAAACAACGCTAACAACGTACCCACGCAGGGTTGGAAATTGAAAATATTT TGCGTCCGTTCATGTAATTGGTGTGTATGCAACACATGTATCGGATTTTT TTTCAATGACAATCATGTGGTGTCGAAGGCGGCGACACTCGCTTACGAAA CTGTGCGAGTGGTGACAGCTACCACCCATACCTGCCGCAGGCTGTTTCTA TCGCTGAAGAAACATCGCCCACAAAAATAGTCAACAGCGTCTCTCCATTC GCTAATCTAGCTCAAGTTTACCTCCATTTAGATACGTGCGAAGAGGGTCC CGAGATTGGCAGCATGCCGTGTGTTAGCGTCACATCGCCACCGGTTTGGC AGCGTTGCGTTGAGTGTAGCGCTCGATATGTTGGAAACAGTCGTCGACAG CGTGATGTAGAAACCGTCAGGATCTTTGTTCTTGATTCTTCTCATCAAAT CTTGTACATATTTGATTTTGTCATGATCCAGAAGGAAAGGTGAAACCGTC GTGCGAGGTTTCACCCCCACAAAAAAGAGCGATCGAAGCCGTTTTTTGTA CTTCCACCAATATTTCCATGATGATGGTCGTGTCTCTCCCAACGGTATTT ACTGCATACCCACCCATATATTTTGTCGCCAGTACATTTGCTCGGCGACT CGTGGCAATTTTTCGTAATTCTCATTCGACGAGGTACGTGTGAACTAGGA TGCTCACATACGTCCTGCGTCGTTGTCTCCTGTGCCCACCTTCTTGCGTT GCGTTTTTTTTTCTCCGTCCACGGTGTTCTCAGAGTGTCTGCTCTGTATC GGCCGTCGAAGGCACTGGTCATTGATAACCTGGAGGTGCTTGAGGTGAGC CTAGAGTCTGCATCGTTCTTCATCTGACATGCTGTACAGGGTGCATGCAA GTACATTAATAGAAGCGTATGGTGGGAAAATACGGTATGGAGTACCTGTA CATCTTTACACTAGCTGTGGTTAAACGGACACAGGAAGAGGTGCACACTG TGTTGTTTCTCTTATATTTTGGGGGGTGATATGGCAACTCAGATCAACTT GTTCATCCCAATTTGTTGATCTTCCTGTGGGTATTTTCTGAGGTGTAGCG AAAACGCACCATCTTGATCTTGTTACTCCAAATTGATCCCGTCTGCAATC GATTCATGCTCTTCTCTTTTCCTTTCTTCTTTTTCGCTCCTCCAAGGTAT ATCGGAAACAAGGACTGGCGACAAGCCTGGTGAACTTCGTGAAAGGGATT GCAGAGGCTCACGGCATCGGTCTCTATAGTAGCTGCTTGCCGGTGAGTTT GGCCGCAGAGAGGTTAGGATTGGCATGTGCTTTACCAACACTAGAATATC ATAGCTAGTATTTAGAGCGGACCCAATCGGTAAACATACCATACTTTCAT TCAAATGAATTTGTTTTTTTCTCGGTGCTGCAACTGCGGCTGATGTCGAA GGTACCCTAGTTAGGTTTGCGGTGGACATCACCGCGCGCGGTATAGTTTC TGTTCATCTCTTCACCACGGTTTTCTCAAGACGTAGAAGATACACGCCAA ATATTATTTTACTTTCCGTCACGGATCAGTCCTCCTCCAATCGATACCTC CGGTCTGGAGCTAGGAGTGTATTAATACCCTGTACTTGCCTTGTATTATC GCGCGGTGGGGGCAACAGTCCCACTCGTACGTCAACATTGTAGTTGACGG TGGTGCTCTTCGTTCTCCGTAAATGCATTTTTTTGCTGCTTACTAGCATT TTTCCAGAAAACAGTTCACCCCCCAGACACAAACGAATGGAACATTCGCA TCTATCTCGAACTATCATTATTTGTCTTTTTCGTTAACAAATCTATGAAT