mRNA_H-paniculata_contig1644.3674.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1644.3674.1
Unique NamemRNA_H-paniculata_contig1644.3674.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1644.3674.1 vs. uniprot
Match: A0A6H5L4U1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U1_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 5.580e-35
Identity = 59/116 (50.86%), Postives = 83/116 (71.55%), Query Frame = 1 
Query:    1 RGCKLWLGGNWKGRTGT-SLFRQQPNVLVVDDYKCHRDQKFQESLNKEVNIDTILIPGGLTAVNQPCDWMLNKEMKRGVRVKYTAWSATTMADPKRGKFKPPGRGAVSTWVKKAWD 345
            R C  W+ G+WK R    S+ +Q+P +LV+DD+KCH+D+ F  +L ++ N   I IPGG+T + QP D +LNK+MKR +R KYTA+SA+ +AD + GK KPP RG VSTW K+AW+
Sbjct:   91 RECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIIIFIPGGMTLLLQPLDRLLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWE 206
[Close]
BLAST of mRNA_H-paniculata_contig1644.3674.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.970e-34
Identity = 60/116 (51.72%), Postives = 84/116 (72.41%), Query Frame = 1 
Query:    1 RGCKLWLGGNWKGRTGT-SLFRQQPNVLVVDDYKCHRDQKFQESLNKEVNIDTILIPGGLTAVNQPCDWMLNKEMKRGVRVKYTAWSATTMADPKRGKFKPPGRGAVSTWVKKAWD 345
            R C  W+ G+WK R    S+ +Q+P +LV+DD+KCH+D+ +  +L ++ N   I+IPGGLT + QP D MLNK+MKR +R KYTA+SA+ +AD + GK KPP RG VSTW K+AW+
Sbjct:  230 RECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWE 345
[Close]
BLAST of mRNA_H-paniculata_contig1644.3674.1 vs. uniprot
Match: A0A6H5L467_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L467_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.590e-34
Identity = 58/116 (50.00%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:    1 RGCKLWLGGNWKGRTGT-SLFRQQPNVLVVDDYKCHRDQKFQESLNKEVNIDTILIPGGLTAVNQPCDWMLNKEMKRGVRVKYTAWSATTMADPKRGKFKPPGRGAVSTWVKKAWD 345
            R C  W+ G+W  R    S+ +Q+P +LV+DD+KCH+D+ F  +L  + N   I IPGGL  + QP D MLNK+MKR +R KYTA+SA+ +AD + GK KPP RG VSTW K+ W+
Sbjct:   14 RECNGWISGSWNLRPNNGSIVQQRPCILVLDDFKCHKDESFIAALKNDANTIVIFIPGGLAPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKQKPPERGVVSTWCKEEWE 129
[Close]
BLAST of mRNA_H-paniculata_contig1644.3674.1 vs. uniprot
Match: A0A6H5JTI5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI5_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.590e-34
Identity = 58/116 (50.00%), Postives = 80/116 (68.97%), Query Frame = 1 
Query:    1 RGCKLWLGGNWKGRTGT-SLFRQQPNVLVVDDYKCHRDQKFQESLNKEVNIDTILIPGGLTAVNQPCDWMLNKEMKRGVRVKYTAWSATTMADPKRGKFKPPGRGAVSTWVKKAWD 345
            R C  W+ G+WK R    S+ +Q+P +LV+DD+KCH+ + F  +L ++ N   I IPGGLT + QP D MLNK+MKR +  KYTA+SA+ + D + GK KPP RG VSTW K+AW+
Sbjct:   14 RECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKAEGFMAALKRDANTMVIFIPGGLTPLVQPLDRMLNKQMKRLLWGKYTAYSASAVIDARSGKLKPPERGVVSTWCKEAWE 129
[Close]
BLAST of mRNA_H-paniculata_contig1644.3674.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.450e-33
Identity = 60/124 (48.39%), Postives = 85/124 (68.55%), Query Frame = 1 
Query:    1 RGCKLWLGGNWKGRTGT-SLFRQQPNVLVVDDYKCHRDQKFQESLNKEVNIDTILIPGGLTAVNQPCDWMLNKEMKRGVRVKYTAWSATTMADPKRGKFKPPGRGAVSTWVKKAWDQTPADLAR 369
            R C  W+ G+WK R    S+ +Q+P +LV+DD+KCH+D+ F  +L ++ N   I IPG LT + QP D MLNK+MKR +R KYTA+SA+ +AD + GK KPP RG VSTW K+AW+ +  +  +
Sbjct:  230 RECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESSTPETVK 353
[Close]
BLAST of mRNA_H-paniculata_contig1644.3674.1 vs. uniprot
Match: A0A6H5L8W0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8W0_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.660e-33
