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Homology
BLAST of mRNA_H-paniculata_contig16454.3682.1 vs. uniprot
Match: D8LHL7_ECTSI (Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHL7_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 3.560e-15 Identity = 42/72 (58.33%), Postives = 50/72 (69.44%), Query Frame = 1
Query: 142 GRLTQARASYRRGLAAYNDQSTTMGFKSPLDVLKQGIARAGAGPYDQEAVQRAVASYKS-DNKVVVFSWTTC 354
G +T S RR ++TTMGFKSP+DVLKQGIA+ GAGPYD++AV + V Y S NKVVVFSWT C
Sbjct: 47 GSVTARHRSVRR-----TTRTTTMGFKSPVDVLKQGIAKIGAGPYDKDAVVKVVDGYTSGSNKVVVFSWTRC 113
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Exons | 2 |
| Model size | 519 |
| Cds size | 312 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16454.3682.1 >prot_H-paniculata_contig16454.3682.1 ID=prot_H-paniculata_contig16454.3682.1|Name=mRNA_H-paniculata_contig16454.3682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MRSARQAIILLFSTLIVGAEAFLPPGRLTQARASYRRGLAAYNDQSTTMG
FKSPLDVLKQGIARAGAGPYDQEAVQRAVASYKSDNKVVVFSWTTCVAFE
GRE* back to topmRNA from alignment at H-paniculata_contig16454:1319..3798+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig16454.3682.1 ID=mRNA_H-paniculata_contig16454.3682.1|Name=mRNA_H-paniculata_contig16454.3682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2480bp|location=Sequence derived from alignment at H-paniculata_contig16454:1319..3798+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGCATGCACACTCTGAACTGAGTGCACAGAAAACGCACAAGAGGGCAA
CTACGCGATACAGAAGATGCGTTCCGCTCGGCAAGCCATCATTCTTCTAT
TTAGCACTCTGATTGTCGGTGCCGAGGCTTTCCTCCCTCCGGGTCGGTAA
GTTGGTGTTGTAAGAAAGAACCCTGGATGCTTTTTTCAAACTTTCAAACC
TGGGTTTACAGCTCGGGTAATGTATTGAGTCCTGGTTTCTACAAACATTA
TGCGTCGATACGTCGATACGCGCAGTACAGTACAGTCAGCTGTTGCTTCC
CGTCATGACAGTGATGCTGTTACAAGGTCGTATTTCAATGACACTATATG
TTTCATGATATCGGTGACGTTGCTCTTCCTGTCCCGGGGCGAATCGGTTG
TGCTGTTTTGACTCTGTCATCTTGATGAAGCACATGGGAAATTGGATGTT
GTTCAAGTTTCCTGATTTCCTTTGGACCCACTATTAGAACACGCCGCTGA
GGTGTTGCGTCTACTGACGGCTATCCTTCAGCCCTTTGACTCCTGCAAAA
AAAGATATATACTAAGAATAAATTTATTTGAAATTTATTTCAGGAAGCCC
AACGCCAAATTACGAATAACTACGTACCTTAGTTATCACCCGTGTTGTCA
TGTTCCGACCACGAGTATGGTAGGTTGCCTGCTAGACGAGTCTAAGCCCG
TTAGGGTAGGGCACGGCTAAAGGGTAACCTTTGCCGATGACCATGACAGG
AGTGTGATCAAGGGTTTTAACGTGACGATTCTGTACTTTTCATGGGAAGT
CTAAAACCGAATGTCAAAACGGCCAAGTCACGTACAACGGCTATCCCACA
ATATGCCCTAGGTTAAGCATGATGAATCGAAGGGATGACCGACACGACAG
TATTCCCCGCGTTCTGCGGGGTTCGGAAATCGGGGCACGGTAATTTTATC
GTGTCGTGGGCTTAAGCTCCTTCCCTCACAACGCTTCTGAGTCGTAAAGG
TGATTCTTTACGCTTTGGGGTGGAAAGGAAAGAAAGGTTGCCTGCTGTGC
