mRNA_H-paniculata_contig16320.3624.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16320.3624.1 vs. uniprot
Match: A0A2G2XPK2_CAPBA (DNA-directed RNA polymerase n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2XPK2_CAPBA) HSP 1 Score: 143 bits (361), Expect = 2.310e-35 Identity = 88/271 (32.47%), Postives = 150/271 (55.35%), Query Frame = 1
Query: 4 KQFEQDIANEIGLQIQRLRSVQGRE---ALRQLCAESGIKQELSATYTPQQNDVAERSWHSVFEMTRSKMITVNIGRRYWAEAARATIGGNREEDSGAAM-----LIAKVEDTSNPTGSVS----------------EEESKSAAEALKSPEADKWRAAMDEEWRTLMKNRTWESEDSGRLPVGRKAICTKWIFKRKLKEDGSVVRYKARLVTQGFSQVEGEDVFETSAPVARMSTLRTFFSLAVEHDFELEGMDVDAVYLNAPVEEELFV 744
+Q++ ++ N++ +I+ +RS +G E Q+C E+GI + A Y+PQ N +AER ++ EM + +I+ + + W +A E+ SG + L V + NP S E E ++ EA+ S ++ W+ A++ E +++ N TWE D LP G K + +KWIFKRK+K DG++ +YKARL+ +GF+Q EG D F+T +PV R++++R +LA +D ++ MDV +LN +EEE+++
Sbjct: 207 RQYKTEVENQLDKRIKIIRSDRGGEYESPFAQICVENGIIHQTMAPYSPQSNGIAERKNRTLKEMMNALLISSGLPQNLWGDAFLT-----HEQSSGGSKGPRDELSENVHNEENPRYSTRQRMSTLFGSDFVTFLLENEPRTFKEAMSSSDSSFWKEAVNSEIDSILSNHTWELVD---LPPGNKPLGSKWIFKRKIKTDGTIDKYKARLIVKGFNQKEGLDYFDTYSPVTRITSIRMLIALAAVYDLQIHQMDVKTAFLNGELEEEIYM 469
BLAST of mRNA_H-paniculata_contig16320.3624.1 vs. uniprot
Match: A0A438JRR5_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JRR5_VITVI) HSP 1 Score: 135 bits (339), Expect = 2.030e-32 Identity = 93/269 (34.57%), Postives = 142/269 (52.79%), Query Frame = 1
Query: 4 KQFEQDIANEIGLQIQRLRSVQGRE----ALRQLCAESGIKQELSATYTPQQNDVAERSWHSVFEMTRSKMITVNIGRRYWAEAARATIGGNREEDSGAAM------------------LIAKVEDTSNPTGSVSEEESKSAAEALKSPEADKWRAAMDEEWRTLMKNRTWESEDSGRLPVGRKAICTKWIFKRKLKEDGSVVRYKARLVTQGFSQVEGEDVFETSAPVARMSTLRTFFSLAVEHDFELEGMDVDAVYLNAPVEEELFV 744
++F+ + NE G +IQ LRS G+E L C E GI+ +LSA YTP+QN V+ER + M + + N+ +++WAEA + + A L++++ N V+ E EALK KW+ AM EE + KN+TWE D P RK I KW+F+ KL DGSV +YKARLV +G++Q+ G D ET APVAR+ T+ +++ + +++ MDV + +LN ++EE++V
Sbjct: 462 RKFKAKVENESGCKIQILRSDNGKEYTSCQLNLFCEEVGIEHQLSAPYTPEQNGVSERRNRFIMGMAKFMLHEKNLPKKFWAEATNTAVFLQNRLSTKAVKNQTPFEAWKDDPPVRGTRLLSEIYQRCN----VAIYEPADHEEALKE---SKWKDAMKEELFMIEKNKTWELVDR---PQERKVIGVKWVFRTKLNADGSVNKYKARLVVKGYAQIFGVDYSETFAPVARLDTIILLLAISAQLGWKVHQMDVKSAFLNGILQEEIYV 720
BLAST of mRNA_H-paniculata_contig16320.3624.1 vs. uniprot
Match: A0A5N6M9S9_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M9S9_9ASTR) HSP 1 Score: 133 bits (334), Expect = 8.720e-32 Identity = 92/254 (36.22%), Postives = 143/254 (56.30%), Query Frame = 1