GGTCATTCTCAAGATGGTTACTAGGTGGTCGTATACCCGGCAAACAGTCA CACATGCAGATCCAGTTTATTTTCCGGATGGTACTGTACAGATTGAATAC TCTATTTGCCCTCAAGCTATTCGATGCTCGATGGTATATCGAGTACAATG CATATTGTTCGCGTCAGGTGGACATCTTACCCAACTCAAACAGATAGAGT ATTCGTTCCAGATTTCTCGTATTTATTCGTGTCTTGAATTCGCATTTGTC CGGGGGGTGAAATGTTTGAGGAGAAATTGTGTCTACGAGGAATTGTGGTG TCGAGAGAAATCAGAGCTATCTGATGACTGATCCAGATTGAATCCATTTT AGGTTGCCACTGCTTTGTAGTCGTAGTTTTTGAGATTTTGAGTTTGCCAC GAAGTATCTCATCGCCAGGAGTGATGTACATACACTTTAAACCATAGATC GCTCACGGTTGGTTTTTGGGCGTTCGGCAGGGCCAGTCTCCCATAGAGGT CGCGTTAAGTGCGATCTATTTGAATACTTTTTCTTTTTCCTTTGGCGCTT AGCTTTTATGTTTTTTGTTAATTATAAACTGCGATTATTTTATCATCACT AGCTAATCCAGTCTGTGGGCGTTTGGTTCAGTCAAACTAAAAGGCTAATG TATGCGGTTTGACTCCATCTGCGGGGTTTTTTGCACTCATCAATTTCGTC GAGATACCTGAATATACGAATGTCCTTTTTTGTTCTCTCTCTACTTTGTT CCTGCTGCACCCTCAGCAGCAGCAGCACATGCTCAATTTCCTTTCAATTT CTGTATGATATGCTATGGAACCAACCACCTGTCGGGCTTGCTCGCTTACC GTTTTTTTCTTGTCTTGGGCGCTGATTTGGTTTTCCCCGTCGCATGTGTG CTGCTATTGCTGCTGCTGGCATTTTTCCTTTTTGATTAATTGTTTTGTCC GGTGGTTTGTCAGCTTGACGCGGGGTTTTGGGACCGGCGAGGCTTCCAGG AAGAGACGATGCAGGACATACACGTCTTGTTGAATGCTCGCGAACCCTTC TCGCCGTCCACAAGAGTCATGCTCATGCGAGCGGGAGCAGACTACGCCGA GTACTTGCCGGGAAACGCAGATCGCCCGAGCAGGTGGGGGATGCAGGAAA AGTCGATGGCGAAGGGAAGATCCACAATCGAATACCCTCCTGACTGGTGA TGTTGTTCACCAACACCAAGTCTTCTGTTTGTGTTGTTTGTATGTACCAT GTCTTTCGTTTAGAGAGCGGGTTTCTTGGTTTTGTCCAAACATGATTCAT TTCGTGGCTTCGTTTTGCCGTTCTGCTGCAAGTATAGACCACCCCCTCCG CCCTATACTTTTATGGAATAGGTCAGTAGAAAAGAAAAATGCGTGGTGGG TCGAAATTCAGCACTACAAACTTCAGCTTGCAACTATTCACCAGGCATGT CTTAGTTTATGAGTTGTTGATTTGACCAGGTATGTGGTCCATGCAAACTA GGCCATCTGCCTTTTTTCGCACAGCATCCCTCTAATTGATATCGGACTCT ATTACATGGGGATATCATATGATGAACCGTCCGCTGTATGGAGAAATCAC AGTATCCTCTCGCAACATTGAGCCGACACGATATCTCGATCCGTTGCCCC TCGTTAAAATTCTACAGCATCCGGCCTTTCCAGCATAGCCAATACACTTT TGGTTTGGAGTCTGGCGCGGAAGGCTGCGCTACTACCGCGATGGACGATG GCGGCGGCGGCGGCGATTACGCACTCCCTCGGCTGCGTAATCAGACGATC GCACCGATAGGAACGGCCGGCGAAAAGGCGTTTTTGTCGTCACCAACCAG