mRNA_H-paniculata_contig16309.3616.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16309.3616.1
Unique NamemRNA_H-paniculata_contig16309.3616.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16309.3616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16309contigH-paniculata_contig16309:3442..5687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size232
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16309.3616.1prot_H-paniculata_contig16309.3616.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16309 3442..5680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929300.8603241-CDS-H-paniculata_contig16309:3441..35611622929300.8603241-CDS-H-paniculata_contig16309:3441..3561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16309 3442..3561 -
1691480806.8020415-CDS-H-paniculata_contig16309:3441..35611691480806.8020415-CDS-H-paniculata_contig16309:3441..3561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16309 3442..3561 -
1622929300.8755155-CDS-H-paniculata_contig16309:5575..56801622929300.8755155-CDS-H-paniculata_contig16309:5575..5680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16309 5576..5680 -
1691480806.8100822-CDS-H-paniculata_contig16309:5575..56801691480806.8100822-CDS-H-paniculata_contig16309:5575..5680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16309 5576..5680 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929300.8880045-UTR-H-paniculata_contig16309:5680..56871622929300.8880045-UTR-H-paniculata_contig16309:5680..5687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16309 5681..5687 -
1691480806.8180664-UTR-H-paniculata_contig16309:5680..56871691480806.8180664-UTR-H-paniculata_contig16309:5680..5687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16309 5681..5687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16309.3616.1

>prot_H-paniculata_contig16309.3616.1 ID=prot_H-paniculata_contig16309.3616.1|Name=mRNA_H-paniculata_contig16309.3616.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
MTFCPAIKSSLRSSDRQWKCHSAGLRNAARMANDKSGGRGIIFLLVRGGL
VSRSSWTECGCCSMKSIWLLRKRYT
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mRNA from alignment at H-paniculata_contig16309:3442..5687-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16309.3616.1 ID=mRNA_H-paniculata_contig16309.3616.1|Name=mRNA_H-paniculata_contig16309.3616.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2246bp|location=Sequence derived from alignment at H-paniculata_contig16309:3442..5687- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGAACATGACATTTTGCCCGGCGATCAAGTCAAGTCTTCGTTCGAGCG
ACCGACAGTGGAAGTGCCATTCGGCAGGACTGCGTAACGCCGCTAGAATG
GCTAACGATAAGGTCAGTCATCACAGTCCACGCGGTTGTAGAACGTTATG
TAAAAAGGTCTGATTTTGTTCGTGCAGTTAGACTCCAACCCGAGGAATGG
TGTCGTAACGTCCCGCCGGTTTAATAGTCGGGTGGTGTTGAAATGCATCT
GAAGGCACCCGTGAAGCTAACGCATCGCCGTCGATGAAACAGATGCTCAT