Query: 4 KQFEQDIANEIGLQIQRLRSVQGREALRQLCAES-GIKQELSATYTPQQNDVAERSWHSVFEMTRSKMITVNIGRRYWAEAARATIGGNREEDSGAAMLIAKVEDTSNPTGSVS------EEESKSAAEALKSPEADKWRAAMDEEWRTLMKNRTWESEDSGRLPVGRKAICTKWIFKRKLKEDGSVVRYKARLVTQGFSQVEGEDVFETSAPVARMSTLRTFFSLAVEHDFELEGMDVDAVYLNAPVEEELFV 744
K ++Q++ I+ LR+ +G E + +S GI + +A YTPQQN VAER ++ EM S + + +E + + + + G+ + VE T N EE+ K+ +EA+ S +A+ W+ M +E ++M N+TW+ D LP G K + +KWIFK+K+K DGS+ + KARLV QGF Q EG D F+T APVAR+ST+R +LA H+ + MDV +LN +EEE+++
Sbjct: 235 KVYKQEVELHKSGLIKHLRTDRGGEYYNPVYFQSTGIIHQTTAPYTPQQNGVAERKNKTLKEMVNSMLSYSGL-----SEEPKKSTRVRKAKSFGSDFHLYLVEGTRNKVQYQYQYCYNIEEDPKTFSEAMNSRDANFWKEVMQDEIDSIMHNKTWKFTD---LPPGCKPLGSKWIFKKKMKVDGSIDKCKARLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHNLIIHKMDVKTAFLNGELEEEIYM 480
BLAST of mRNA_H-paniculata_contig16320.3624.1 vs. uniprot
Match: A0A438BPX1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BPX1_VITVI) HSP 1 Score: 124 bits (311), Expect = 9.660e-29 Identity = 81/255 (31.76%), Postives = 139/255 (54.51%), Query Frame = 1
Query: 10 FEQDIANEIGLQIQRLRSVQGRE---ALRQLCAESGIKQELSATYTPQQNDVAER-------SWHSVFEMTRSKMITVNIGRRYWAEAARATIGGNREEDSGAAMLIAKVEDTSNPTGSVSEEESKSAAEALKSPEADKWRAAMDEEWRTLMKNRTWESEDSGRLPVGRKAICTKWIFKRKLKEDGSVVRYKARLVTQGFSQVEGEDVFETSAPVARMSTLRTFFSLAVEHDFELEGMDVDAVYLNAPVEEELFV 744
++ ++ N++ +I+ LRS +G E +CA+ GI E +A Y+PQ N VAER + + +E+ + + + R W A+ + +++ G + G E ++ EA+ S E W+ A+ E ++++N TWE D LP G K + +KWIFKRK+K DGS+ +YKARLV +G+ Q EG D F+T +PV R++++R ++A + E+ MDV +LN ++EE+++
Sbjct: 146 YKTEVENQLNKKIKVLRSDRGSEYESPFVDICAQHGIIHETTAPYSPQSNGVAERKNRTKKKAEKTPYELWKGRKPSYTY-LRMWGCLAKVAVPPSKKVKIGPKTIDCIF------IGYAHNSEPQTFKEAVNSTEGLMWKEAIKSEIDSILQNHTWELVD---LPPGCKPLSSKWIFKRKMKVDGSIDKYKARLVIKGYRQTEGLDYFDTYSPVTRINSIRMVLAIAALRNLEIHQMDVKTAFLNGDLDEEIYM 390
BLAST of mRNA_H-paniculata_contig16320.3624.1 vs. uniprot
Match: A0A5N6NTS6_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NTS6_9ASTR) HSP 1 Score: 123 bits (309), Expect = 1.310e-28 Identity = 85/273 (31.14%), Postives = 140/273 (51.28%), Query Frame = 1
Query: 10 FEQDIANEIGLQIQRLRSVQGREALR---QLCAESGIKQELSATYTPQQNDVAERSWHSVFEMTRSKMITVNIGRRYWAEAARATIGGNREEDSGAAMLIAKVEDTSNPTGSVSEEESKSAA-------------------------EALKSPEADKWRAAMDEEWRTLMKNRTWESEDSGRLPVGRKAICTKWIFKRKLKEDGSVVRYKARLVTQGFSQVEGEDVFETSAPVARMSTLRTFFSLAVEHDFELEGMDVDAVYLNAPVEEELFV 744
++ ++ N++ +I+ LRS +G E + +CA+SGI E +A Y+PQQN +AER T +M+ + ++ E +E S ++ + V D E E + + EA+ S E +W+ A+ E ++++N TWE D LP G K + +WIFKRK+K DGS+ +YKARLV +GF Q EG D F+T +PV R++++R ++A + E+ MDV +LN +EEE+++
Sbjct: 75 YKTEVENQLNKKIKVLRSDRGGEYVSPFADICAQSGIIHECTAPYSPQQNGLAERK-----NRTLKEMMNAMLNASFFEEVFPCL---KKEHTSSSSCVDEIVHDEDQEQSEAEEVEPRRSKRQRIEKSFGTDFLTYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVD---LPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYM 336