CCGTAACGGGAAGAGCTCCTCGTCCGTTTTCGGAGCGAGCGTGGCTCTAC AAGGGTTCGGATCCGCCGACTCTGCGCTACCCCCGCCACCTCCCCTCCCT CCCGTCGGTGGCGGTGGCGGCAATAGCCATCCCGTATTGACCAACGCGCG CCTCGCGCGACATGATGAAGAGGAAGCAGCCAAGCGCGTAGGCGAGATTT ACAACAGCGGAGGGGTATCAGGCGTGGCGGGGGTAGAGGCAGCCGGATCT GGGCTAGCCCACGAGAGGTCCGCCTTAGCGCGACGCACCGCGGCGGGCGG CTGGCCTGGAATACCGGCCCAGCAACACAGGAGTGGTACACACAGGTTGA TGTCGTCATCGGTGGCGGAAGACTCCACGCGAGAGAAGGCGCTTCGAGGA CTAGTGGCTATTGGTGAGTTGCCGGCGGCGCCACGGTTGGCGTTCGTTGA TCTCACTGGCGGTGGCAGGCAGCGTCAGCTTTCGGAGGAGACTGACGAGG AGGCCTTGCAGAAGGCTATTCAGCTGTCGTTGCAGGGCATAGGGGTAAGT GGCAGCGGCGGCGACCGCGGGGATTCTCCGGGAGACGAAACCGAGACGGA CGAGGAACCCGGCTATGGCGCTCATCCTTCGGTTGGAGAGGGCTCGCTGG GAATGGTCCGCGAATCGTCGGCACATAACCAAGCACCTCCGCTGCCGACG CCTAATCCGCAGGGGTTTCCTCCCCCGCTGCCGCCCTCCATCAACAACTG CGGCGGCCGAGATGGTGGTAGTGGAGGCAATGGCGACGATAGCAATTTGG TGCAGCAGCTTCCAGGCCTAGCATCGGGAGCGCCAACGGCACCCGTCGAT AATCAAGACGCCGCCGCCGTTAGGCTTTCAGCCGCCAGCGGGAAAGACTG CCACCGTGACAGGCAGGGAAGCAGCGGGAGCTACAGCGGGAGCGGTAGTA GCGGCGATAGCGGGGACGGGGGCGATGGACGTGAAAGGGGGGCCGCGGGT CGAGGGCACGAGAGCGACAATAATTGCTTCCGGCGTTTGAGACGGAGGAG GGACGAGAGCGGCGCGAGCACTCCCGGGGAGCAGTCCCCAAACGGGGCAG ACGGCGCGCTCGAGCACCAAGAGGGTCACGAGGGGTATGCAGGAGTGGGC GGTGATTGTGTAGAGGGAGGCGCCGGGGGGGCAGCAGGCCGCGGTGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1647:3331..9928+

>mRNA_H-paniculata_contig1647.3686.1 ID=mRNA_H-paniculata_contig1647.3686.1|Name=mRNA_H-paniculata_contig1647.3686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3924bp|location=Sequence derived from alignment at H-paniculata_contig1647:3331..9928+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGATGGTGGAGCGTGTTCCTCCGACCCGTTCAGGTTGCCTGGGCC
GGAGGAGGAGCTGACCCACCCCTTTGGCAATGGATTAGTCGTTCGATACG
GCTGTTCATCGCGGCTGGTAGCTTGTGCTCTGTCCGTCGTGGCGGTTGCC
AACTTCCCCCCTCAAGTCCAGATGGCGGATGGTGGAGCGTGTTCCTCCGA
CCCGTTCAGGTTGCCTGGGCCGGAGGAGGAGCTGACCCACCCCTTTGGCA
