mRNA_H-paniculata_contig1644.3675.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1644.3675.1
Unique NamemRNA_H-paniculata_contig1644.3675.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1644.3675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1644contigH-paniculata_contig1644:23632..24187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size558
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929311.8773186-UTR-H-paniculata_contig1644:23631..238361622929311.8773186-UTR-H-paniculata_contig1644:23631..23836Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1644 23632..23836 +
1691480810.5380878-UTR-H-paniculata_contig1644:23631..238361691480810.5380878-UTR-H-paniculata_contig1644:23631..23836Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1644 23632..23836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929311.889568-CDS-H-paniculata_contig1644:23836..241871622929311.889568-CDS-H-paniculata_contig1644:23836..24187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1644 23837..24187 +
1691480810.548898-CDS-H-paniculata_contig1644:23836..241871691480810.548898-CDS-H-paniculata_contig1644:23836..24187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1644 23837..24187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1644.3675.1prot_H-paniculata_contig1644.3675.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1644 23837..24187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1644.3675.1

>prot_H-paniculata_contig1644.3675.1 ID=prot_H-paniculata_contig1644.3675.1|Name=mRNA_H-paniculata_contig1644.3675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MVDVAALADGGGESVGVVVRLRPEEEESNTIVISKDGQGLAGSCILCADT
KRLTIVDPGRSDSGRPSNCSSNGRSGSQNKNDGKRAHDFAFDRVFGPAAT
QAEVFETFKPLVHTTVD
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mRNA from alignment at H-paniculata_contig1644:23632..24187+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1644.3675.1 ID=mRNA_H-paniculata_contig1644.3675.1|Name=mRNA_H-paniculata_contig1644.3675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=556bp|location=Sequence derived from alignment at H-paniculata_contig1644:23632..24187+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTAAGAGTATGTCTACGGGTCAAGATGGAGAATCTATTCAATTTCTTTCA
TTTCTTCTGCATCATGTATTGCCTGCAGTCCACGATCAAGCTACGTTGTG
AGCGGGCTGTTCTGCCTTTACTATCTCTTTTAGCCAACAAGCTACGACGC
AACGAAGATATCTCTAACTGCATTTTGGAAGTGGAGTAGAAGTGGTGCTG
CTAGTATGGTCGATGTAGCAGCACTGGCCGATGGTGGTGGCGAATCCGTA
GGCGTCGTCGTCCGTTTGCGGCCAGAGGAGGAAGAAAGCAACACGATAGT
CATCTCGAAAGACGGCCAAGGGCTGGCTGGGTCGTGTATCCTATGCGCTG
ACACTAAGAGGCTTACGATAGTGGATCCAGGCCGCAGTGACAGTGGTAGA
CCCAGCAATTGTAGCAGCAATGGCAGGAGCGGCAGCCAGAACAAGAATGA
CGGCAAGCGAGCTCATGATTTCGCGTTCGATCGCGTGTTTGGCCCTGCTG
CGACCCAGGCCGAGGTGTTCGAGACTTTCAAGCCCCTCGTGCATACCACT
GTTGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig1644:23632..24187+

>mRNA_H-paniculata_contig1644.3675.1 ID=mRNA_H-paniculata_contig1644.3675.1|Name=mRNA_H-paniculata_contig1644.3675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig1644:23632..24187+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCGATGTAGCAGCACTGGCCGATGGTGGTGGCGAATCCGTAGGCGT
CGTCGTCCGTTTGCGGCCAGAGGAGGAAGAAAGCAACACGATAGTCATCT
CGAAAGACGGCCAAGGGCTGGCTGGGTCGTGTATCCTATGCGCTGACACT
AAGAGGCTTACGATAGTGGATCCAGGCCGCAGTGACAGTGGTAGACCCAG
CAATTGTAGCAGCAATGGCAGGAGCGGCAGCCAGAACAAGAATGACGGCA
AGCGAGCTCATGATTTCGCGTTCGATCGCGTGTTTGGCCCTGCTGCGACC
CAGGCCGAGGTGTTCGAGACTTTCAAGCCCCTCGTGCATACCACTGTTGA
CATGGTCGATGTAGCAGCACTGGCCGATGGTGGTGGCGAATCCGTAGGCG
TCGTCGTCCGTTTGCGGCCAGAGGAGGAAGAAAGCAACACGATAGTCATC
TCGAAAGACGGCCAAGGGCTGGCTGGGTCGTGTATCCTATGCGCTGACAC
TAAGAGGCTTACGATAGTGGATCCAGGCCGCAGTGACAGTGGTAGACCCA
GCAATTGTAGCAGCAATGGCAGGAGCGGCAGCCAGAACAAGAATGACGGC
AAGCGAGCTCATGATTTCGCGTTCGATCGCGTGTTTGGCCCTGCTGCGAC
CCAGGCCGAGGTGTTCGAGACTTTCAAGCCCCTCGTGCATACCACTGTTG
AC
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