BLAST of mRNA_H-paniculata_contig16320.3624.1 vs. uniprot
Match: A0A0J7K416_LASNI (Lectin receptor kinase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K416_LASNI) HSP 1 Score: 119 bits (298), Expect = 3.150e-28 Identity = 62/126 (49.21%), Postives = 84/126 (66.67%), Query Frame = 1
Query: 367 EALKSPEADKWRAAMDEEWRTLMKNRTWESEDSGRLPVGRKAICTKWIFKRKLKEDGSVVRYKARLVTQGFSQVEGEDVFETSAPVARMSTLRTFFSLAVEHDFELEGMDVDAVYLNAPVEEELFV 744
EA+K PE +KW+ A++EE + KN TW + LP GR+ I KWIFK+KL E+G+VVRYKARLV +G+SQ EG D ET APV R T+RT + A + +E+ DV +LN +EEE+F+
Sbjct: 179 EAIKGPEGEKWKEAINEELDAMEKNSTWTVVKN--LPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQREGIDYEETFAPVVRYETVRTLLAEAAMNKYEIGQFDVKTAFLNGDLEEEIFM 302
BLAST of mRNA_H-paniculata_contig16320.3624.1 vs. uniprot
Match: A0A6L2KY72_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2KY72_TANCI) HSP 1 Score: 122 bits (305), Expect = 6.580e-28 Identity = 83/231 (35.93%), Postives = 124/231 (53.68%), Query Frame = 1
Query: 103 SGIKQELSATYTPQQNDVAERSWHSVFEMTRSKMITVNIGRRYWAEAA-----------RATIGGNREEDSGAAMLIAKVEDTSNPTGS------VSEEESKSAAEALKSPEADKWRAAMDEEWRTLMKNRTWESEDSGRLPVGRKAICTKWIFKRKLKEDGSVVRYKARLVTQGFSQVEGEDVFETSAPVARMSTLRTFFSLAVEHDFELEGMDVDAVYLNAPVEEELFV 744
+GI + A YTPQQN VAER ++ EM S + + + E R + + + G+ + VE T + T S + EE+ K+ +EA+ S W+ A+ + ++M N TWE D LP+G KA+ KWI KRK+K DG++ +YKARLV Q F Q E D F+T APVAR+ST+R +LA HD + MDV +LN ++E++++
Sbjct: 352 TGIIHQTMAPYTPQQNGVAERKNKTLKEMVNSMLSYSGLSKIAEDEVEGTDGVPGPSVLRKSTRTRKTKSFGSDFQLYLVEGTRDKTLSQREYCFIIEEDPKTLSEAMASRYVAFWKEAVQSKIDSIMHNDTWELTD---LPLGCKALGCKWILKRKMKVDGNIDKYKARLVIQSFRQKERIDFFDTYAPVARISTIRLLLALAAIHDLVIHQMDVKIAFLNGDLDEKIYM 579
BLAST of mRNA_H-paniculata_contig16320.3624.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL) HSP 1 Score: 120 bits (301), Expect = 9.450e-28 Identity = 63/124 (50.81%), Postives = 81/124 (65.32%), Query Frame = 1
Query: 373 LKSPEADKWRAAMDEEWRTLMKNRTWESEDSGRLPVGRKAICTKWIFKRKLKEDGSVVRYKARLVTQGFSQVEGEDVFETSAPVARMSTLRTFFSLAVEHDFELEGMDVDAVYLNAPVEEELFV 744
+K PEA+ W+AAMD+E +L +N TW+ D LP GRKA+ KWIFKRKL EDG+VVRYKARLV QGF+Q G D E APV R T R ++A + ++ DV YLN +EE +F+
Sbjct: 1 MKGPEAELWKAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFM 121
BLAST of mRNA_H-paniculata_contig16320.3624.1 vs. uniprot
Match: A0A438FBG2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FBG2_VITVI) HSP 1 Score: 120 bits (302), Expect = 1.730e-27 Identity = 89/277 (32.13%), Postives = 138/277 (49.82%), Query Frame = 1