CAGTGTACAAAGTTGGGAGTTGACACGAATGTTCGCGTGCCGTAAGCGCA
GGTAAACTACTAGGTATTGTACACTAACGTGTAACAGAAGAAATACGAGG
GAGGGTGACAGTTTTCACCGGAAGTTAATTTTGTACTTTTCCGAAAGTCC
ATCTTGTGTGGCCTTGCTTACCATCATCATGACGTATATATTCGCCTTGC
CCATCTTGGGACCCGACTTGAACGTGACTTCGAAAAGTGGTATACGATGG
TGACTTGGATGAGGAGAGATCCCAATCAGCCCTCTGTTCTTGAGGGGGAA
ATGTATGCATCCGTTGGACGTGTGTAACTTGGGTGGCGGCCATACGCATG
CATAGGCAAACCGTTTGGCGAAAAGGAAAGAAGCGTCAAATTCGAGACGC
GGGTTCGCGGAGAAGAGAGCGCAGCCTCGACGAACACACGGTATGAGGTG
TCAAATGTCCAACAAATGTAGTGTTGTGCACGCTGGCGATGATTGTAGCA
ACTTGGCGCCCCCGTGGTTTGAGTCTCTGCAGCCCTCATCCTCCACATTA
GAGGGAAAGGTTGTGTGTAGATTCGCTGCAGAAAGGAGAGGCGCTCTTCG
ACTGGACGGTGAAGACGAACAAGCGACCATACTCTATGAGCTCGTGCACA
GCTTTGGTGTGGAGAAAATACAATTCAAACACCGTCTCGCACGATAATCT
GCGTAGACTCCCCCCCCCCCTCCCCTCCAATTATCTCCCCGCTTTCTGTA
AAATAGGCTGTAAACTGAAGAATTTCGAATATTTGTGGATGAAGTGCTGA
AAAGAGCTTCATGCTTTTCTAAGCCTCCATACAGCCATGTATTGATGAAT
CAACATGCACCACTATCTGATCGACATTGAGGCAGGTGGCGCGATATAGT
TGGTTTTGGGTTGGTGCTGAACTTGTCGACGTTTTTATGCAGTAACGGCA
AGCTCGGTCGTGACGCGTATTACATTTGATGTGTCGGCCTAGACTGTTGG
CATGTTGGGTTGGTGTCTCATGTCCACCGCTTGCATTCTAGTGGCCTGCT
TTTGAAAGAAGTTGTACAAAAGCACTGAGAATCGATGAGTGTTCGAATTT
CCCCTCGAGAGCGTGATCAACAAGAATTGACGGTCGGGCGGCACAGACTG
AATGTGGAGTCCGTCTACTCGTTGGATAGAGTGGGAACGGTTCGGCAGGA
ACGCTGAACGATTCGAGAAACGGGTGATGTGCATGAAACGATCGTAATAC
ACTACCGACAACTCTTTGCACAGACTTGAAATCGTCTCCACTAGGTTTGT
GCCGTAGTATGTATTCGAAAGAGTCACCTGATCTTCGTCACTACAGTTGC
ATTGTAATTTTTCAATCATACTTGAAAAGACGTCCACATACTTCCAATGC
CGTATGTAAGTTGAATCGTTACAAATCGTGCACGAAGATACCCTACGTTT
CGGGTAGAGGCACATGAAGCTTCTCCATGATTACACATGGTAGTTGGGCT
AATGAAATAATTTTAAAGTTTGAGAACTGAATCTCCTCATCTAATGGAAA
GTGGAGGACAACATGTCTTATTCTGAAGCCTGGAACCCATACACCATTTT
TCAGTTTGTTGAAATGAGGCGTACGGCCTTTCCATGAATAAATCCGAATT
TTCACGATACCGACGCAATGTAAGTTGCTCATGAAAGAATGGTGTAATAG
TAGATGGATGAGTTGGTCTGGAAATCCTCCAAACGGATCGAACCTCGTCG
TGGAATCATAGATAGTCGTCGCGGTGAACCCGCCACATACCGTGACACGA
AATGTTTCATCTTGTCGCCTCGTCAGAGTGGCGGTAGAGGGATCATTTTC
CTTCTCGTTCGTGGAGGGCTGGTGTCAAGGTCATCCTGGACGGAGTGTGG
GTGCTGTTCGATGAAATCAATCTGGCTTCTGCGGAAACGTTACACG
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Coding sequence (CDS) from alignment at H-paniculata_contig16309:3442..5687-

>mRNA_H-paniculata_contig16309.3616.1 ID=mRNA_H-paniculata_contig16309.3616.1|Name=mRNA_H-paniculata_contig16309.3616.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig16309:3442..5687- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACATTTTGCCCGGCGATCAAGTCAAGTCTTCGTTCGAGCGACCGACA
GTGGAAGTGCCATTCGGCAGGACTGCGTAACGCCGCTAGAATGGCTAACG
ATAAGATGACATTTTGCCCGGCGATCAAGTCAAGTCTTCGTTCGAGCGAC
CGACAGTGGAAGTGCCATTCGGCAGGACTGCGTAACGCCGCTAGAATGGC
TAACGATAAGAGTGGCGGTAGAGGGATCATTTTCCTTCTCGTTCGTGGAG
GGCTGGTGTCAAGGTCATCCTGGACGGAGTGTGGGTGCTGTTCGATGAAA
TCAATCTGGCTTCTGCGGAAACGTTACACGAGTGGCGGTAGAGGGATCAT
TTTCCTTCTCGTTCGTGGAGGGCTGGTGTCAAGGTCATCCTGGACGGAGT
GTGGGTGCTGTTCGATGAAATCAATCTGGCTTCTGCGGAAACGTTACACG
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