mRNA_H-paniculata_contig1646.3683.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1646.3683.1
Unique NamemRNA_H-paniculata_contig1646.3683.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1646.3683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1646contigH-paniculata_contig1646:3334..3982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size637
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1646.3683.1prot_H-paniculata_contig1646.3683.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1646 3659..3982 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929312.9321108-UTR-H-paniculata_contig1646:3333..35261622929312.9321108-UTR-H-paniculata_contig1646:3333..3526Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1646 3334..3526 +
1691480810.94098-UTR-H-paniculata_contig1646:3333..35261691480810.94098-UTR-H-paniculata_contig1646:3333..3526Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1646 3334..3526 +
1622929312.9448757-UTR-H-paniculata_contig1646:3540..36581622929312.9448757-UTR-H-paniculata_contig1646:3540..3658Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1646 3541..3658 +
1691480810.949829-UTR-H-paniculata_contig1646:3540..36581691480810.949829-UTR-H-paniculata_contig1646:3540..3658Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1646 3541..3658 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929312.9567885-CDS-H-paniculata_contig1646:3658..39821622929312.9567885-CDS-H-paniculata_contig1646:3658..3982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1646 3659..3982 +
1691480810.9578874-CDS-H-paniculata_contig1646:3658..39821691480810.9578874-CDS-H-paniculata_contig1646:3658..3982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1646 3659..3982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1646.3683.1

>prot_H-paniculata_contig1646.3683.1 ID=prot_H-paniculata_contig1646.3683.1|Name=mRNA_H-paniculata_contig1646.3683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MVCGLSGRLHERTAGMPLSDLKNVAKSTASRGPALTLGQSRYPGKFWKTR
AAATAAEVGSLVGNSSWQARHGLGTVLPAAGATALRKRHDLCTSPPPCRH
GSGTATYS
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mRNA from alignment at H-paniculata_contig1646:3334..3982+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1646.3683.1 ID=mRNA_H-paniculata_contig1646.3683.1|Name=mRNA_H-paniculata_contig1646.3683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=649bp|location=Sequence derived from alignment at H-paniculata_contig1646:3334..3982+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCGTTGCTCAGAGCCGCATTGACGTCGTGCACCCACTGCGCAAGGGTG
CGCTCCCAGCCCGGGGTCAAGGCCGCGAGGTATTCTTGCATGTGAGGGGC
GACGTAGTGTCTCCCATTTGCGAGACGCAGGAGAATATGTACTAGTATCG
CGTGTACCTGCTGAAACAGGGGGCGATACGCCGCCACTACATCGTCCCAA
GGTTAAGGCCGGTGGAACCTGGCGTGCGCATCACCTGGCAGACCCAGGAC
ATTACAAATAAGCGGGACCAGGAGGTACGATGTCGTACAACAGCGGTCGT
GGTGTCGCACATATCGGTCAAAGAGATGGTGTGCGGCCTCAGTGGCCGGT
TGCACGAACGAACTGCTGGGATGCCACTTTCCGACCTCAAGAATGTGGCG
AAATCGACGGCCTCGCGAGGGCCTGCGCTGACCCTTGGCCAGTCGAGGTA
CCCAGGGAAGTTTTGGAAGACCAGGGCAGCCGCCACTGCCGCCGAGGTCG
GTAGTCTGGTCGGCAATTCTTCTTGGCAGGCGAGGCACGGCCTAGGGACA
GTTCTCCCAGCCGCTGGGGCAACCGCCCTACGGAAAAGGCACGATTTGTG
CACCAGCCCGCCTCCATGCCGGCACGGCAGCGGCACGGCGACTTACTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1646:3334..3982+

>mRNA_H-paniculata_contig1646.3683.1 ID=mRNA_H-paniculata_contig1646.3683.1|Name=mRNA_H-paniculata_contig1646.3683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig1646:3334..3982+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTGCGGCCTCAGTGGCCGGTTGCACGAACGAACTGCTGGGATGCC
ACTTTCCGACCTCAAGAATGTGGCGAAATCGACGGCCTCGCGAGGGCCTG
CGCTGACCCTTGGCCAGTCGAGGTACCCAGGGAAGTTTTGGAAGACCAGG
GCAGCCGCCACTGCCGCCGAGGTCGGTAGTCTGGTCGGCAATTCTTCTTG
GCAGGCGAGGCACGGCCTAGGGACAGTTCTCCCAGCCGCTGGGGCAACCG
CCCTACGGAAAAGGCACGATTTGTGCACCAGCCCGCCTCCATGCCGGCAC
GGCAGCGGCACGGCGACTTACTCGATGGTGTGCGGCCTCAGTGGCCGGTT
GCACGAACGAACTGCTGGGATGCCACTTTCCGACCTCAAGAATGTGGCGA
AATCGACGGCCTCGCGAGGGCCTGCGCTGACCCTTGGCCAGTCGAGGTAC
CCAGGGAAGTTTTGGAAGACCAGGGCAGCCGCCACTGCCGCCGAGGTCGG
TAGTCTGGTCGGCAATTCTTCTTGGCAGGCGAGGCACGGCCTAGGGACAG
TTCTCCCAGCCGCTGGGGCAACCGCCCTACGGAAAAGGCACGATTTGTGC
ACCAGCCCGCCTCCATGCCGGCACGGCAGCGGCACGGCGACTTACTCG
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