Identity = 58/116 (50.00%), Postives = 81/116 (69.83%), Query Frame = 1 
Query:    1 RGCKLWLGGNWKGRTGT-SLFRQQPNVLVVDDYKCHRDQKFQESLNKEVNIDTILIPGGLTAVNQPCDWMLNKEMKRGVRVKYTAWSATTMADPKRGKFKPPGRGAVSTWVKKAWD 345
            R C  W+ G+WK R    S+ +Q+P +LV+DD+KC +D+ F  +L ++ N   I IPGGLT + QP D +LNK+MKR +R KYTA+SA+ +AD + GK KPP RG VSTW  +AW+
Sbjct:   14 RECNGWISGSWKFRPNNGSIVQQRPCILVLDDFKCRKDEGFIAALKRDANTIAIFIPGGLTPLLQPLDRVLNKQMKRMLRGKYTAYSASAVADARSGKLKPPERGVVSTWCTEAWE 129
[Close]
BLAST of mRNA_H-paniculata_contig1644.3674.1 vs. uniprot
Match: A0A6H5KT06_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT06_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.940e-33
Identity = 59/116 (50.86%), Postives = 80/116 (68.97%), Query Frame = 1 
Query:    1 RGCKLWLGGNWKGRTGT-SLFRQQPNVLVVDDYKCHRDQKFQESLNKEVNIDTILIPGGLTAVNQPCDWMLNKEMKRGVRVKYTAWSATTMADPKRGKFKPPGRGAVSTWVKKAWD 345
            R C  W+ G WK R    S+ +Q+P +LV+DD+K H+D+ F  +L ++ N   I IPGGLT + QP D MLNK+MKR +R KY A+SA+ +AD + GK KPP RG VSTW K+AW+
Sbjct:  111 RECNGWISGRWKLRPNNGSIVQQRPCILVLDDFKRHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDCMLNKQMKRLLRGKYIAYSASAVADARSGKLKPPERGVVSTWCKEAWE 226
[Close]
BLAST of mRNA_H-paniculata_contig1644.3674.1 vs. uniprot
Match: A0A6H5JBJ7_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ7_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 3.250e-33
Identity = 59/116 (50.86%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:    1 RGCKLWLGGNWKGRTGT-SLFRQQPNVLVVDDYKCHRDQKFQESLNKEVNIDTILIPGGLTAVNQPCDWMLNKEMKRGVRVKYTAWSATTMADPKRGKFKPPGRGAVSTWVKKAWD 345
            R C  W+ G+WK R    S+ +Q+  +LV+DD+KCH+ + F   L ++ N   I IPGG T + QP D MLNK+MKR +R KYTA+SA+ +AD + GK KPP RG VSTW KKAW+
Sbjct:   14 RECNGWISGSWKLRPNNGSIIQQRLCILVLDDFKCHKGEGFIAPLKRDANTIVIFIPGGWTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKKAWE 129
[Close]
BLAST of mRNA_H-paniculata_contig1644.3674.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 3.470e-33
Identity = 60/116 (51.72%), Postives = 81/116 (69.83%), Query Frame = 1 
Query:    1 RGCKLWLGGNWKGRTGT-SLFRQQPNVLVVDDYKCHRDQKFQESLNKEVNIDTILIPGGLTAVNQPCDWMLNKEMKRGVRVKYTAWSATTMADPKRGKFKPPGRGAVSTWVKKAWD 345
            R C  W+ G+WK R    S+ +Q+P +LV+DD+KCH D+ F  +L ++ N   I IPGGLT + QP D MLNK+MKR +R KYTA+S + +AD + GK KPP RG VSTW K+AW+
Sbjct:  425 RECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSPSAVADARSGKLKPPERGVVSTWCKEAWE 540
[Close]
BLAST of mRNA_H-paniculata_contig1644.3674.1 vs. uniprot
Match: A0A6H5KQK9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK9_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 9.300e-33
Identity = 59/116 (50.86%), Postives = 80/116 (68.97%), Query Frame = 1 
Query:    1 RGCKLWLGGNWKGRTGT-SLFRQQPNVLVVDDYKCHRDQKFQESLNKEVNIDTILIPGGLTAVNQPCDWMLNKEMKRGVRVKYTAWSATTMADPKRGKFKPPGRGAVSTWVKKAWD 345
            R C  W+ G+WK R    S+ +Q+P +LV+DD KCH+ + F  +L ++ N   I IPGGLT + QP D MLNK+MKR +R KYTA+S + +AD + GK KPP RG VSTW K+AW+
Sbjct:  111 RECNGWISGSWKLRPNNGSIVQQRPCILVLDDVKCHKYEGFIAALKRDANTMVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSTSAVADARSGKLKPPERGVVSTWCKEAWE 226
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1644.3674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4U1_9PHAE5.580e-3550.86DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE1.970e-3451.72DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L467_9PHAE2.590e-3450.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JTI5_9PHAE2.590e-3450.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE1.450e-3348.39DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L8W0_9PHAE1.660e-3350.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KT06_9PHAE2.940e-3350.86DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JBJ7_9PHAE3.250e-3350.86DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE3.470e-3351.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQK9_9PHAE9.300e-3350.86DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1644contigH-paniculata_contig1644:11926..12297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue2.9e-15