ATGGATTAGTCGTTCGATACGGCTGTTCATCGCGGCTGGTAGCTTGTGCT
CTGTCCGTCGTGGCGGTTGCCAACTTCCCCCCTCAAGTCCAGGAGCCCTG
CCGTATGCTGTACTTCGTCGTGACGGATCTCATGCGGACAAATATAGCGG
TGCTGCGATCAGTGCTGAAAGAAGGGAGCCCTGCCGTATGCTGTACTTCG
TCGTGACGGATCTCATGCGGACAAATATAGCGGTGCTGCGATCAGTGCTG
AAAGAAGGAGTGTCTGCTCTGTATCGGCCGTCGAAGGCACTGGTCATTGA
TAACCTGGAGGTGCTTGAGAGTGTCTGCTCTGTATCGGCCGTCGAAGGCA
CTGGTCATTGATAACCTGGAGGTGCTTGAGGTATATCGGAAACAAGGACT
GGCGACAAGCCTGGTGAACTTCGTGAAAGGGATTGCAGAGGCTCACGGCA
TCGGTCTCTATAGTAGCTGCTTGCCGGTATATCGGAAACAAGGACTGGCG
ACAAGCCTGGTGAACTTCGTGAAAGGGATTGCAGAGGCTCACGGCATCGG
TCTCTATAGTAGCTGCTTGCCGCTTGACGCGGGGTTTTGGGACCGGCGAG
GCTTCCAGGAAGAGACGATGCAGGACATACACGTCTTGTTGAATGCTCGC
GAACCCTTCTCGCCGTCCACAAGAGTCATGCTCATGCGAGCGGGAGCAGA
CTACGCCGAGTACTTGCCGGGAAACGCAGATCGCCCGAGCAGCTTGACGC
GGGGTTTTGGGACCGGCGAGGCTTCCAGGAAGAGACGATGCAGGACATAC
ACGTCTTGTTGAATGCTCGCGAACCCTTCTCGCCGTCCACAAGAGTCATG
CTCATGCGAGCGGGAGCAGACTACGCCGAGTACTTGCCGGGAAACGCAGA
TCGCCCGAGCAGCATCCGGCCTTTCCAGCATAGCCAATACACTTTTGGTT
TGGAGTCTGGCGCGGAAGGCTGCGCTACTACCGCGATGGACGATGGCGGC
GGCGGCGGCGATTACGCACTCCCTCGGCTGCGTAATCAGACGATCGCACC
GATAGGAACGGCCGGCGAAAAGGCGTTTTTGTCGTCACCAACCAGCCGTA
ACGGGAAGAGCTCCTCGTCCGTTTTCGGAGCGAGCGTGGCTCTACAAGGG
TTCGGATCCGCCGACTCTGCGCTACCCCCGCCACCTCCCCTCCCTCCCGT
CGGTGGCGGTGGCGGCAATAGCCATCCCGTATTGACCAACGCGCGCCTCG
CGCGACATGATGAAGAGGAAGCAGCCAAGCGCGTAGGCGAGATTTACAAC
AGCGGAGGGGTATCAGGCGTGGCGGGGGTAGAGGCAGCCGGATCTGGGCT
AGCCCACGAGAGGTCCGCCTTAGCGCGACGCACCGCGGCGGGCGGCTGGC
CTGGAATACCGGCCCAGCAACACAGGAGTGGTACACACAGGTTGATGTCG
TCATCGGTGGCGGAAGACTCCACGCGAGAGAAGGCGCTTCGAGGACTAGT
GGCTATTGGTGAGTTGCCGGCGGCGCCACGGTTGGCGTTCGTTGATCTCA
CTGGCGGTGGCAGGCAGCGTCAGCTTTCGGAGGAGACTGACGAGGAGGCC
TTGCAGAAGGCTATTCAGCTGTCGTTGCAGGGCATAGGGGTAAGTGGCAG
CGGCGGCGACCGCGGGGATTCTCCGGGAGACGAAACCGAGACGGACGAGG
AACCCGGCTATGGCGCTCATCCTTCGGTTGGAGAGGGCTCGCTGGGAATG
GTCCGCGAATCGTCGGCACATAACCAAGCACCTCCGCTGCCGACGCCTAA
TCCGCAGGGGTTTCCTCCCCCGCTGCCGCCCTCCATCAACAACTGCGGCG
