mRNA_H-paniculata_contig16383.3647.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16383.3647.1
Unique NamemRNA_H-paniculata_contig16383.3647.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16383.3647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16383contigH-paniculata_contig16383:3799..4402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size604
Cds size486
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929307.4768279-UTR-H-paniculata_contig16383:3798..39161622929307.4768279-UTR-H-paniculata_contig16383:3798..3916Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16383 3799..3916 +
1691480808.6249125-UTR-H-paniculata_contig16383:3798..39161691480808.6249125-UTR-H-paniculata_contig16383:3798..3916Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16383 3799..3916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929307.566369-CDS-H-paniculata_contig16383:3916..44021622929307.566369-CDS-H-paniculata_contig16383:3916..4402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16383 3917..4402 +
1691480808.6364107-CDS-H-paniculata_contig16383:3916..44021691480808.6364107-CDS-H-paniculata_contig16383:3916..4402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16383 3917..4402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16383.3647.1prot_H-paniculata_contig16383.3647.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16383 3917..4402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16383.3647.1

>prot_H-paniculata_contig16383.3647.1 ID=prot_H-paniculata_contig16383.3647.1|Name=mRNA_H-paniculata_contig16383.3647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
MLTRSSNTIYFDVCHLRLSAECGGVQYAVVSYILECGCGTQVTGWQDVRV
SGATMLVRRWNEAPSHACCPFSPGGFLCLTPQRAKSCHHVARNCVDRVPW
LVVGCGRQVNRTAPTHCRKSIQIHGIVPSKKDEPGPICKRSGSLPPDHSD
LGTKISFIMEDI
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mRNA from alignment at H-paniculata_contig16383:3799..4402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16383.3647.1 ID=mRNA_H-paniculata_contig16383.3647.1|Name=mRNA_H-paniculata_contig16383.3647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=604bp|location=Sequence derived from alignment at H-paniculata_contig16383:3799..4402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGATCTATCTGTTTTTCTAGTCTAATTTTCTGTTTTCGGTTGTCGAAGA
CGTTTTTTTTTTTTGTTCACGATATTTGACCTTCGCTTGCGAGAACACAT
ATGGGCTAATGTGAAATCATGCTGACGCGATCGAGCAATACCATCTATTT
TGATGTCTGCCATTTGCGCCTCTCTGCGGAATGTGGTGGCGTGCAATATG
CTGTCGTGTCGTATATCCTGGAGTGCGGATGCGGAACTCAGGTAACGGGG
TGGCAAGATGTGCGCGTCAGTGGCGCGACGATGTTAGTCAGGCGGTGGAA
TGAAGCACCTAGTCATGCTTGTTGCCCGTTTTCTCCCGGAGGTTTTCTCT
GCCTCACCCCTCAACGCGCGAAGAGCTGCCATCACGTTGCGCGGAACTGC
GTAGATAGGGTTCCTTGGTTGGTGGTTGGCTGCGGACGGCAAGTAAACCG
AACAGCTCCAACTCACTGTCGGAAGAGCATTCAAATTCACGGGATTGTAC
CTTCCAAAAAAGATGAGCCAGGCCCGATATGTAAAAGAAGTGGTTCGTTG
CCTCCAGATCATTCCGATTTGGGTACCAAAATTTCATTTATCATGGAAGA
CATC
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Coding sequence (CDS) from alignment at H-paniculata_contig16383:3799..4402+

>mRNA_H-paniculata_contig16383.3647.1 ID=mRNA_H-paniculata_contig16383.3647.1|Name=mRNA_H-paniculata_contig16383.3647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig16383:3799..4402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGACGCGATCGAGCAATACCATCTATTTTGATGTCTGCCATTTGCG
CCTCTCTGCGGAATGTGGTGGCGTGCAATATGCTGTCGTGTCGTATATCC
TGGAGTGCGGATGCGGAACTCAGGTAACGGGGTGGCAAGATGTGCGCGTC
AGTGGCGCGACGATGTTAGTCAGGCGGTGGAATGAAGCACCTAGTCATGC
TTGTTGCCCGTTTTCTCCCGGAGGTTTTCTCTGCCTCACCCCTCAACGCG
CGAAGAGCTGCCATCACGTTGCGCGGAACTGCGTAGATAGGGTTCCTTGG
TTGGTGGTTGGCTGCGGACGGCAAGTAAACCGAACAGCTCCAACTCACTG
TCGGAAGAGCATTCAAATTCACGGGATTGTACCTTCCAAAAAAGATGAGC
CAGGCCCGATATGTAAAAGAAGTGGTTCGTTGCCTCCAGATCATTCCGAT
TTGGGTACCAAAATTTCATTTATCATGGAAGACATCATGCTGACGCGATC
GAGCAATACCATCTATTTTGATGTCTGCCATTTGCGCCTCTCTGCGGAAT
GTGGTGGCGTGCAATATGCTGTCGTGTCGTATATCCTGGAGTGCGGATGC
GGAACTCAGGTAACGGGGTGGCAAGATGTGCGCGTCAGTGGCGCGACGAT
GTTAGTCAGGCGGTGGAATGAAGCACCTAGTCATGCTTGTTGCCCGTTTT
CTCCCGGAGGTTTTCTCTGCCTCACCCCTCAACGCGCGAAGAGCTGCCAT
CACGTTGCGCGGAACTGCGTAGATAGGGTTCCTTGGTTGGTGGTTGGCTG
CGGACGGCAAGTAAACCGAACAGCTCCAACTCACTGTCGGAAGAGCATTC
AAATTCACGGGATTGTACCTTCCAAAAAAGATGAGCCAGGCCCGATATGT
AAAAGAAGTGGTTCGTTGCCTCCAGATCATTCCGATTTGGGTACCAAAAT
TTCATTTATCATGGAAGACATC
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