Seed eggNOG ortholog2880.D7FXD3
Preferred namePOGK
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA binding
EggNOG OGsKOG3105@1,KOG3105@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929311.8362691-CDS-H-paniculata_contig1644:11925..122971622929311.8362691-CDS-H-paniculata_contig1644:11925..12297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1644 11926..12297 -
1691480810.52546-CDS-H-paniculata_contig1644:11925..122971691480810.52546-CDS-H-paniculata_contig1644:11925..12297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1644 11926..12297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1644.3674.1prot_H-paniculata_contig1644.3674.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1644 11926..12297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1644.3674.1

>prot_H-paniculata_contig1644.3674.1 ID=prot_H-paniculata_contig1644.3674.1|Name=mRNA_H-paniculata_contig1644.3674.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
RGCKLWLGGNWKGRTGTSLFRQQPNVLVVDDYKCHRDQKFQESLNKEVNI
DTILIPGGLTAVNQPCDWMLNKEMKRGVRVKYTAWSATTMADPKRGKFKP
PGRGAVSTWVKKAWDQTPADLARK
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mRNA from alignment at H-paniculata_contig1644:11926..12297-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1644.3674.1 ID=mRNA_H-paniculata_contig1644.3674.1|Name=mRNA_H-paniculata_contig1644.3674.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=372bp|location=Sequence derived from alignment at H-paniculata_contig1644:11926..12297- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGGGTGCAAGCTTTGGCTGGGGGGAAATTGGAAGGGTCGCACGGGGAC
AAGCTTGTTTAGACAACAACCGAACGTGTTGGTGGTCGACGACTACAAGT
GCCACCGTGACCAGAAGTTCCAGGAGAGCTTGAACAAGGAGGTCAACATC
GACACCATCCTCATTCCTGGCGGCCTAACAGCAGTTAACCAGCCTTGCGA
CTGGATGCTCAACAAGGAGATGAAGCGCGGAGTGCGCGTAAAATACACTG
CATGGAGCGCCACTACCATGGCAGACCCGAAAAGGGGTAAATTCAAGCCC
CCTGGGAGGGGCGCGGTGTCAACGTGGGTCAAGAAGGCCTGGGACCAAAC
ACCAGCCGACCTGGCGAGAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1644:11926..12297-

>mRNA_H-paniculata_contig1644.3674.1 ID=mRNA_H-paniculata_contig1644.3674.1|Name=mRNA_H-paniculata_contig1644.3674.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig1644:11926..12297- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGGGTGCAAGCTTTGGCTGGGGGGAAATTGGAAGGGTCGCACGGGGAC
AAGCTTGTTTAGACAACAACCGAACGTGTTGGTGGTCGACGACTACAAGT
GCCACCGTGACCAGAAGTTCCAGGAGAGCTTGAACAAGGAGGTCAACATC
GACACCATCCTCATTCCTGGCGGCCTAACAGCAGTTAACCAGCCTTGCGA
CTGGATGCTCAACAAGGAGATGAAGCGCGGAGTGCGCGTAAAATACACTG
CATGGAGCGCCACTACCATGGCAGACCCGAAAAGGGGTAAATTCAAGCCC
CCTGGGAGGGGCGCGGTGTCAACGTGGGTCAAGAAGGCCTGGGACCAAAC
ACCAGCCGACCTGGCGAGAAAGCGGGGGTGCAAGCTTTGGCTGGGGGGAA
ATTGGAAGGGTCGCACGGGGACAAGCTTGTTTAGACAACAACCGAACGTG
TTGGTGGTCGACGACTACAAGTGCCACCGTGACCAGAAGTTCCAGGAGAG
CTTGAACAAGGAGGTCAACATCGACACCATCCTCATTCCTGGCGGCCTAA
CAGCAGTTAACCAGCCTTGCGACTGGATGCTCAACAAGGAGATGAAGCGC
GGAGTGCGCGTAAAATACACTGCATGGAGCGCCACTACCATGGCAGACCC
GAAAAGGGGTAAATTCAAGCCCCCTGGGAGGGGCGCGGTGTCAACGTGGG
TCAAGAAGGCCTGGGACCAAACACCAGCCGACCTGGCGAGAAAG
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