mRNA_H-paniculata_contig1643.3671.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1643.3671.1
Unique NamemRNA_H-paniculata_contig1643.3671.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1643.3671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1643contigH-paniculata_contig1643:22316..22781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size215
Cds size153
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1643.3671.1prot_H-paniculata_contig1643.3671.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1643 22316..22719 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929311.1297526-CDS-H-paniculata_contig1643:22315..223401622929311.1297526-CDS-H-paniculata_contig1643:22315..22340Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1643 22316..22340 +
1691480810.2534604-CDS-H-paniculata_contig1643:22315..223401691480810.2534604-CDS-H-paniculata_contig1643:22315..22340Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1643 22316..22340 +
1622929311.251909-CDS-H-paniculata_contig1643:22591..227191622929311.251909-CDS-H-paniculata_contig1643:22591..22719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1643 22592..22719 +
1691480810.2707539-CDS-H-paniculata_contig1643:22591..227191691480810.2707539-CDS-H-paniculata_contig1643:22591..22719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1643 22592..22719 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929311.2680116-UTR-H-paniculata_contig1643:22719..227811622929311.2680116-UTR-H-paniculata_contig1643:22719..22781Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1643 22720..22781 +
1691480810.2781577-UTR-H-paniculata_contig1643:22719..227811691480810.2781577-UTR-H-paniculata_contig1643:22719..22781Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1643 22720..22781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1643.3671.1

>prot_H-paniculata_contig1643.3671.1 ID=prot_H-paniculata_contig1643.3671.1|Name=mRNA_H-paniculata_contig1643.3671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
SVAARLPEGKSHHSLHRLSASQERVFKKHIREGANVTHADWMASMLVNDR
*
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mRNA from alignment at H-paniculata_contig1643:22316..22781+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1643.3671.1 ID=mRNA_H-paniculata_contig1643.3671.1|Name=mRNA_H-paniculata_contig1643.3671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=466bp|location=Sequence derived from alignment at H-paniculata_contig1643:22316..22781+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGTAGCTGCCAGGTTACCCGAAGGCGAGTTCCATCAGGTTCTACTGCT
GTTGTCTTGCTGTTTCTGAGGCTGTCTGTTTTCATTTGTACATTGGTTTG
TATTGTTGCTTGTACTTGTGTCTGTAAAGTGGTCTGTTTGAACTGTTCCT
TTGTACTGTTGCTTTGTACTGTTGTATGCACGTACTTGCAGGGCTGCTAC
TACGACAAGAATGCTGTTTTTGTATATCTTGACTGCTGTACGCGCCGTCC
TCCCTGTTGCTTACTTTATCCAACAGGGAAGTCTCACCACAGCTTGCATC
GACTGAGCGCCTCGCAGGAGAGGGTGTTCAAGAAACACATTAGGGAAGGG
GCTAATGTGACACATGCGGATTGGATGGCGTCGATGCTCGTGAACGATCG
ATAGAAGCGGTGCCTCACGCGTGCGTGGACGAGGCGCCAGGAGAAAGTGG
CCAAGAAGTTCGCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1643:22316..22781+

>mRNA_H-paniculata_contig1643.3671.1 ID=mRNA_H-paniculata_contig1643.3671.1|Name=mRNA_H-paniculata_contig1643.3671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig1643:22316..22781+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGTAGCTGCCAGGTTACCCGAAGTCGGTAGCTGCCAGGTTACCCGAAG
GGAAGTCTCACCACAGCTTGCATCGACTGAGCGCCTCGCAGGAGAGGGTG
TTCAAGAAACACATTAGGGAAGGGGCTAATGTGACACATGCGGATTGGAT
GGCGTCGATGCTCGTGAACGATCGATAGGGAAGTCTCACCACAGCTTGCA
TCGACTGAGCGCCTCGCAGGAGAGGGTGTTCAAGAAACACATTAGGGAAG
GGGCTAATGTGACACATGCGGATTGGATGGCGTCGATGCTCGTGAACGAT
CGATAG
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