TGTGTCTGTCTCTACCATCACGCTTAACAGGACCGCATAAACATATCGGC
TATCATTTGCTAGGGAATTCGCAGGAAATGCTGGTGCGTGCAACCTCTCT
CCCTACTTTCTTTATCGTGTTGCCGTTTCCGTAACCACAGTGTCACCGCG
TAGATATGTGCACTGCTGTTTGTTCCGTGACCGTGCGTAACTCTAACTGA
CTGTACCATGCTATTTGCGCTGTCCAGTTGGCTGTCACCGCTCGATGAAA
CCGATGTATGTTCTGCAGTCTTTCAGCTGGACTATCTCCACATCAACTGT
TAAGCACGTGGCGTTGCGACTGGGGCACACCAGTCGGAGACCTACCAGGG
CTGAAATTGAAACAATGAGCTGTGACCCATTTCGCTCCTAGCGTCACATA
ATCTTAAAGAGCTCCACTACTTTTGGTATACATTTCATTTCATGCCACAT
GATTAGATTCTTTTCGCAATGTAAAAATAACACACCAGTATCATATTACA
CCCGCAAAAAGGATTTTCGTGTGTCGCAAGACGTCCCTCCCCCCCTCGTG
TGGCACGGGACTGAAATTTTTGCCTGTCACAGGATGTCACACCCCAGGCC
CTCAGGAGTCAAGGGATTAGTCAACCCTTCTGGTGCCACCGTTCCATTAT
TCCGAACATTGGAGTTGATAGTCCAGGGCTCTTGCGGCTGGGGTGTGTGT
GTCATGTGAGAACGTGTGAACGAGAAAGAAAGAACATCGGATTGATGGAT
TGGTTGATTCCGAAATACAAACACTGCCATGTTAGCTTGCAAGTGCGTCT
GCACTGCGTGTATCGGTTTCATACTGTAGAGAATGTTACATACACACCAG
ATATAAACAAACTAGAAAAACTAAACTGATAATTTTACCTTTTTTTTGGT
CTAACCCCCCCCCTTCCCTCCCTCCGCCATATCTGGCAACGTAGGAAAGA
GTGATTGGCCATCGAAAAATTCTCCAACAGGGACAACAAAATCTCCGTCC
TCCCGATTACGCGTGGTCTAACCCCCCCCGCGCTCCCCGTCCTATTCCCC
TATATAGCCTCACGCAGGCGCGCGCCTCGTACCGTCGAGGGCTCGCGGCC
TACAACGACCAGTCGACAACGATGGGTTTCAAGAGCCCGCTAGATGTGTT
GAAGCAAGGGATTGCTAGGGCCGGGGCGGGCCCCTACGATCAAGAGGCAG
TGCAACGTGCGGTGGCGAGCTACAAGTCGGACAACAAGGTCGTCGTGTTT
TCGTGGACCACGTGCGTTGCTTTTGAGGGAAGGGAGTGAAGGAGGATGGG
GAAGAGTTACGCTCATATAGTGAAGTCTGATGTACCTTTTTTGAGGTTAT
GCCGCTGATCTCAGTTGGGGTAGTGAAGTATTTAAGCATGTTCTACGCTC
CCAATACCTTGGAAGAAAAGCAGGCTTGCA back to topCoding sequence (CDS) from alignment at H-paniculata_contig16454:1319..3798+ >mRNA_H-paniculata_contig16454.3682.1 ID=mRNA_H-paniculata_contig16454.3682.1|Name=mRNA_H-paniculata_contig16454.3682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig16454:1319..3798+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTTCCGCTCGGCAAGCCATCATTCTTCTATTTAGCACTCTGATTGT
CGGTGCCGAGGCTTTCCTCCCTCCGGGTCGATGCGTTCCGCTCGGCAAGC
CATCATTCTTCTATTTAGCACTCTGATTGTCGGTGCCGAGGCTTTCCTCC
CTCCGGGTCGCCTCACGCAGGCGCGCGCCTCGTACCGTCGAGGGCTCGCG
GCCTACAACGACCAGTCGACAACGATGGGTTTCAAGAGCCCGCTAGATGT
GTTGAAGCAAGGGATTGCTAGGGCCGGGGCGGGCCCCTACGATCAAGAGG
CAGTGCAACGTGCGGTGGCGAGCTACAAGTCGGACAACAAGGTCGTCGTG
TTTTCGTGGACCACGTGCGTTGCTTTTGAGGGAAGGGAGTGACCTCACGC
AGGCGCGCGCCTCGTACCGTCGAGGGCTCGCGGCCTACAACGACCAGTCG
ACAACGATGGGTTTCAAGAGCCCGCTAGATGTGTTGAAGCAAGGGATTGC
TAGGGCCGGGGCGGGCCCCTACGATCAAGAGGCAGTGCAACGTGCGGTGG
CGAGCTACAAGTCGGACAACAAGGTCGTCGTGTTTTCGTGGACCACGTGC
GTTGCTTTTGAGGGAAGGGAGTGA back to top
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