GCCGAGATGGTGGTAGTGGAGGCAATGGCGACGATAGCAATTTGGTGCAG
CAGCTTCCAGGCCTAGCATCGGGAGCGCCAACGGCACCCGTCGATAATCA
AGACGCCGCCGCCGTTAGGCTTTCAGCCGCCAGCGGGAAAGACTGCCACC
GTGACAGGCAGGGAAGCAGCGGGAGCTACAGCGGGAGCGGTAGTAGCGGC
GATAGCGGGGACGGGGGCGATGGACGTGAAAGGGGGGCCGCGGGTCGAGG
GCACGAGAGCGACAATAATTGCTTCCGGCGTTTGAGACGGAGGAGGGACG
AGAGCGGCGCGAGCACTCCCGGGGAGCAGTCCCCAAACGGGGCAGACGGC
GCGCTCGAGCACCAAGAGGGTCACGAGGGGTATGCAGGAGTGGGCGGTGA
TTGTGTAGAGGGAGGCGCCGGGGGGGCAGCAGGCCGCGGTGGGCATCCGG
CCTTTCCAGCATAGCCAATACACTTTTGGTTTGGAGTCTGGCGCGGAAGG
CTGCGCTACTACCGCGATGGACGATGGCGGCGGCGGCGGCGATTACGCAC
TCCCTCGGCTGCGTAATCAGACGATCGCACCGATAGGAACGGCCGGCGAA
AAGGCGTTTTTGTCGTCACCAACCAGCCGTAACGGGAAGAGCTCCTCGTC
CGTTTTCGGAGCGAGCGTGGCTCTACAAGGGTTCGGATCCGCCGACTCTG
CGCTACCCCCGCCACCTCCCCTCCCTCCCGTCGGTGGCGGTGGCGGCAAT
AGCCATCCCGTATTGACCAACGCGCGCCTCGCGCGACATGATGAAGAGGA
AGCAGCCAAGCGCGTAGGCGAGATTTACAACAGCGGAGGGGTATCAGGCG
TGGCGGGGGTAGAGGCAGCCGGATCTGGGCTAGCCCACGAGAGGTCCGCC
TTAGCGCGACGCACCGCGGCGGGCGGCTGGCCTGGAATACCGGCCCAGCA
ACACAGGAGTGGTACACACAGGTTGATGTCGTCATCGGTGGCGGAAGACT
CCACGCGAGAGAAGGCGCTTCGAGGACTAGTGGCTATTGGTGAGTTGCCG
GCGGCGCCACGGTTGGCGTTCGTTGATCTCACTGGCGGTGGCAGGCAGCG
TCAGCTTTCGGAGGAGACTGACGAGGAGGCCTTGCAGAAGGCTATTCAGC
TGTCGTTGCAGGGCATAGGGGTAAGTGGCAGCGGCGGCGACCGCGGGGAT
TCTCCGGGAGACGAAACCGAGACGGACGAGGAACCCGGCTATGGCGCTCA
TCCTTCGGTTGGAGAGGGCTCGCTGGGAATGGTCCGCGAATCGTCGGCAC
ATAACCAAGCACCTCCGCTGCCGACGCCTAATCCGCAGGGGTTTCCTCCC
CCGCTGCCGCCCTCCATCAACAACTGCGGCGGCCGAGATGGTGGTAGTGG
AGGCAATGGCGACGATAGCAATTTGGTGCAGCAGCTTCCAGGCCTAGCAT
CGGGAGCGCCAACGGCACCCGTCGATAATCAAGACGCCGCCGCCGTTAGG
CTTTCAGCCGCCAGCGGGAAAGACTGCCACCGTGACAGGCAGGGAAGCAG
CGGGAGCTACAGCGGGAGCGGTAGTAGCGGCGATAGCGGGGACGGGGGCG
ATGGACGTGAAAGGGGGGCCGCGGGTCGAGGGCACGAGAGCGACAATAAT
TGCTTCCGGCGTTTGAGACGGAGGAGGGACGAGAGCGGCGCGAGCACTCC
CGGGGAGCAGTCCCCAAACGGGGCAGACGGCGCGCTCGAGCACCAAGAGG
GTCACGAGGGGTATGCAGGAGTGGGCGGTGATTGTGTAGAGGGAGGCGCC
GGGGGGGCAGCAGGCCGCGGTGGG
back to top