Query: 4 KQFEQDIANEIGLQIQRLRSVQGREAL----RQLCAESGIKQELSATYTPQQNDVAERSWHSVFEMTRSKMITVNIGRRYWA---EAARATIGGNREEDSGAAMLIAKVEDTSNPTGSVSEE-----------------------ESKSAAEALKSPEADKWRAAMDEEWRTLMKNRTWESEDSGRLPVGRKAICTKWIFKRKLKEDGSVVRYKARLVTQGFSQVEGEDVFETSAPVARMSTLRTFFSLAVEHDFELEGMDVDAVYLNAPVEEELFV 744
K+++ + E GL+++ LRS G E + + CA GI+ E++ TPQQN VAER ++ E RS + ++ + + E +T+ EED + D S P V E + EAL+ + KW AM +E +L+ N+TWE + LPVG+KA+ KW+++ K + DGS RYKARLV +GF Q EG D E +PV +MST+R + + LE +DV +L+ +EE+L++
Sbjct: 402 KKWKAMVETETGLKVKCLRSDNGGEYIDRGFNEYCAAQGIRMEMTILRTPQQNGVAERMNRTLNERARSDVTEIDQKKSEFVNLDELTESTVQKGGEEDK---ENVNSQVDLSTPVAEVRRSSRNIRPPQRYSPVLNYLLLTDGGEPECYDEALQDENSSKWELAMKDEMDSLLGNQTWELTE---LPVGKKALHNKWVYRIKNEHDGSK-RYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEEDLYM 671
BLAST of mRNA_H-paniculata_contig16320.3624.1 vs. uniprot
Match: A0A0D2M7V7_9CHLO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2M7V7_9CHLO) HSP 1 Score: 113 bits (283), Expect = 1.800e-27 Identity = 66/170 (38.82%), Postives = 97/170 (57.06%), Query Frame = 1
Query: 235 AEAARATIGGNREEDSGAAMLIAKVEDTSNPTGSVSEEESKSAAEALKSPEADKWRAAMDEEWRTLMKNRTWESEDSGRLPVGRKAICTKWIFKRKLKEDGSVVRYKARLVTQGFSQVEGEDVFETSAPVARMSTLRTFFSLAVEHDFELEGMDVDAVYLNAPVEEELFV 744
AEA + G+R++DS I T T EE AL+S E+ +W A+D+E+R+L+KN TWE E+ LP G K I KW+ K K DG++ R+KARLV +GF Q EG D ET AP +R +TLR + A E D EL +D+ +L +++++++
Sbjct: 3 AEATALFVAGDRDDDSTLGAFITAAALTGTATDPTVEE-------ALQSAESQQWLTAIDDEYRSLLKNCTWEVEE---LPPGVKPIPVKWVLKAKRDADGNIERFKARLVAKGFHQREGIDYEETFAPTSRYTTLRVLLATAAELDLELGQLDIKTAFLYGKIDKDIWI 162 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16320.3624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16320.3624.1 >prot_H-paniculata_contig16320.3624.1 ID=prot_H-paniculata_contig16320.3624.1|Name=mRNA_H-paniculata_contig16320.3624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp LKQFEQDIANEIGLQIQRLRSVQGREALRQLCAESGIKQELSATYTPQQNback to top mRNA from alignment at H-paniculata_contig16320:3523..4913+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16320.3624.1 ID=mRNA_H-paniculata_contig16320.3624.1|Name=mRNA_H-paniculata_contig16320.3624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1391bp|location=Sequence derived from alignment at H-paniculata_contig16320:3523..4913+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16320:3523..4913+ >mRNA_H-paniculata_contig16320.3624.1 ID=mRNA_H-paniculata_contig16320.3624.1|Name=mRNA_H-paniculata_contig16320.3624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at H-paniculata_contig16320:3523..4913+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |